3SRJA

Pfama1 in complex with invasion-inhibitory peptide r1
Total Genus 84
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
84
sequence length
340
structure length
298
Chain Sequence
MGNPWTEYMAKYDIEEVHGSGIRVDLGEDAEVAGTQYRLPSGKCPVFGKGIIIENSKTTFLTPVATGNQYLKDGGFAFPPTEPLMSPMTLDEMRHFYKDNKYVKNLDELTLCSRHAGNMIPDNDKNSNYKYPAVYDDKDKKCHILYIAAQENNGPRYCNSMFCFRPAKDISFQNYVYLSKNVVDNWEKVCPRKNLQNAKFGLWVDGNCEDIPHVNEFPAIDLFECNKLVFELSASDQPKQDRYKSHGKGYNWGNYNTETQKCEIFNVKPTCLINDKSYIATTALSHPIEVENNFPSVP
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell invasion/inhibitor
molecule keywords Apical membrane antigen 1, AMA1
publication title Structural and functional insights into the malaria parasite moving junction complex.
pubmed doi rcsb
source organism Plasmodium falciparum
total genus 84
structure length 298
sequence length 340
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-07-07
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.50.4.10 Alpha Beta 3-Layer(bba) Sandwich Hepatocyte Growth Factor Hepatocyte Growth Factor 3srjA01
3HMTA 2J8JA 2YILA 4UAOA 1GP9A 4DURA 4R19A 1W8KA 3HMRA 1NK1A 5CT3A 1GMOA 2Q8AA 5CSQA 3SRJA 5I25A 5CS9A 5EOKA 4Z0EA 5COEA 4Z0FA 2Z8WA 2J8LA 4R1CA 3ZLEA 2QJ2A 3HMSA 5CS5A 1HKYA 3MKPA 2Y8RA 2Z8VA 1YXEA 2K13X 1W81A 4R1BA 5CS1A 5CT1A 3SRIA 2LL3A 2HGFA 1GMNA 5CS3A 2YIOA 3ZWZA 1BHTA 2YIPA 2F83A 1Z40A 3SP8A 1I8NA 2QJ4A 4UV6A 2Q8BA 5CP9A 4R1AA 4IUAA 4APLA 4Z09A 5EODA 2X2ZA 3HN4A 4APMA 4A5TS 4Z0DA 2LL4M 5CT2A
chains in the Genus database with same CATH superfamily
3HMTA 2J8JA 2YILA 4UAOA 1GP9A 4DURA 4R19A 1W8KA 3HMRA 1NK1A 5CT3A 1GMOA 2Q8AA 5CSQA 3SRJA 5I25A 5CS9A 5EOKA 4Z0EA 5COEA 4Z0FA 2Z8WA 2J8LA 4R1CA 3ZLEA 2QJ2A 3HMSA 2KL5A 5CS5A 1HKYA 3MKPA 2Y8RA 2Z8VA 1YXEA 2K13X 1W81A 4R1BA 4YIZA 5CS1A 5CT1A 3SRIA 2LL3A 2HGFA 1GMNA 5CS3A 2YIOA 3ZWZA 1BHTA 2YIPA 2F83A 1Z40A 3SP8A 1I8NA 2QJ4A 4UV6A 2Q8BA 5CP9A 4R1AA 4IUAA 4APLA 4Z09A 5EODA 2X2ZA 3HN4A 4YIVA 4APMA 4A5TS 4Z0DA 2LL4M 5CT2A
chains in the Genus database with same CATH topology
3HMTA 2J8JA 2YILA 4UAOA 1GP9A 4DURA 4R19A 1W8KA 3HMRA 1NK1A 5CT3A 1GMOA 2Q8AA 5CSQA 3SRJA 5I25A 5CS9A 5EOKA 4Z0EA 5COEA 4Z0FA 2Z8WA 2J8LA 4R1CA 3ZLEA 2QJ2A 3HMSA 2KL5A 5CS5A 1HKYA 3MKPA 2Y8RA 2Z8VA 1YXEA 2K13X 1W81A 4R1BA 4YIZA 5CS1A 5CT1A 3SRIA 2LL3A 2HGFA 1GMNA 5CS3A 2YIOA 3ZWZA 1BHTA 2YIPA 2F83A 1Z40A 3SP8A 1I8NA 2QJ4A 4UV6A 2Q8BA 5CP9A 4R1AA 4IUAA 4APLA 4Z09A 5EODA 2X2ZA 3HN4A 4YIVA 4APMA 4A5TS 4Z0DA 2LL4M 5CT2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HMT A;  2J8J A;  2YIL A;  4UAO A;  1GP9 A;  4DUR A;  4R19 A;  1W8K A;  3HMR A;  1NK1 A;  5CT3 A;  1GMO A;  2Q8A A;  5CSQ A;  3SRJ A;  5I25 A;  5CS9 A;  5EOK A;  4Z0E A;  5COE A;  4Z0F A;  2Z8W A;  2J8L A;  4R1C A;  3ZLE A;  2QJ2 A;  3HMS A;  5CS5 A;  1HKY A;  3MKP A;  2Y8R A;  2Z8V A;  1YXE A;  2K13 X;  1W81 A;  4R1B A;  5CS1 A;  5CT1 A;  3SRI A;  2LL3 A;  2HGF A;  1GMN A;  5CS3 A;  2YIO A;  3ZWZ A;  1BHT A;  2YIP A;  2F83 A;  1Z40 A;  3SP8 A;  1I8N A;  2QJ4 A;  4UV6 A;  2Q8B A;  5CP9 A;  4R1A A;  4IUA A;  4APL A;  4Z09 A;  5EOD A;  2X2Z A;  3HN4 A;  4APM A;  4A5T S;  4Z0D A;  2LL4 M;  5CT2 A; 
#chains in the Genus database with same CATH topology
 3HMT A;  2J8J A;  2YIL A;  4UAO A;  1GP9 A;  4DUR A;  4R19 A;  1W8K A;  3HMR A;  1NK1 A;  5CT3 A;  1GMO A;  2Q8A A;  5CSQ A;  3SRJ A;  5I25 A;  5CS9 A;  5EOK A;  4Z0E A;  5COE A;  4Z0F A;  2Z8W A;  2J8L A;  4R1C A;  3ZLE A;  2QJ2 A;  3HMS A;  2KL5 A;  5CS5 A;  1HKY A;  3MKP A;  2Y8R A;  2Z8V A;  1YXE A;  2K13 X;  1W81 A;  4R1B A;  4YIZ A;  5CS1 A;  5CT1 A;  3SRI A;  2LL3 A;  2HGF A;  1GMN A;  5CS3 A;  2YIO A;  3ZWZ A;  1BHT A;  2YIP A;  2F83 A;  1Z40 A;  3SP8 A;  1I8N A;  2QJ4 A;  4UV6 A;  2Q8B A;  5CP9 A;  4R1A A;  4IUA A;  4APL A;  4Z09 A;  5EOD A;  2X2Z A;  3HN4 A;  4YIV A;  4APM A;  4A5T S;  4Z0D A;  2LL4 M;  5CT2 A; 
#chains in the Genus database with same CATH homology
 3HMT A;  2J8J A;  2YIL A;  4UAO A;  1GP9 A;  4DUR A;  4R19 A;  1W8K A;  3HMR A;  1NK1 A;  5CT3 A;  1GMO A;  2Q8A A;  5CSQ A;  3SRJ A;  5I25 A;  5CS9 A;  5EOK A;  4Z0E A;  5COE A;  4Z0F A;  2Z8W A;  2J8L A;  4R1C A;  3ZLE A;  2QJ2 A;  3HMS A;  2KL5 A;  5CS5 A;  1HKY A;  3MKP A;  2Y8R A;  2Z8V A;  1YXE A;  2K13 X;  1W81 A;  4R1B A;  4YIZ A;  5CS1 A;  5CT1 A;  3SRI A;  2LL3 A;  2HGF A;  1GMN A;  5CS3 A;  2YIO A;  3ZWZ A;  1BHT A;  2YIP A;  2F83 A;  1Z40 A;  3SP8 A;  1I8N A;  2QJ4 A;  4UV6 A;  2Q8B A;  5CP9 A;  4R1A A;  4IUA A;  4APL A;  4Z09 A;  5EOD A;  2X2Z A;  3HN4 A;  4YIV A;  4APM A;  4A5T S;  4Z0D A;  2LL4 M;  5CT2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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