3SW9A

Glp (g9a-like protein) set domain in complex with dnmt3ak44me0 peptide
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
261
structure length
261
Chain Sequence
b'VERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Histone-lysine N-methyltransferase EHMT1
publication title MPP8 mediates the interactions between DNA methyltransferase Dnmt3a and H3K9 methyltransferase GLP/G9a.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Transferase
total genus 64
structure length 261
sequence length 261
chains with identical sequence B
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2011-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 3sw9A00
5ARGA 3M53A 3F9WA 3MO2A 3DALA 4NVQA 2IGQA 3VUZA 4JDSA 4JLGA 3QWPA 4AU7A 3FPDA 4J8OA 5AYFA 3IHXA 1MVHA 5LSXA 3N71A 1XQHA 4FMUA 5LSZA 4BUPA 4MI5A 4WUYA 4YNMA 3KMJA 5CCMA 2W5YA 3OXGA 5CCLA 4RZ0A 5TTFA 3EP0A 4I51A 1MUFA 5JIYA 3M54A 5KJMA 3OPEA 3QWVA 3TG5A 3SWCA 5KJNA 3OXFA 4YNDA 2O8JA 4J7FA 3KMTA 5HQ8A 3SW9A 5EX0A 5JHNA 1ML9A 2F69A 3BO5A 3M59A 3S7JA 3CBPA 3M58A 3RIBA 4NJ5A 3MO5A 5F5EA 3HNAA 3OXLA 5CPRB 2R3AA 3RU0A 4YPEA 1MVXA 2QPWA 4IJDA 1N6CA 3M57A 4O30A 3M56A 4O6FA 3F9XA 5T0KA 1N6AA 4YPUA 3DB5A 3F9ZA 2BQZA 4Z4PA 3KMAA 5TH7A 3MO0A 5F6KC 5JJ0A 4J7IA 5EX3A 3S8PA 3F9YA 3M5AA 4LDGA 1N3JA 3S7BA 1O9SA 4E47A 5ARFA 4QEPA 5JINA 3QWWA 5F6LA 2RFIA 5EG2A 4MI0A 4YNPA 3OOIA 3RAYA 5TEGA 5KJKA 1H3IA 3S7FA 4QENA 3MEKA 5F59A 1ZKKA 3RJWA 4IJ8A 4YPAA 5KJLA 3K5KA 2G46A 3M55A 3CBMA 3OS5A 4J83A 3TG4A 3RQ4A 2W5ZA 3VV0A 4QEOA 1PEGA 1MT6A 3S7DA 3CBOA 4C1QA 5HI7A 2JV0A 3PDNA 5T5GA 5T0MA 4H12A
chains in the Genus database with same CATH superfamily
5ARGA 3M53A 3F9WA 3MO2A 3DALA 4NVQA 2IGQA 3VUZA 4JDSA 4JLGA 3QWPA 4AU7A 3FPDA 4J8OA 5AYFA 3IHXA 1MVHA 5LSXA 3N71A 1XQHA 4FMUA 5LSZA 4BUPA 4MI5A 4WUYA 4YNMA 3KMJA 5CCMA 2W5YA 3OXGA 5CCLA 4RZ0A 5TTFA 3EP0A 4I51A 1MUFA 5JIYA 3M54A 5KJMA 3OPEA 3QWVA 3TG5A 3SWCA 5KJNA 3OXFA 4YNDA 2O8JA 4J7FA 3KMTA 5HQ8A 3SW9A 5EX0A 5JHNA 1ML9A 2F69A 3BO5A 3M59A 3S7JA 3CBPA 3M58A 3RIBA 4NJ5A 3MO5A 5F5EA 3HNAA 3OXLA 5CPRB 2R3AA 3RU0A 4YPEA 1MVXA 2QPWA 4IJDA 1N6CA 3M57A 4O30A 3M56A 4O6FA 3F9XA 5T0KA 1N6AA 4YPUA 3DB5A 3F9ZA 2BQZA 4Z4PA 3KMAA 5TH7A 3MO0A 5F6KC 5JJ0A 4J7IA 5EX3A 3S8PA 3F9YA 3M5AA 4LDGA 1N3JA 3S7BA 1O9SA 4E47A 5ARFA 4QEPA 5JINA 3QWWA 5F6LA 2RFIA 5EG2A 4MI0A 4YNPA 3OOIA 3RAYA 5TEGA 5KJKA 1H3IA 3S7FA 4QENA 3MEKA 5F59A 1ZKKA 3RJWA 4IJ8A 4YPAA 5KJLA 3K5KA 2G46A 3M55A 3CBMA 3OS5A 4J83A 3TG4A 3RQ4A 2W5ZA 3VV0A 4QEOA 1PEGA 1MT6A 3S7DA 3CBOA 4C1QA 5HI7A 2JV0A 3PDNA 5T5GA 5T0MA 4H12A
chains in the Genus database with same CATH topology
5ARGA 3M53A 3F9WA 3MO2A 3DALA 4NVQA 2IGQA 3VUZA 4JDSA 4JLGA 3QWPA 4AU7A 3FPDA 4J8OA 5AYFA 3IHXA 1MVHA 5LSXA 3N71A 1XQHA 4FMUA 5LSZA 4BUPA 4MI5A 4WUYA 4YNMA 3KMJA 5CCMA 2W5YA 3OXGA 5CCLA 4RZ0A 5TTFA 3EP0A 4I51A 1MUFA 5JIYA 3M54A 5KJMA 3OPEA 3QWVA 3TG5A 3SWCA 5KJNA 3OXFA 4YNDA 2O8JA 4J7FA 3KMTA 5HQ8A 3SW9A 5EX0A 5JHNA 1ML9A 2F69A 3BO5A 3M59A 3S7JA 3CBPA 3M58A 3RIBA 4NJ5A 3MO5A 5F5EA 3HNAA 3OXLA 5CPRB 2R3AA 3RU0A 4YPEA 1MVXA 2QPWA 4IJDA 1N6CA 3M57A 4O30A 3M56A 4O6FA 3F9XA 5T0KA 1N6AA 4YPUA 3DB5A 3F9ZA 2BQZA 4Z4PA 3KMAA 5TH7A 3MO0A 5F6KC 5JJ0A 4J7IA 5EX3A 3S8PA 3F9YA 3M5AA 4LDGA 1N3JA 3S7BA 1O9SA 4E47A 5ARFA 4QEPA 5JINA 3QWWA 5F6LA 2RFIA 5EG2A 4MI0A 4YNPA 3OOIA 3RAYA 5TEGA 5KJKA 1H3IA 3S7FA 4QENA 3MEKA 5F59A 1ZKKA 3RJWA 4IJ8A 4YPAA 5KJLA 3K5KA 2G46A 3M55A 3CBMA 3OS5A 4J83A 3TG4A 3RQ4A 2W5ZA 3VV0A 4QEOA 1PEGA 1MT6A 3S7DA 3CBOA 4C1QA 5HI7A 2JV0A 3PDNA 5T5GA 5T0MA 4H12A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5ARG A;  3M53 A;  3F9W A;  3MO2 A;  3DAL A;  4NVQ A;  2IGQ A;  3VUZ A;  4JDS A;  4JLG A;  3QWP A;  4AU7 A;  3FPD A;  4J8O A;  5AYF A;  3IHX A;  1MVH A;  5LSX A;  3N71 A;  1XQH A;  4FMU A;  5LSZ A;  4BUP A;  4MI5 A;  4WUY A;  4YNM A;  3KMJ A;  5CCM A;  2W5Y A;  3OXG A;  5CCL A;  4RZ0 A;  5TTF A;  3EP0 A;  4I51 A;  1MUF A;  5JIY A;  3M54 A;  5KJM A;  3OPE A;  3QWV A;  3TG5 A;  3SWC A;  5KJN A;  3OXF A;  4YND A;  2O8J A;  4J7F A;  3KMT A;  5HQ8 A;  3SW9 A;  5EX0 A;  5JHN A;  1ML9 A;  2F69 A;  3BO5 A;  3M59 A;  3S7J A;  3CBP A;  3M58 A;  3RIB A;  4NJ5 A;  3MO5 A;  5F5E A;  3HNA A;  3OXL A;  5CPR B;  2R3A A;  3RU0 A;  4YPE A;  1MVX A;  2QPW A;  4IJD A;  1N6C A;  3M57 A;  4O30 A;  3M56 A;  4O6F A;  3F9X A;  5T0K A;  1N6A A;  4YPU A;  3DB5 A;  3F9Z A;  2BQZ A;  4Z4P A;  3KMA A;  5TH7 A;  3MO0 A;  5F6K C;  5JJ0 A;  4J7I A;  5EX3 A;  3S8P A;  3F9Y A;  3M5A A;  4LDG A;  1N3J A;  3S7B A;  1O9S A;  4E47 A;  5ARF A;  4QEP A;  5JIN A;  3QWW A;  5F6L A;  2RFI A;  5EG2 A;  4MI0 A;  4YNP A;  3OOI A;  3RAY A;  5TEG A;  5KJK A;  1H3I A;  3S7F A;  4QEN A;  3MEK A;  5F59 A;  1ZKK A;  3RJW A;  4IJ8 A;  4YPA A;  5KJL A;  3K5K A;  2G46 A;  3M55 A;  3CBM A;  3OS5 A;  4J83 A;  3TG4 A;  3RQ4 A;  2W5Z A;  3VV0 A;  4QEO A;  1PEG A;  1MT6 A;  3S7D A;  3CBO A;  4C1Q A;  5HI7 A;  2JV0 A;  3PDN A;  5T5G A;  5T0M A;  4H12 A; 
#chains in the Genus database with same CATH topology
 5ARG A;  3M53 A;  3F9W A;  3MO2 A;  3DAL A;  4NVQ A;  2IGQ A;  3VUZ A;  4JDS A;  4JLG A;  3QWP A;  4AU7 A;  3FPD A;  4J8O A;  5AYF A;  3IHX A;  1MVH A;  5LSX A;  3N71 A;  1XQH A;  4FMU A;  5LSZ A;  4BUP A;  4MI5 A;  4WUY A;  4YNM A;  3KMJ A;  5CCM A;  2W5Y A;  3OXG A;  5CCL A;  4RZ0 A;  5TTF A;  3EP0 A;  4I51 A;  1MUF A;  5JIY A;  3M54 A;  5KJM A;  3OPE A;  3QWV A;  3TG5 A;  3SWC A;  5KJN A;  3OXF A;  4YND A;  2O8J A;  4J7F A;  3KMT A;  5HQ8 A;  3SW9 A;  5EX0 A;  5JHN A;  1ML9 A;  2F69 A;  3BO5 A;  3M59 A;  3S7J A;  3CBP A;  3M58 A;  3RIB A;  4NJ5 A;  3MO5 A;  5F5E A;  3HNA A;  3OXL A;  5CPR B;  2R3A A;  3RU0 A;  4YPE A;  1MVX A;  2QPW A;  4IJD A;  1N6C A;  3M57 A;  4O30 A;  3M56 A;  4O6F A;  3F9X A;  5T0K A;  1N6A A;  4YPU A;  3DB5 A;  3F9Z A;  2BQZ A;  4Z4P A;  3KMA A;  5TH7 A;  3MO0 A;  5F6K C;  5JJ0 A;  4J7I A;  5EX3 A;  3S8P A;  3F9Y A;  3M5A A;  4LDG A;  1N3J A;  3S7B A;  1O9S A;  4E47 A;  5ARF A;  4QEP A;  5JIN A;  3QWW A;  5F6L A;  2RFI A;  5EG2 A;  4MI0 A;  4YNP A;  3OOI A;  3RAY A;  5TEG A;  5KJK A;  1H3I A;  3S7F A;  4QEN A;  3MEK A;  5F59 A;  1ZKK A;  3RJW A;  4IJ8 A;  4YPA A;  5KJL A;  3K5K A;  2G46 A;  3M55 A;  3CBM A;  3OS5 A;  4J83 A;  3TG4 A;  3RQ4 A;  2W5Z A;  3VV0 A;  4QEO A;  1PEG A;  1MT6 A;  3S7D A;  3CBO A;  4C1Q A;  5HI7 A;  2JV0 A;  3PDN A;  5T5G A;  5T0M A;  4H12 A; 
#chains in the Genus database with same CATH homology
 5ARG A;  3M53 A;  3F9W A;  3MO2 A;  3DAL A;  4NVQ A;  2IGQ A;  3VUZ A;  4JDS A;  4JLG A;  3QWP A;  4AU7 A;  3FPD A;  4J8O A;  5AYF A;  3IHX A;  1MVH A;  5LSX A;  3N71 A;  1XQH A;  4FMU A;  5LSZ A;  4BUP A;  4MI5 A;  4WUY A;  4YNM A;  3KMJ A;  5CCM A;  2W5Y A;  3OXG A;  5CCL A;  4RZ0 A;  5TTF A;  3EP0 A;  4I51 A;  1MUF A;  5JIY A;  3M54 A;  5KJM A;  3OPE A;  3QWV A;  3TG5 A;  3SWC A;  5KJN A;  3OXF A;  4YND A;  2O8J A;  4J7F A;  3KMT A;  5HQ8 A;  3SW9 A;  5EX0 A;  5JHN A;  1ML9 A;  2F69 A;  3BO5 A;  3M59 A;  3S7J A;  3CBP A;  3M58 A;  3RIB A;  4NJ5 A;  3MO5 A;  5F5E A;  3HNA A;  3OXL A;  5CPR B;  2R3A A;  3RU0 A;  4YPE A;  1MVX A;  2QPW A;  4IJD A;  1N6C A;  3M57 A;  4O30 A;  3M56 A;  4O6F A;  3F9X A;  5T0K A;  1N6A A;  4YPU A;  3DB5 A;  3F9Z A;  2BQZ A;  4Z4P A;  3KMA A;  5TH7 A;  3MO0 A;  5F6K C;  5JJ0 A;  4J7I A;  5EX3 A;  3S8P A;  3F9Y A;  3M5A A;  4LDG A;  1N3J A;  3S7B A;  1O9S A;  4E47 A;  5ARF A;  4QEP A;  5JIN A;  3QWW A;  5F6L A;  2RFI A;  5EG2 A;  4MI0 A;  4YNP A;  3OOI A;  3RAY A;  5TEG A;  5KJK A;  1H3I A;  3S7F A;  4QEN A;  3MEK A;  5F59 A;  1ZKK A;  3RJW A;  4IJ8 A;  4YPA A;  5KJL A;  3K5K A;  2G46 A;  3M55 A;  3CBM A;  3OS5 A;  4J83 A;  3TG4 A;  3RQ4 A;  2W5Z A;  3VV0 A;  4QEO A;  1PEG A;  1MT6 A;  3S7D A;  3CBO A;  4C1Q A;  5HI7 A;  2JV0 A;  3PDN A;  5T5G A;  5T0M A;  4H12 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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