3SW9A

Glp (g9a-like protein) set domain in complex with dnmt3ak44me0 peptide
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
261
structure length
261
Chain Sequence
VERIVSRDIARGYERIPIPCVNAVDSEPCPSNYKYVSQNCVTSPMNIDRNITHLQYCVCIDDCSSSNCMCGQLSMRCWYDKDGRLLPEFNMAEPPLIFECNHACSCWRNCRNRVVQNGLRARLQLYRTRDMGWGVRSLQDIPPGTFVCEYVGELISDSEADVREEDSYLFDLDNKDGEVYCIDARFYGNVSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDIKGKLFSCRCGSPKCRHS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title MPP8 mediates the interactions between DNA methyltransferase Dnmt3a and H3K9 methyltransferase GLP/G9a.
pubmed doi rcsb
source organism Homo sapiens
molecule tags Transferase
molecule keywords Histone-lysine N-methyltransferase EHMT1
total genus 64
structure length 261
sequence length 261
chains with identical sequence B
ec nomenclature ec 2.1.1.43: Histone-lysine N-methyltransferase.
pdb deposition date 2011-07-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00856 SET SET domain
A PF05033 Pre-SET Pre-SET motif
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.270.10 Mainly Beta Beta Complex Beta-clip-like SET domain 3sw9A00
3SW9A 4MI0A 4J8OA 3M54A 4BUPA 3BO5A 3OXGA 4NJ5A 3MO0A 5TEGA 5T5GA 3DB5A 3TG5A 1MVHA 1MT6A 2O8JA 4J7FA 3M57A 1H3IA 3MO5A 5F6LA 5EX0A 3RJWA 3M59A 4YNMA 3SWCA 4LDGA 5F5EA 3CBMA 3IHXA 3F9WA 3RU0A 1N6CA 4C1QA 4QEPA 3TG4A 3M53A 3M58A 5KJMA 5JIYA 3VV0A 3N71A 5JINA 3F9ZA 3MEKA 5ARFA 4QEOA 2R3AA 5KJLA 5T0MA 3QWWA 4FMUA 4IJ8A 3M55A 5CCMA 1XQHA 5ARGA 3QWVA 3M56A 4NVQA 3M5AA 5AYFA 2W5YA 3DALA 4J83A 5EX3A 3CBPA 3S7FA 2JV0A 2IGQA 3QWPA 2G46A 3CBOA 3OOIA 4MI5A 1ML9A 2QPWA 3F9YA 4AU7A 3OS5A 5KJKA 3F9XA 4JLGA 4O6FA 4JDSA 5F6KC 3S7JA 4J7IA 1MVXA 5TH7A 4E47A 3K5KA 3RQ4A 1MUFA 1ZKKA 4I51A 4O30A 1N6AA 5LSZA 4RZ0A 4YPEA 3EP0A 2RFIA 5T0KA 5F59A 1O9SA 4QENA 4WUYA 5CCLA 3VUZA 2W5ZA 4IJDA 4YPAA 5KJNA 2BQZA 3HNAA 5TTFA 5JHNA 5HI7A 5CPRB 4H12A 3OPEA 3RAYA 3KMJA 4YNPA 5LSXA 1PEGA 3OXFA 3PDNA 4Z4PA 5EG2A 3MO2A 3S8PA 3S7DA 2F69A 3KMAA 1N3JA 5HQ8A 3KMTA 3S7BA 3FPDA 4YNDA 3RIBA 5JJ0A 3OXLA 4YPUA
chains in the Genus database with same CATH superfamily
3SW9A 4MI0A 4J8OA 3M54A 4BUPA 3BO5A 3OXGA 4NJ5A 3MO0A 5TEGA 5T5GA 3DB5A 3TG5A 1MVHA 1MT6A 2O8JA 4J7FA 3M57A 1H3IA 3MO5A 5F6LA 5EX0A 3RJWA 3M59A 4YNMA 3SWCA 4LDGA 5F5EA 3CBMA 3IHXA 3F9WA 3RU0A 1N6CA 4C1QA 4QEPA 3TG4A 3M53A 3M58A 5KJMA 5JIYA 3VV0A 3N71A 5JINA 3F9ZA 3MEKA 5ARFA 4QEOA 2R3AA 5KJLA 5T0MA 3QWWA 4FMUA 4IJ8A 3M55A 5CCMA 1XQHA 5ARGA 3QWVA 3M56A 4NVQA 3M5AA 5AYFA 2W5YA 3DALA 4J83A 5EX3A 3CBPA 3S7FA 2JV0A 2IGQA 3QWPA 2G46A 3CBOA 3OOIA 4MI5A 1ML9A 2QPWA 3F9YA 4AU7A 3OS5A 5KJKA 3F9XA 4JLGA 4O6FA 4JDSA 5F6KC 3S7JA 4J7IA 1MVXA 5TH7A 4E47A 3K5KA 3RQ4A 1MUFA 1ZKKA 4I51A 4O30A 1N6AA 5LSZA 4RZ0A 4YPEA 3EP0A 2RFIA 5T0KA 5F59A 1O9SA 4QENA 4WUYA 5CCLA 3VUZA 2W5ZA 4IJDA 4YPAA 5KJNA 2BQZA 3HNAA 5TTFA 5JHNA 5HI7A 5CPRB 4H12A 3OPEA 3RAYA 3KMJA 4YNPA 5LSXA 1PEGA 3OXFA 3PDNA 4Z4PA 5EG2A 3MO2A 3S8PA 3S7DA 2F69A 3KMAA 1N3JA 5HQ8A 3KMTA 3S7BA 3FPDA 4YNDA 3RIBA 5JJ0A 3OXLA 4YPUA
chains in the Genus database with same CATH topology
3SW9A 4MI0A 4J8OA 3M54A 4BUPA 3BO5A 3OXGA 4NJ5A 3MO0A 5TEGA 5T5GA 3DB5A 3TG5A 1MVHA 1MT6A 2O8JA 4J7FA 3M57A 1H3IA 3MO5A 5F6LA 5EX0A 3RJWA 3M59A 4YNMA 3SWCA 4LDGA 5F5EA 3CBMA 3IHXA 3F9WA 3RU0A 1N6CA 4C1QA 4QEPA 3TG4A 3M53A 3M58A 5KJMA 5JIYA 3VV0A 3N71A 5JINA 3F9ZA 3MEKA 5ARFA 4QEOA 2R3AA 5KJLA 5T0MA 3QWWA 4FMUA 4IJ8A 3M55A 5CCMA 1XQHA 5ARGA 3QWVA 3M56A 4NVQA 3M5AA 5AYFA 2W5YA 3DALA 4J83A 5EX3A 3CBPA 3S7FA 2JV0A 2IGQA 3QWPA 2G46A 3CBOA 3OOIA 4MI5A 1ML9A 2QPWA 3F9YA 4AU7A 3OS5A 5KJKA 3F9XA 4JLGA 4O6FA 4JDSA 5F6KC 3S7JA 4J7IA 1MVXA 5TH7A 4E47A 3K5KA 3RQ4A 1MUFA 1ZKKA 4I51A 4O30A 1N6AA 5LSZA 4RZ0A 4YPEA 3EP0A 2RFIA 5T0KA 5F59A 1O9SA 4QENA 4WUYA 5CCLA 3VUZA 2W5ZA 4IJDA 4YPAA 5KJNA 2BQZA 3HNAA 5TTFA 5JHNA 5HI7A 5CPRB 4H12A 3OPEA 3RAYA 3KMJA 4YNPA 5LSXA 1PEGA 3OXFA 3PDNA 4Z4PA 5EG2A 3MO2A 3S8PA 3S7DA 2F69A 3KMAA 1N3JA 5HQ8A 3KMTA 3S7BA 3FPDA 4YNDA 3RIBA 5JJ0A 3OXLA 4YPUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SW9 A;  4MI0 A;  4J8O A;  3M54 A;  4BUP A;  3BO5 A;  3OXG A;  4NJ5 A;  3MO0 A;  5TEG A;  5T5G A;  3DB5 A;  3TG5 A;  1MVH A;  1MT6 A;  2O8J A;  4J7F A;  3M57 A;  1H3I A;  3MO5 A;  5F6L A;  5EX0 A;  3RJW A;  3M59 A;  4YNM A;  3SWC A;  4LDG A;  5F5E A;  3CBM A;  3IHX A;  3F9W A;  3RU0 A;  1N6C A;  4C1Q A;  4QEP A;  3TG4 A;  3M53 A;  3M58 A;  5KJM A;  5JIY A;  3VV0 A;  3N71 A;  5JIN A;  3F9Z A;  3MEK A;  5ARF A;  4QEO A;  2R3A A;  5KJL A;  5T0M A;  3QWW A;  4FMU A;  4IJ8 A;  3M55 A;  5CCM A;  1XQH A;  5ARG A;  3QWV A;  3M56 A;  4NVQ A;  3M5A A;  5AYF A;  2W5Y A;  3DAL A;  4J83 A;  5EX3 A;  3CBP A;  3S7F A;  2JV0 A;  2IGQ A;  3QWP A;  2G46 A;  3CBO A;  3OOI A;  4MI5 A;  1ML9 A;  2QPW A;  3F9Y A;  4AU7 A;  3OS5 A;  5KJK A;  3F9X A;  4JLG A;  4O6F A;  4JDS A;  5F6K C;  3S7J A;  4J7I A;  1MVX A;  5TH7 A;  4E47 A;  3K5K A;  3RQ4 A;  1MUF A;  1ZKK A;  4I51 A;  4O30 A;  1N6A A;  5LSZ A;  4RZ0 A;  4YPE A;  3EP0 A;  2RFI A;  5T0K A;  5F59 A;  1O9S A;  4QEN A;  4WUY A;  5CCL A;  3VUZ A;  2W5Z A;  4IJD A;  4YPA A;  5KJN A;  2BQZ A;  3HNA A;  5TTF A;  5JHN A;  5HI7 A;  5CPR B;  4H12 A;  3OPE A;  3RAY A;  3KMJ A;  4YNP A;  5LSX A;  1PEG A;  3OXF A;  3PDN A;  4Z4P A;  5EG2 A;  3MO2 A;  3S8P A;  3S7D A;  2F69 A;  3KMA A;  1N3J A;  5HQ8 A;  3KMT A;  3S7B A;  3FPD A;  4YND A;  3RIB A;  5JJ0 A;  3OXL A;  4YPU A; 
#chains in the Genus database with same CATH topology
 3SW9 A;  4MI0 A;  4J8O A;  3M54 A;  4BUP A;  3BO5 A;  3OXG A;  4NJ5 A;  3MO0 A;  5TEG A;  5T5G A;  3DB5 A;  3TG5 A;  1MVH A;  1MT6 A;  2O8J A;  4J7F A;  3M57 A;  1H3I A;  3MO5 A;  5F6L A;  5EX0 A;  3RJW A;  3M59 A;  4YNM A;  3SWC A;  4LDG A;  5F5E A;  3CBM A;  3IHX A;  3F9W A;  3RU0 A;  1N6C A;  4C1Q A;  4QEP A;  3TG4 A;  3M53 A;  3M58 A;  5KJM A;  5JIY A;  3VV0 A;  3N71 A;  5JIN A;  3F9Z A;  3MEK A;  5ARF A;  4QEO A;  2R3A A;  5KJL A;  5T0M A;  3QWW A;  4FMU A;  4IJ8 A;  3M55 A;  5CCM A;  1XQH A;  5ARG A;  3QWV A;  3M56 A;  4NVQ A;  3M5A A;  5AYF A;  2W5Y A;  3DAL A;  4J83 A;  5EX3 A;  3CBP A;  3S7F A;  2JV0 A;  2IGQ A;  3QWP A;  2G46 A;  3CBO A;  3OOI A;  4MI5 A;  1ML9 A;  2QPW A;  3F9Y A;  4AU7 A;  3OS5 A;  5KJK A;  3F9X A;  4JLG A;  4O6F A;  4JDS A;  5F6K C;  3S7J A;  4J7I A;  1MVX A;  5TH7 A;  4E47 A;  3K5K A;  3RQ4 A;  1MUF A;  1ZKK A;  4I51 A;  4O30 A;  1N6A A;  5LSZ A;  4RZ0 A;  4YPE A;  3EP0 A;  2RFI A;  5T0K A;  5F59 A;  1O9S A;  4QEN A;  4WUY A;  5CCL A;  3VUZ A;  2W5Z A;  4IJD A;  4YPA A;  5KJN A;  2BQZ A;  3HNA A;  5TTF A;  5JHN A;  5HI7 A;  5CPR B;  4H12 A;  3OPE A;  3RAY A;  3KMJ A;  4YNP A;  5LSX A;  1PEG A;  3OXF A;  3PDN A;  4Z4P A;  5EG2 A;  3MO2 A;  3S8P A;  3S7D A;  2F69 A;  3KMA A;  1N3J A;  5HQ8 A;  3KMT A;  3S7B A;  3FPD A;  4YND A;  3RIB A;  5JJ0 A;  3OXL A;  4YPU A; 
#chains in the Genus database with same CATH homology
 3SW9 A;  4MI0 A;  4J8O A;  3M54 A;  4BUP A;  3BO5 A;  3OXG A;  4NJ5 A;  3MO0 A;  5TEG A;  5T5G A;  3DB5 A;  3TG5 A;  1MVH A;  1MT6 A;  2O8J A;  4J7F A;  3M57 A;  1H3I A;  3MO5 A;  5F6L A;  5EX0 A;  3RJW A;  3M59 A;  4YNM A;  3SWC A;  4LDG A;  5F5E A;  3CBM A;  3IHX A;  3F9W A;  3RU0 A;  1N6C A;  4C1Q A;  4QEP A;  3TG4 A;  3M53 A;  3M58 A;  5KJM A;  5JIY A;  3VV0 A;  3N71 A;  5JIN A;  3F9Z A;  3MEK A;  5ARF A;  4QEO A;  2R3A A;  5KJL A;  5T0M A;  3QWW A;  4FMU A;  4IJ8 A;  3M55 A;  5CCM A;  1XQH A;  5ARG A;  3QWV A;  3M56 A;  4NVQ A;  3M5A A;  5AYF A;  2W5Y A;  3DAL A;  4J83 A;  5EX3 A;  3CBP A;  3S7F A;  2JV0 A;  2IGQ A;  3QWP A;  2G46 A;  3CBO A;  3OOI A;  4MI5 A;  1ML9 A;  2QPW A;  3F9Y A;  4AU7 A;  3OS5 A;  5KJK A;  3F9X A;  4JLG A;  4O6F A;  4JDS A;  5F6K C;  3S7J A;  4J7I A;  1MVX A;  5TH7 A;  4E47 A;  3K5K A;  3RQ4 A;  1MUF A;  1ZKK A;  4I51 A;  4O30 A;  1N6A A;  5LSZ A;  4RZ0 A;  4YPE A;  3EP0 A;  2RFI A;  5T0K A;  5F59 A;  1O9S A;  4QEN A;  4WUY A;  5CCL A;  3VUZ A;  2W5Z A;  4IJD A;  4YPA A;  5KJN A;  2BQZ A;  3HNA A;  5TTF A;  5JHN A;  5HI7 A;  5CPR B;  4H12 A;  3OPE A;  3RAY A;  3KMJ A;  4YNP A;  5LSX A;  1PEG A;  3OXF A;  3PDN A;  4Z4P A;  5EG2 A;  3MO2 A;  3S8P A;  3S7D A;  2F69 A;  3KMA A;  1N3J A;  5HQ8 A;  3KMT A;  3S7B A;  3FPD A;  4YND A;  3RIB A;  5JJ0 A;  3OXL A;  4YPU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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