3SVIA

Structure of the pto-binding domain of hoppmal generated by limited thermolysin digestion
Total Genus 25
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
25
sequence length
79
structure length
79
Chain Sequence
YTGAVPRANRIVQQLVEAGADLANIRTMFRNMLRGEEMILSRAEQNVFLQHFPDMLPCGIDRNSELAIALREALRRADS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Signaling protein
molecule keywords Type III effector HopAB2
publication title Structural Analysis of HopPmaL Reveals the Presence of a Second Adaptor Domain Common to the HopAB Family of Pseudomonas syringae Type III Effectors.
pubmed doi rcsb
source organism Pseudomonas syringae
total genus 25
structure length 79
sequence length 79
ec nomenclature
pdb deposition date 2011-07-12
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1280.110 Mainly Alpha Up-down Bundle Monooxygenase Monooxygenase 3sviA00
3HGKE 3TJYA 3SVIA 3HGLA
chains in the Genus database with same CATH superfamily
2H4TA 3KD1E 3E4YA 1FZ5E 4J2AA 4JS4A 3SNNA 4RL5A 3TL8B 1FZ2E 4M3RA 3RMCA 3SI6A 4KHQA 1XVEE 5IBKB 4FJGA 4KHYA 3C6NB 1XMFE 3C6PB 1LDKE 4RNGA 4KI4A 4M3TA 1IH7A 4FJMA 3KD5E 4AKGA 2JHCA 2JHAA 2P1MB 1XVDE 3NAEA 3LZIA 1N1CA 2DEBA 4DU1A 1FS1A 5IREA 3QETA 4KHSA 1JW2A 1MHZG 2RKHA 3TJYA 4DTPA 2P1OB 1FZHE 4GAMC 3HP9A 2JH9A 3WSOA 3LZJA 4FJ8A 4DU4A 1FZ3E 3SJJA 3QNOA 3TABA 2LF3A 1MHYG 2B7MA 4M3YA 2MZWB 4I9LA 3QEVA 5H37A 1XU5E 3LDSA 4DTJA 3QEWA 2PFTA 3SVIA 3CFOA 3RWUA 3SUOA 3OGMB 3QEIA 4DTOA 3K2OA 4DTXA 1IG9A 3L1NA 3SUQA 3HGKE 2P5OA 4FJNA 1FYZE 4M42A 4AKIA 4FK0A 3SPZA 3NE6A 3QERA 4ADOA 4FJKA 3C6OB 2P5GA 4M3WA 2OVQB 2FW3A 2OYQA 2P1QB 3RMAA 4FJIA 3HGLA 4X5MA 4AKHA 1XVBE 4DU3A 2JQTA 4FJ9A 2LF6A 2OZMA 1CLQA 2E31A 4B08A 4HCCA 3SQ2A 1WAFA 1NEXB 1XMHE 4DTSA 3TAEA 4M3ZA 3C95A 1Q9YA 3UO3A 4FJJA 3OGLB 3BVOA 1WAJA 4EYWA 3QEPA 2MMBA 2K5SA 3L0MA 4ADNA 4JS5A 3E4WA 3SPYA 4FJ5A 2OVPB 4QNDA 4KHWA 1FZ8E 1Q9XA 4JRPA 3TAGA 2RCUA 4M3XA 1FZ4E 3J27A 3SUNA 3RMDA 1MMOG 3L2OB 3QESA 4FJXA 4RG8A 2VIXA 4JRQA 2YB5A 2HD0A 3CFRA 3J2PA 4DTNA 3UO2A 4EP9A 1FZ7E 1P22A 3NCIA 3TAFA 3N1EA 2JHPA 4DTRA 2VJ4A 4KI6A 2DY4A 2QXFA 3CFPA 1FZ1E 3L8BA 4FK4A 4J2DA 4E3SA 2B1EA 2DTUA 1XVCE 2OVRB 1FZ6E 3SUPA 2OZSA 1FZ0E 2P1PB 3OGKB 4M45A 3SCXA 1XVFE 4FJHA 4J2EA 1FZ9E 4FJ7A 3S9HA 4M41A 2P1NB 4QNCA 4I6JB 3LDBA 4ICGC 3SQ4A 4E4BA 2MW2A 3RMBA 3MKSB 3N1BA 4FJLA 4KHNA 3SQ1A 4DTUA 3NHGA 1FPOA 2B8IA 3QNNA 4AI6A 4HCBA 3V7DB 1XVGE 5IZ7A 2JH8A 1XMGE 3C94A 4EPHA 3NGIA 4IT5A 2FYOA 4X5NA 3QEXA 2E32A 3LD8A 3SQ0A 3UIQA 1FXXA 4FVMA 1XU3E 4M3UA 4J2BA 3CQ8A 4DTMA 2JPNA 1MTYG 1FZIE 4KHUA 3NDKA 1XL3C 2ATQA 3HL8A 4FK2A 2VJ5A 2PFVA 4I9QA
chains in the Genus database with same CATH topology
2H4TA 3KD1E 3E4YA 1FZ5E 4J2AA 4JS4A 3SNNA 4RL5A 3TL8B 1FZ2E 4M3RA 3RMCA 3SI6A 4KHQA 1XVEE 5IBKB 4FJGA 4KHYA 3C6NB 1XMFE 3C6PB 1LDKE 4RNGA 4KI4A 4M3TA 1IH7A 4FJMA 3KD5E 4AKGA 2JHCA 2JHAA 2P1MB 1XVDE 3NAEA 3LZIA 4DU1A 2DEBA 1FS1A 5IREA 3QETA 4KHSA 1MHZG 3TJYA 4DTPA 2P1OB 1FZHE 4GAMC 3HP9A 2JH9A 3WSOA 3LZJA 4FJ8A 4DU4A 1FZ3E 3SJJA 3QNOA 3TABA 2LF3A 1MHYG 2B7MA 4M3YA 2MZWB 4I9LA 3QEVA 5H37A 1XU5E 3LDSA 4DTJA 3QEWA 2PFTA 3SVIA 3CFOA 3RWUA 3SUOA 3OGMB 3QEIA 4DTOA 3K2OA 4DTXA 1IG9A 3L1NA 3SUQA 3HGKE 2P5OA 4FJNA 1FYZE 4M42A 4AKIA 4FK0A 3SPZA 3NE6A 3QERA 4ADOA 4FJKA 3C6OB 2P5GA 4M3WA 2OVQB 2FW3A 2OYQA 2P1QB 3RMAA 4FJIA 3HGLA 4X5MA 4AKHA 1XVBE 4DU3A 4FJ9A 2LF6A 2OZMA 1CLQA 2E31A 4B08A 4HCCA 3SQ2A 1WAFA 1NEXB 1XMHE 4DTSA 3TAEA 4M3ZA 3C95A 1Q9YA 4FJJA 3OGLB 1WAJA 4EYWA 3QEPA 2MMBA 3L0MA 4JS5A 4ADNA 3E4WA 3SPYA 4FJ5A 2OVPB 4QNDA 4KHWA 1FZ8E 1Q9XA 4JRPA 3TAGA 2RCUA 4M3XA 1FZ4E 3J27A 3SUNA 3RMDA 1MMOG 3L2OB 3QESA 4FJXA 4RG8A 2VIXA 4JRQA 2YB5A 2HD0A 3CFRA 3J2PA 4DTNA 4EP9A 1FZ7E 1P22A 3NCIA 3TAFA 3N1EA 2JHPA 4DTRA 2VJ4A 4KI6A 2DY4A 2QXFA 3CFPA 1FZ1E 3L8BA 4FK4A 4J2DA 4E3SA 2B1EA 2DTUA 1XVCE 2OVRB 1FZ6E 3SUPA 2OZSA 1FZ0E 2P1PB 3OGKB 4M45A 3SCXA 1XVFE 4FJHA 4J2EA 1FZ9E 4FJ7A 3S9HA 4M41A 2P1NB 4QNCA 4I6JB 3LDBA 3SQ4A 3RMBA 4E4BA 3MKSB 3N1BA 4FJLA 4KHNA 3SQ1A 4DTUA 3NHGA 2B8IA 3QNNA 4AI6A 4HCBA 3V7DB 1XVGE 5IZ7A 2JH8A 1XMGE 3C94A 4EPHA 3NGIA 2FYOA 4X5NA 3QEXA 2E32A 3LD8A 3SQ0A 3UIQA 1FXXA 4FVMA 1XU3E 4M3UA 4J2BA 3CQ8A 4DTMA 2JPNA 1MTYG 1FZIE 4KHUA 3NDKA 1XL3C 2ATQA 3HL8A 4FK2A 2VJ5A 2PFVA 4I9QA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3HGK E;  3TJY A;  3SVI A;  3HGL A; 
#chains in the Genus database with same CATH topology
 2H4T A;  3KD1 E;  3E4Y A;  1FZ5 E;  4J2A A;  4JS4 A;  3SNN A;  4RL5 A;  3TL8 B;  1FZ2 E;  4M3R A;  3RMC A;  3SI6 A;  4KHQ A;  1XVE E;  5IBK B;  4FJG A;  4KHY A;  3C6N B;  1XMF E;  3C6P B;  1LDK E;  4RNG A;  4KI4 A;  4M3T A;  1IH7 A;  4FJM A;  3KD5 E;  4AKG A;  2JHC A;  2JHA A;  2P1M B;  1XVD E;  3NAE A;  3LZI A;  1N1C A;  2DEB A;  4DU1 A;  1FS1 A;  5IRE A;  3QET A;  4KHS A;  1JW2 A;  1MHZ G;  2RKH A;  3TJY A;  4DTP A;  2P1O B;  1FZH E;  4GAM C;  3HP9 A;  2JH9 A;  3WSO A;  3LZJ A;  4FJ8 A;  4DU4 A;  1FZ3 E;  3SJJ A;  3QNO A;  3TAB A;  2LF3 A;  1MHY G;  2B7M A;  4M3Y A;  2MZW B;  4I9L A;  3QEV A;  5H37 A;  1XU5 E;  3LDS A;  4DTJ A;  3QEW A;  2PFT A;  3SVI A;  3CFO A;  3RWU A;  3SUO A;  3OGM B;  3QEI A;  4DTO A;  3K2O A;  4DTX A;  1IG9 A;  3L1N A;  3SUQ A;  3HGK E;  2P5O A;  4FJN A;  1FYZ E;  4M42 A;  4AKI A;  4FK0 A;  3SPZ A;  3NE6 A;  3QER A;  4ADO A;  4FJK A;  3C6O B;  2P5G A;  4M3W A;  2OVQ B;  2FW3 A;  2OYQ A;  2P1Q B;  3RMA A;  4FJI A;  3HGL A;  4X5M A;  4AKH A;  1XVB E;  4DU3 A;  2JQT A;  4FJ9 A;  2LF6 A;  2OZM A;  1CLQ A;  2E31 A;  4B08 A;  4HCC A;  3SQ2 A;  1WAF A;  1NEX B;  1XMH E;  4DTS A;  3TAE A;  4M3Z A;  3C95 A;  1Q9Y A;  3UO3 A;  4FJJ A;  3OGL B;  3BVO A;  1WAJ A;  4EYW A;  3QEP A;  2MMB A;  2K5S A;  3L0M A;  4ADN A;  4JS5 A;  3E4W A;  3SPY A;  4FJ5 A;  2OVP B;  4QND A;  4KHW A;  1FZ8 E;  1Q9X A;  4JRP A;  3TAG A;  2RCU A;  4M3X A;  1FZ4 E;  3J27 A;  3SUN A;  3RMD A;  1MMO G;  3L2O B;  3QES A;  4FJX A;  4RG8 A;  2VIX A;  4JRQ A;  2YB5 A;  2HD0 A;  3CFR A;  3J2P A;  4DTN A;  3UO2 A;  4EP9 A;  1FZ7 E;  1P22 A;  3NCI A;  3TAF A;  3N1E A;  2JHP A;  4DTR A;  2VJ4 A;  4KI6 A;  2DY4 A;  2QXF A;  3CFP A;  1FZ1 E;  3L8B A;  4FK4 A;  4J2D A;  4E3S A;  2B1E A;  2DTU A;  1XVC E;  2OVR B;  1FZ6 E;  3SUP A;  2OZS A;  1FZ0 E;  2P1P B;  3OGK B;  4M45 A;  3SCX A;  1XVF E;  4FJH A;  4J2E A;  1FZ9 E;  4FJ7 A;  3S9H A;  4M41 A;  2P1N B;  4QNC A;  4I6J B;  3LDB A;  4ICG C;  3SQ4 A;  4E4B A;  2MW2 A;  3RMB A;  3MKS B;  3N1B A;  4FJL A;  4KHN A;  3SQ1 A;  4DTU A;  3NHG A;  1FPO A;  2B8I A;  3QNN A;  4AI6 A;  4HCB A;  3V7D B;  1XVG E;  5IZ7 A;  2JH8 A;  1XMG E;  3C94 A;  4EPH A;  3NGI A;  4IT5 A;  2FYO A;  4X5N A;  3QEX A;  2E32 A;  3LD8 A;  3SQ0 A;  3UIQ A;  1FXX A;  4FVM A;  1XU3 E;  4M3U A;  4J2B A;  3CQ8 A;  4DTM A;  2JPN A;  1MTY G;  1FZI E;  4KHU A;  3NDK A;  1XL3 C;  2ATQ A;  3HL8 A;  4FK2 A;  2VJ5 A;  2PFV A;  4I9Q A; 
#chains in the Genus database with same CATH homology
 2H4T A;  3KD1 E;  3E4Y A;  1FZ5 E;  4J2A A;  4JS4 A;  3SNN A;  4RL5 A;  3TL8 B;  1FZ2 E;  4M3R A;  3RMC A;  3SI6 A;  4KHQ A;  1XVE E;  5IBK B;  4FJG A;  4KHY A;  3C6N B;  1XMF E;  3C6P B;  1LDK E;  4RNG A;  4KI4 A;  4M3T A;  1IH7 A;  4FJM A;  3KD5 E;  4AKG A;  2JHC A;  2JHA A;  2P1M B;  1XVD E;  3NAE A;  3LZI A;  4DU1 A;  2DEB A;  1FS1 A;  5IRE A;  3QET A;  4KHS A;  1MHZ G;  3TJY A;  4DTP A;  2P1O B;  1FZH E;  4GAM C;  3HP9 A;  2JH9 A;  3WSO A;  3LZJ A;  4FJ8 A;  4DU4 A;  1FZ3 E;  3SJJ A;  3QNO A;  3TAB A;  2LF3 A;  1MHY G;  2B7M A;  4M3Y A;  2MZW B;  4I9L A;  3QEV A;  5H37 A;  1XU5 E;  3LDS A;  4DTJ A;  3QEW A;  2PFT A;  3SVI A;  3CFO A;  3RWU A;  3SUO A;  3OGM B;  3QEI A;  4DTO A;  3K2O A;  4DTX A;  1IG9 A;  3L1N A;  3SUQ A;  3HGK E;  2P5O A;  4FJN A;  1FYZ E;  4M42 A;  4AKI A;  4FK0 A;  3SPZ A;  3NE6 A;  3QER A;  4ADO A;  4FJK A;  3C6O B;  2P5G A;  4M3W A;  2OVQ B;  2FW3 A;  2OYQ A;  2P1Q B;  3RMA A;  4FJI A;  3HGL A;  4X5M A;  4AKH A;  1XVB E;  4DU3 A;  4FJ9 A;  2LF6 A;  2OZM A;  1CLQ A;  2E31 A;  4B08 A;  4HCC A;  3SQ2 A;  1WAF A;  1NEX B;  1XMH E;  4DTS A;  3TAE A;  4M3Z A;  3C95 A;  1Q9Y A;  4FJJ A;  3OGL B;  1WAJ A;  4EYW A;  3QEP A;  2MMB A;  3L0M A;  4JS5 A;  4ADN A;  3E4W A;  3SPY A;  4FJ5 A;  2OVP B;  4QND A;  4KHW A;  1FZ8 E;  1Q9X A;  4JRP A;  3TAG A;  2RCU A;  4M3X A;  1FZ4 E;  3J27 A;  3SUN A;  3RMD A;  1MMO G;  3L2O B;  3QES A;  4FJX A;  4RG8 A;  2VIX A;  4JRQ A;  2YB5 A;  2HD0 A;  3CFR A;  3J2P A;  4DTN A;  4EP9 A;  1FZ7 E;  1P22 A;  3NCI A;  3TAF A;  3N1E A;  2JHP A;  4DTR A;  2VJ4 A;  4KI6 A;  2DY4 A;  2QXF A;  3CFP A;  1FZ1 E;  3L8B A;  4FK4 A;  4J2D A;  4E3S A;  2B1E A;  2DTU A;  1XVC E;  2OVR B;  1FZ6 E;  3SUP A;  2OZS A;  1FZ0 E;  2P1P B;  3OGK B;  4M45 A;  3SCX A;  1XVF E;  4FJH A;  4J2E A;  1FZ9 E;  4FJ7 A;  3S9H A;  4M41 A;  2P1N B;  4QNC A;  4I6J B;  3LDB A;  3SQ4 A;  3RMB A;  4E4B A;  3MKS B;  3N1B A;  4FJL A;  4KHN A;  3SQ1 A;  4DTU A;  3NHG A;  2B8I A;  3QNN A;  4AI6 A;  4HCB A;  3V7D B;  1XVG E;  5IZ7 A;  2JH8 A;  1XMG E;  3C94 A;  4EPH A;  3NGI A;  2FYO A;  4X5N A;  3QEX A;  2E32 A;  3LD8 A;  3SQ0 A;  3UIQ A;  1FXX A;  4FVM A;  1XU3 E;  4M3U A;  4J2B A;  3CQ8 A;  4DTM A;  2JPN A;  1MTY G;  1FZI E;  4KHU A;  3NDK A;  1XL3 C;  2ATQ A;  3HL8 A;  4FK2 A;  2VJ5 A;  2PFV A;  4I9Q A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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