3SR2A

Crystal structure of human xlf-xrcc4 complex
Total Genus 30
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
30
sequence length
139
structure length
139
Chain Sequence
MERKISRIHLVSEPSITHFLQVSWEKTLESGFVITLTDGHSAWTGTVSESEISQEADDMAMEKGKYVGELRKALLSGAGPADVYTFNFSKESCYFFFEKNLKDVSFRLGSFNLEKVENPAEVIRELICYCLDTIAENQA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title XRCC4 Protein Interactions with XRCC4-like Factor (XLF) Create an Extended Grooved Scaffold for DNA Ligation and Double Strand Break Repair.
pubmed doi rcsb
molecule tags Dna binding protein/protein binding
source organism Homo sapiens
molecule keywords DNA repair protein XRCC4
total genus 30
structure length 139
sequence length 139
chains with identical sequence B, E, F
ec nomenclature
pdb deposition date 2011-07-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.210.10 Mainly Beta Beta Complex Dna Repair Protein Xrcc4; Chain: A, domain 1 DNA double-strand break repair and VJ recombination XRCC4, N-terminal 3sr2A00
3MUDA 3II6A 2R9AA 3RWRA 5CHXA 1IK9A 3RWRD 1FU1A 3SR2A 3SR2C 4XA4A 5CJ0A 5CJ4A 2QM4A
chains in the Genus database with same CATH superfamily
3MUDA 3II6A 3Q0XA 3PYIA 4GEUA 2R9AA 3RWRA 2Y3WA 3Q0YA 5CHXA 3SR2A 1FU1A 4CKNA 4CKMA 4GEXA 3RWRD 4GFCA 1IK9A 3SR2C 4XA4A 5CJ4A 2Y3VA 4GFAA 5CJ0A 4CKPA 2QM4A 4G79A
chains in the Genus database with same CATH topology
3MUDA 3II6A 2R9AA 3RWRA 5CHXA 1IK9A 3RWRD 1FU1A 3SR2A 3SR2C 4XA4A 5CJ0A 5CJ4A 2QM4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3MUD A;  3II6 A;  2R9A A;  3RWR A;  5CHX A;  1IK9 A;  3RWR D;  1FU1 A;  3SR2 A;  3SR2 C;  4XA4 A;  5CJ0 A;  5CJ4 A;  2QM4 A; 
#chains in the Genus database with same CATH topology
 3MUD A;  3II6 A;  3Q0X A;  3PYI A;  4GEU A;  2R9A A;  3RWR A;  2Y3W A;  3Q0Y A;  5CHX A;  3SR2 A;  1FU1 A;  4CKN A;  4CKM A;  4GEX A;  3RWR D;  4GFC A;  1IK9 A;  3SR2 C;  4XA4 A;  5CJ4 A;  2Y3V A;  4GFA A;  5CJ0 A;  4CKP A;  2QM4 A;  4G79 A; 
#chains in the Genus database with same CATH homology
 3MUD A;  3II6 A;  2R9A A;  3RWR A;  5CHX A;  1IK9 A;  3RWR D;  1FU1 A;  3SR2 A;  3SR2 C;  4XA4 A;  5CJ0 A;  5CJ4 A;  2QM4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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