3SPBA

Unliganded e. cloacae mura
Total Genus 135
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
135
sequence length
419
structure length
418
Chain Sequence
MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGCAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA).
pubmed doi rcsb
molecule tags Transferase
source organism Enterobacter cloacae
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 135
structure length 418
sequence length 419
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2011-07-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3spbA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3spbA01
3FK0A 3ZH4A 3ROIA 4E7BA 3FJZA 3R38A 1G6TA 3UPKA 1A2NA 4R7UA 3SPBA 2RL2A 4E7CA 2PQBA 2AA9A 5BQ2A 3SLHA 2GGDA 4EGRA 1RF4A 2BJBA 3SWGA 1RF6A 4E7FA 1EJDA 1P88A 4E7EA 3NVSA 3V4TA 2QFTA 5BS5A 1X8TA 2PQDA 1NAWA 2GG4A 3SWEA 1P89A 2O0EA 3RMTA 3TI2A 3FJXA 3SWDA 2Z2CA 2O15A 1EJCA 2QFUA 1Q3GA 1DLGA 3FK1A 3V5VA 2PQCA 2O0XA 2O0BA 4GFPA 1Q36A 1X8RA 3KQJA 2QFSA 5BUFA 1EYNA 3SWIA 1G6SA 3KQAA 3LTHA 1YBGA 5U4HA 2AAYA 4EIIA 1MI4A 3ISSA 2RL1A 2YVWA 1UAEA 2PQ9A 2O0ZA 3KR6A 3ZH3A 2GG6A 4ZNDA 3SU9A 4FQDA 4N3PA 3VCYA 1RF5A 3SWQA 3SG1A 3SWAA 3TR1A 2O0DA 2GGAA 2QFQA 4E7DA 1RYWA 4E7GA
chains in the Genus database with same CATH superfamily
3FK0A 3ZH4A 3PQVA 3ROIA 4E7BA 3FJZA 3R38A 4CLQA 1G6TA 3UPKA 1A2NA 4R7UA 3SPBA 2RL2A 3KGDA 4E7CA 2PQBA 2AA9A 5BQ2A 3SLHA 2GGDA 4EGRA 1RF4A 2BJBA 3SWGA 1RF6A 4E7FA 1EJDA 1P88A 4E7EA 3NVSA 3V4TA 2QFTA 5BS5A 1X8TA 2PQDA 1NAWA 2GG4A 3SWEA 1P89A 2O0EA 3RMTA 3TI2A 3FJXA 3SWDA 2Z2CA 2O15A 1EJCA 2QFUA 1Q3GA 1DLGA 3TW3A 3FK1A 3V5VA 3TUXA 2PQCA 2O0XA 2O0BA 4GFPA 4O8JA 1Q36A 1QMIA 1X8RA 3KQJA 2QFSA 5BUFA 1EYNA 3SWIA 1G6SA 3KQAA 3LTHA 1YBGA 1QMHA 4O89A 5U4HA 2AAYA 4EIIA 1MI4A 3ISSA 3TUTA 2RL1A 2YVWA 1UAEA 2PQ9A 2O0ZA 3KR6A 3ZH3A 2GG6A 4ZNDA 3TV1A 3SU9A 4FQDA 4N3PA 3VCYA 1RF5A 3SWQA 3SG1A 3SWAA 3TR1A 2O0DA 2GGAA 2QFQA 4E7DA 1RYWA 4E7GA
chains in the Genus database with same CATH topology
3FK0A 3ZH4A 3ROIA 4E7BA 3FJZA 3R38A 1G6TA 3UPKA 1A2NA 4R7UA 3SPBA 2RL2A 4E7CA 2PQBA 2AA9A 5BQ2A 3SLHA 2GGDA 4EGRA 1RF4A 2BJBA 3SWGA 1RF6A 4E7FA 1EJDA 1P88A 4E7EA 3NVSA 3V4TA 2QFTA 5BS5A 1X8TA 2PQDA 1NAWA 2GG4A 3SWEA 1P89A 2O0EA 3RMTA 3TI2A 3FJXA 3SWDA 2Z2CA 2O15A 1EJCA 2QFUA 1Q3GA 1DLGA 3FK1A 3V5VA 2PQCA 2O0XA 2O0BA 4GFPA 1Q36A 1X8RA 3KQJA 2QFSA 5BUFA 1EYNA 3SWIA 1G6SA 3KQAA 3LTHA 1YBGA 5U4HA 2AAYA 4EIIA 1MI4A 3ISSA 2RL1A 2YVWA 1UAEA 2PQ9A 2O0ZA 3KR6A 3ZH3A 2GG6A 4ZNDA 3SU9A 4FQDA 4N3PA 3VCYA 1RF5A 3SWQA 3SG1A 3SWAA 3TR1A 2O0DA 2GGAA 2QFQA 4E7DA 1RYWA 4E7GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FK0 A;  3ZH4 A;  3ROI A;  4E7B A;  3FJZ A;  3R38 A;  1G6T A;  3UPK A;  1A2N A;  4R7U A;  3SPB A;  2RL2 A;  4E7C A;  2PQB A;  2AA9 A;  5BQ2 A;  3SLH A;  2GGD A;  4EGR A;  1RF4 A;  2BJB A;  3SWG A;  1RF6 A;  4E7F A;  1EJD A;  1P88 A;  4E7E A;  3NVS A;  3V4T A;  2QFT A;  5BS5 A;  1X8T A;  2PQD A;  1NAW A;  2GG4 A;  3SWE A;  1P89 A;  2O0E A;  3RMT A;  3TI2 A;  3FJX A;  3SWD A;  2Z2C A;  2O15 A;  1EJC A;  2QFU A;  1Q3G A;  1DLG A;  3FK1 A;  3V5V A;  2PQC A;  2O0X A;  2O0B A;  4GFP A;  1Q36 A;  1X8R A;  3KQJ A;  2QFS A;  5BUF A;  1EYN A;  3SWI A;  1G6S A;  3KQA A;  3LTH A;  1YBG A;  5U4H A;  2AAY A;  4EII A;  1MI4 A;  3ISS A;  2RL1 A;  2YVW A;  1UAE A;  2PQ9 A;  2O0Z A;  3KR6 A;  3ZH3 A;  2GG6 A;  4ZND A;  3SU9 A;  4FQD A;  4N3P A;  3VCY A;  1RF5 A;  3SWQ A;  3SG1 A;  3SWA A;  3TR1 A;  2O0D A;  2GGA A;  2QFQ A;  4E7D A;  1RYW A;  4E7G A; 
#chains in the Genus database with same CATH topology
 3FK0 A;  3ZH4 A;  3PQV A;  3ROI A;  4E7B A;  3FJZ A;  3R38 A;  4CLQ A;  1G6T A;  3UPK A;  1A2N A;  4R7U A;  3SPB A;  2RL2 A;  3KGD A;  4E7C A;  2PQB A;  2AA9 A;  5BQ2 A;  3SLH A;  2GGD A;  4EGR A;  1RF4 A;  2BJB A;  3SWG A;  1RF6 A;  4E7F A;  1EJD A;  1P88 A;  4E7E A;  3NVS A;  3V4T A;  2QFT A;  5BS5 A;  1X8T A;  2PQD A;  1NAW A;  2GG4 A;  3SWE A;  1P89 A;  2O0E A;  3RMT A;  3TI2 A;  3FJX A;  3SWD A;  2Z2C A;  2O15 A;  1EJC A;  2QFU A;  1Q3G A;  1DLG A;  3TW3 A;  3FK1 A;  3V5V A;  3TUX A;  2PQC A;  2O0X A;  2O0B A;  4GFP A;  4O8J A;  1Q36 A;  1QMI A;  1X8R A;  3KQJ A;  2QFS A;  5BUF A;  1EYN A;  3SWI A;  1G6S A;  3KQA A;  3LTH A;  1YBG A;  1QMH A;  4O89 A;  5U4H A;  2AAY A;  4EII A;  1MI4 A;  3ISS A;  3TUT A;  2RL1 A;  2YVW A;  1UAE A;  2PQ9 A;  2O0Z A;  3KR6 A;  3ZH3 A;  2GG6 A;  4ZND A;  3TV1 A;  3SU9 A;  4FQD A;  4N3P A;  3VCY A;  1RF5 A;  3SWQ A;  3SG1 A;  3SWA A;  3TR1 A;  2O0D A;  2GGA A;  2QFQ A;  4E7D A;  1RYW A;  4E7G A; 
#chains in the Genus database with same CATH homology
 3FK0 A;  3ZH4 A;  3ROI A;  4E7B A;  3FJZ A;  3R38 A;  1G6T A;  3UPK A;  1A2N A;  4R7U A;  3SPB A;  2RL2 A;  4E7C A;  2PQB A;  2AA9 A;  5BQ2 A;  3SLH A;  2GGD A;  4EGR A;  1RF4 A;  2BJB A;  3SWG A;  1RF6 A;  4E7F A;  1EJD A;  1P88 A;  4E7E A;  3NVS A;  3V4T A;  2QFT A;  5BS5 A;  1X8T A;  2PQD A;  1NAW A;  2GG4 A;  3SWE A;  1P89 A;  2O0E A;  3RMT A;  3TI2 A;  3FJX A;  3SWD A;  2Z2C A;  2O15 A;  1EJC A;  2QFU A;  1Q3G A;  1DLG A;  3FK1 A;  3V5V A;  2PQC A;  2O0X A;  2O0B A;  4GFP A;  1Q36 A;  1X8R A;  3KQJ A;  2QFS A;  5BUF A;  1EYN A;  3SWI A;  1G6S A;  3KQA A;  3LTH A;  1YBG A;  5U4H A;  2AAY A;  4EII A;  1MI4 A;  3ISS A;  2RL1 A;  2YVW A;  1UAE A;  2PQ9 A;  2O0Z A;  3KR6 A;  3ZH3 A;  2GG6 A;  4ZND A;  3SU9 A;  4FQD A;  4N3P A;  3VCY A;  1RF5 A;  3SWQ A;  3SG1 A;  3SWA A;  3TR1 A;  2O0D A;  2GGA A;  2QFQ A;  4E7D A;  1RYW A;  4E7G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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