3SZSA

Crystal structure analysis of hellethionin d
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
42
structure length
42
Chain Sequence
KSCCRNTLARNCYNACRFTGGSQPTCGILCDCIHVTTTTCPS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Toxin
molecule keywords Hellethionin-D
publication title Crystal Structure Analysis of Hellethionin D
rcsb
total genus 12
structure length 42
sequence length 42
chains with identical sequence B, C, D, E, F, G
ec nomenclature
pdb deposition date 2011-07-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 3szsA00
2V9BA 2EYAA 3NIRA 1JMNA 1CBNA 1NBLA 1CCMA 2EYDA 1YVAA 2FD7A 1AB1A 1JMPA 1CCNA 1JXYA 1JXTA 1ED0A 1CXRA 1YV8A 3UE7B 2PLHA 1OKHA 3SZSA 2FD9A 2EYBA 4FC1A 3U7TA 1ORLA 1JXUA 1CRNA 1JXXA 1WUWA 2EYCA 3C8PA 1BHPA 1CNRA 1JXWA 1EJGA
chains in the Genus database with same CATH superfamily
2V9BA 2EYAA 3NIRA 1JMNA 1CBNA 1NBLA 1CCMA 2EYDA 1YVAA 1H5WA 2FD7A 1AB1A 1JMPA 1CCNA 1IJGA 1JXYA 1JXTA 1ED0A 1CXRA 1YV8A 3UE7B 2PLHA 1OKHA 3SZSA 1JNBA 2FD9A 2EYBA 4FC1A 3U7TA 1ORLA 1JXUA 1CRNA 1JXXA 1WUWA 2EYCA 3C8PA 1BHPA 1CNRA 1JXWA 1EJGA 1FOUA
chains in the Genus database with same CATH topology
2V9BA 2EYAA 3NIRA 1JMNA 1CBNA 1NBLA 1CCMA 2EYDA 1YVAA 2FD7A 1AB1A 1JMPA 1CCNA 1JXYA 1JXTA 1ED0A 1CXRA 1YV8A 3UE7B 2PLHA 1OKHA 3SZSA 2FD9A 2EYBA 4FC1A 3U7TA 1ORLA 1JXUA 1CRNA 1JXXA 1WUWA 2EYCA 3C8PA 1BHPA 1CNRA 1JXWA 1EJGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2V9B A;  2EYA A;  3NIR A;  1JMN A;  1CBN A;  1NBL A;  1CCM A;  2EYD A;  1YVA A;  2FD7 A;  1AB1 A;  1JMP A;  1CCN A;  1JXY A;  1JXT A;  1ED0 A;  1CXR A;  1YV8 A;  3UE7 B;  2PLH A;  1OKH A;  3SZS A;  2FD9 A;  2EYB A;  4FC1 A;  3U7T A;  1ORL A;  1JXU A;  1CRN A;  1JXX A;  1WUW A;  2EYC A;  3C8P A;  1BHP A;  1CNR A;  1JXW A;  1EJG A; 
#chains in the Genus database with same CATH topology
 2V9B A;  2EYA A;  3NIR A;  1JMN A;  1CBN A;  1NBL A;  1CCM A;  2EYD A;  1YVA A;  1H5W A;  2FD7 A;  1AB1 A;  1JMP A;  1CCN A;  1IJG A;  1JXY A;  1JXT A;  1ED0 A;  1CXR A;  1YV8 A;  3UE7 B;  2PLH A;  1OKH A;  3SZS A;  1JNB A;  2FD9 A;  2EYB A;  4FC1 A;  3U7T A;  1ORL A;  1JXU A;  1CRN A;  1JXX A;  1WUW A;  2EYC A;  3C8P A;  1BHP A;  1CNR A;  1JXW A;  1EJG A;  1FOU A; 
#chains in the Genus database with same CATH homology
 2V9B A;  2EYA A;  3NIR A;  1JMN A;  1CBN A;  1NBL A;  1CCM A;  2EYD A;  1YVA A;  2FD7 A;  1AB1 A;  1JMP A;  1CCN A;  1JXY A;  1JXT A;  1ED0 A;  1CXR A;  1YV8 A;  3UE7 B;  2PLH A;  1OKH A;  3SZS A;  2FD9 A;  2EYB A;  4FC1 A;  3U7T A;  1ORL A;  1JXU A;  1CRN A;  1JXX A;  1WUW A;  2EYC A;  3C8P A;  1BHP A;  1CNR A;  1JXW A;  1EJG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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