3SRCA

Structure of pseudomonas aeruginosa pvdq bound to ns2028
Total Genus 55
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
55
sequence length
164
structure length
164
Chain Sequence
TGLAADIRWTAYGVPHIRAKDERGLGYGIGYAYARDNACLLAEEIVTARGERARYFGSEGKSSAELDNLPSDIFYAWLNQPEALQAFWQAQTPAVRQLLEGYAAGFNRFLREADGKTTSCLGQPWLRAIATDDLLRLTRRLLVEGGVGQFADALVAAAPPGAEK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural Characterization and High-Throughput Screening of Inhibitors of PvdQ, an NTN Hydrolase Involved in Pyoverdine Synthesis.
pubmed doi rcsb
molecule tags Hydrolase/hydrolase inhibitor
source organism Pseudomonas aeruginosa
molecule keywords Acyl-homoserine lactone acylase pvdQ
total genus 55
structure length 164
sequence length 164
ec nomenclature ec 3.5.1.97: Acyl-homoserine-lactone acylase.
pdb deposition date 2011-07-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.439.10 Mainly Alpha Orthogonal Bundle Penicillin Amidohydrolase; domain 1 Penicillin Amidohydrolase, domain 1 3srcA00
4K2GA 3L94A 1AI4A 2WYBA 4E55A 1JX9A 1JW0A 4M1JA 4YF9A 1E3AA 1FXVA 2ADVA 1K7DA 3K3WA 4K2FA 1GM9A 1GKFA 2WYDA 1PNKA 2AE4A 1AI7A 1GK0A 1KEHA 3JTRA 3JTQA 1AJNA 3SRAA 1AJPA 1FXHA 4BTHA 2AE5A 2WYEA 4YFAA 4PELA 4WKUA 4PEMA 3SRCA 1GM8A 1H2GA 1GK9A 1GHDA 1JVZA 1PNLA 3ML0A 3SRBA 4E57A 1PNMA 1K5QA 4YFBA 1AJQA 4WKTA 1AI5A 2AE3A 2WYCA 1K5SA 1GM7A 4WKVA 1GK1A 4E56A 1FM2A 1CP9A 4HSRA 1OR0A 3L91A 4HSTA 3S8RA 1KECA 1AI6A 4WKSA
chains in the Genus database with same CATH superfamily
4K2GA 3L94A 1AI4A 2WYBA 4E55A 1JX9A 1JW0A 4M1JA 4YF9A 1E3AA 1FXVA 2ADVA 1K7DA 3K3WA 4BWCA 4K2FA 1GM9A 1GKFA 2WYDA 1PNKA 2AE4A 1AI7A 1GK0A 1KEHA 3JTRA 3JTQA 1AJNA 3SRAA 1AJPA 1FXHA 4BTHA 2AE5A 2WYEA 4YFAA 4PELA 4WKUA 4PEMA 3SRCA 1GM8A 1H2GA 1GK9A 1GHDA 1JVZA 1PNLA 3FGTA 3ML0A 3SRBA 1PNMA 1K5QA 4E57A 4YFBA 1AJQA 4WKTA 1AI5A 2AE3A 2WYCA 1K5SA 1GM7A 4WKVA 1GK1A 4E56A 1FM2A 1CP9A 4HSRA 1OR0A 3FGRA 3L91A 4HSTA 3S8RA 1KECA 1AI6A 4WKSA
chains in the Genus database with same CATH topology
4K2GA 3L94A 1AI4A 2WYBA 4E55A 1JX9A 1JW0A 4M1JA 4YF9A 1E3AA 1FXVA 2ADVA 1K7DA 3K3WA 4K2FA 1GM9A 1GKFA 2WYDA 1PNKA 2AE4A 1AI7A 1GK0A 1KEHA 3JTRA 3JTQA 1AJNA 3SRAA 1AJPA 1FXHA 4BTHA 2AE5A 2WYEA 4YFAA 4PELA 4WKUA 4PEMA 3SRCA 1GM8A 1H2GA 1GK9A 1GHDA 1JVZA 1PNLA 3ML0A 3SRBA 4E57A 1PNMA 1K5QA 4YFBA 1AJQA 4WKTA 1AI5A 2AE3A 2WYCA 1K5SA 1GM7A 4WKVA 1GK1A 4E56A 1FM2A 1CP9A 4HSRA 1OR0A 3L91A 4HSTA 3S8RA 1KECA 1AI6A 4WKSA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4K2G A;  3L94 A;  1AI4 A;  2WYB A;  4E55 A;  1JX9 A;  1JW0 A;  4M1J A;  4YF9 A;  1E3A A;  1FXV A;  2ADV A;  1K7D A;  3K3W A;  4K2F A;  1GM9 A;  1GKF A;  2WYD A;  1PNK A;  2AE4 A;  1AI7 A;  1GK0 A;  1KEH A;  3JTR A;  3JTQ A;  1AJN A;  3SRA A;  1AJP A;  1FXH A;  4BTH A;  2AE5 A;  2WYE A;  4YFA A;  4PEL A;  4WKU A;  4PEM A;  3SRC A;  1GM8 A;  1H2G A;  1GK9 A;  1GHD A;  1JVZ A;  1PNL A;  3ML0 A;  3SRB A;  4E57 A;  1PNM A;  1K5Q A;  4YFB A;  1AJQ A;  4WKT A;  1AI5 A;  2AE3 A;  2WYC A;  1K5S A;  1GM7 A;  4WKV A;  1GK1 A;  4E56 A;  1FM2 A;  1CP9 A;  4HSR A;  1OR0 A;  3L91 A;  4HST A;  3S8R A;  1KEC A;  1AI6 A;  4WKS A; 
#chains in the Genus database with same CATH topology
 4K2G A;  3L94 A;  1AI4 A;  2WYB A;  4E55 A;  1JX9 A;  1JW0 A;  4M1J A;  4YF9 A;  1E3A A;  1FXV A;  2ADV A;  1K7D A;  3K3W A;  4BWC A;  4K2F A;  1GM9 A;  1GKF A;  2WYD A;  1PNK A;  2AE4 A;  1AI7 A;  1GK0 A;  1KEH A;  3JTR A;  3JTQ A;  1AJN A;  3SRA A;  1AJP A;  1FXH A;  4BTH A;  2AE5 A;  2WYE A;  4YFA A;  4PEL A;  4WKU A;  4PEM A;  3SRC A;  1GM8 A;  1H2G A;  1GK9 A;  1GHD A;  1JVZ A;  1PNL A;  3FGT A;  3ML0 A;  3SRB A;  1PNM A;  1K5Q A;  4E57 A;  4YFB A;  1AJQ A;  4WKT A;  1AI5 A;  2AE3 A;  2WYC A;  1K5S A;  1GM7 A;  4WKV A;  1GK1 A;  4E56 A;  1FM2 A;  1CP9 A;  4HSR A;  1OR0 A;  3FGR A;  3L91 A;  4HST A;  3S8R A;  1KEC A;  1AI6 A;  4WKS A; 
#chains in the Genus database with same CATH homology
 4K2G A;  3L94 A;  1AI4 A;  2WYB A;  4E55 A;  1JX9 A;  1JW0 A;  4M1J A;  4YF9 A;  1E3A A;  1FXV A;  2ADV A;  1K7D A;  3K3W A;  4K2F A;  1GM9 A;  1GKF A;  2WYD A;  1PNK A;  2AE4 A;  1AI7 A;  1GK0 A;  1KEH A;  3JTR A;  3JTQ A;  1AJN A;  3SRA A;  1AJP A;  1FXH A;  4BTH A;  2AE5 A;  2WYE A;  4YFA A;  4PEL A;  4WKU A;  4PEM A;  3SRC A;  1GM8 A;  1H2G A;  1GK9 A;  1GHD A;  1JVZ A;  1PNL A;  3ML0 A;  3SRB A;  4E57 A;  1PNM A;  1K5Q A;  4YFB A;  1AJQ A;  4WKT A;  1AI5 A;  2AE3 A;  2WYC A;  1K5S A;  1GM7 A;  4WKV A;  1GK1 A;  4E56 A;  1FM2 A;  1CP9 A;  4HSR A;  1OR0 A;  3L91 A;  4HST A;  3S8R A;  1KEC A;  1AI6 A;  4WKS A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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