3SZVA

Crystal structure of pseudomonas aeruginosa occk3 (opdo)
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
393
structure length
364
Chain Sequence
ENLYFQGLEDLVEDSHASLELRNFYFNRDFRDEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRLILSYSLALW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Pyroglutatmate porin OpdO
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
total genus 104
structure length 364
sequence length 393
ec nomenclature
pdb deposition date 2011-07-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3szvA01
4LSFA 3UU2A 4FOZA 2FGRA 1OPFA 1PHOA 3NSGA 1BH3A 1GFOA 2XE2A 5DL7A 1HXTA 2K4TA 4LSHA 1H6S1 5FVNA 3POXA 4KR8A 1HXUA 6PRNA 3SZVA 3SZDA 4RJXA 3SY7A 3SY9A 2ZLDA 4LSEA 5PRNA 4C69X 4D65A 2FGQX 2XE5A 2Y0KA 4LSIA 2XG6A 4GCSA 2O4VA 8PRNA 1BT9A 4D64A 3VZWX 4FT6A 4FSPA 2Y2XA 3T24A 1MPFA 3VZUX 1GFQA 5DL6A 2J4UP 3POUA 2XE3A 4FMSA 1E54A 3T20A 2Y0HA 3VY8X 4AUIA 5DL5A 1PRNA 3UPGA 3SYBA 4GCQA 3O0EA 1OSMA 3PORA 3JTYA 1GFMA 3HW9A 3T0SA 3SYSA 2ZFGA 3WI4A 3POQA 5JDPA 4FRXA 2ODJA 3FYXA 3EMNX 4KR4A 3K19A 4FRTA 2PORA 1GFPA 2PRNA 3PRNA 4D5UA 7PRNA 2XE1A 3WI5A 3A2SX 4BUMX 4FSOA 2OMFA 5DL8A 1GFNA 2QTKA 2J1NA 3HWBA 2Y0LA 3VZTX 4KRAA 4RJWA 3VY9X 4JFBA 4GCPA 1HXXA
chains in the Genus database with same CATH superfamily
3G7GA 3LK3A 4AYEC 2IWVA 4LSFA 3WU2O 4Z3TA 4CTDA 5GV0A 1MM5A 3UU2A 3BRZA 2FGRA 4FOZA 1OPFA 1YS5A 2WJQA 3AA7B 3DZMA 4O49A 4IL6O 1PHOA 4PJ0O 5D5DA 5EE2A 3KVDD 3NSGA 2XTQA 4PR7A 5G39A 3VE2A 1P4TA 4GHBA 4AKRA 1BH3A 1GFOA 2XE2A 2Y7SA 4N58A 5DL7A 3BS0A 2WJRA 1HXTA 2K4TA 4LSHA 2KXPA 4O3WA 3PF1A 3PGUA 3DA4A 4AFKA 1H6S1 5G3AA 2N2LA 5FVNA 3POXA 3QRAA 4KR8A 1HXUA 4FESA 6PRNA 2LHFA 3SZVA 3SZDA 2W81C 4RJXA 5KAIO 3SY7A 3A0HO 1T1LA 4FQEA 4XNKA 3SY9A 3AA1B 2R4LA 3DA3A 4O3XB 3LK2A 3AA0B 2ZLDA 4UB6O 5ADXK 4LSEA 5PRNA 3LK42 1Q9GA 4C69X 4D65A 2FGQX 4AYNA 5B66O 2XE5A 2Y0KA 2YPVA 3AA6B 4LSIA 3AAAA 2XG6A 2R4NA 4GCSA 4U9CA 4AKMA 1QJ8A 1IZNB 1BT9A 1ZHYA 2ERVA 2O4VA 4D64A 5AFUK 3HOEA 1ZHWA 3DWOX 2KZ7B 3AA1A 4FT6A 3VZWX 4FSPA 4RLCA 2X27X 4AYMC 2Y2XA 3T24A 2M06A 4E1TA 5TISO 4N59A 3AA7A 2XTRA 3PGSA 4K3CA 3C5OA 4XNLA 5G26A 3A0BO 1G90A 3UPGA 1MPFA 3PGRA 2YNKA 4PUXA 3VZUX 1GFQA 5DL6A 4C4VB 2J4UP 4C00A 1ORMA 3POUA 2F1TA 3KZIO 2XE3A 2KDYA 4FMSA 2R8AA 1E54A 2JMMA 3BRYA 5G38A 4RLBA 4AYID 3AAEB 4N75A 4G75A 3T20A 1QJ9A 2Y0HA 3QRCA 3VY8X 1THQA 3DWNA 4AUIA 4O4XA 5DL5A 2M07A 4AZLA 1PRNA 4FZMA 3AA0A 4K3BA 3V8UA 1BXWA 4FZNA 2F1VA 3SYBA 1QJPA 3O0EA 4GCQA 4E1SA 1OSMA 5ADXL 3PORA 1S5LO 2JQYA 4QQ1A 3JTYA 4UB8O 8PRNA 1ZHXA 4RL9A 4GF4A 3LK3B 1GFMA 2WVPA 3AA6A 4FZLA 3HW9A 3T0SA 3SYSA 1IZNA 5H2FO 2W80C 2ZFGA 3WI4A 4G76A 2KZ7A 5GTHO 3POQA 4O3ZA 2XMXA 4FRXA 3HOLA 2ODJA 2R4OA 4F4BA 5B5EO 5JDPA 2KC0A 3FYXA 4B61A 5E79O 3EMNX 3NJTA 4KR4A 4N74A 1T16A 3K19A 4AKRB 2MHLA 4FRTA 4O4UA 2R4PA 2N2MA 2LFUA 2KXPB 2PORA 4C4VA 1GFPA 1ZHTA 2AXTO 2PRNA 3PRNA 4D5UA 7PRNA 2XE1A 5T5FA 2MNHA 2X9KA 3LK41 4O3YA 2K0LA 3A2SX 3GP6A 3PQSA 3TZGA 3WI5A 4FSOA 4BUMX 2OMFA 5DL8A 3PQUA 3AAEA 3LK2B 3RBHA 1GFNA 3UAQA 5GTIO 1Q9FA 5KAFO 1ZHZA 2QTKA 5IYUA 2J1NA 3HWBA 2IWWA 2Y0LA 2F1CX 1MM4A 3VZTX 2R89A 4KRAA 5AFUL 3AAAB 4FUVA 4RJWA 2GE4A 4JCHA 3VY9X 4JFBA 4GCPA 3VE1A 3JCUO 4AYDC 1HXXA 2R88A
chains in the Genus database with same CATH topology
3G7GA 3LK3A 4AYEC 4LSFA 4Z3TA 5GV0A 1MM5A 3UU2A 4FOZA 2FGRA 1OPFA 1YS5A 3AA7B 4O49A 5D5DA 1PHOA 5EE2A 3KVDD 3NSGA 2XTQA 3VE2A 1P4TA 4GHBA 4AKRA 1BH3A 1GFOA 2XE2A 2Y7SA 4N58A 5DL7A 4O3WA 1HXTA 2K4TA 4LSHA 2KXPA 3DA4A 4AFKA 1H6S1 2N2LA 5FVNA 3POXA 3QRAA 4KR8A 1HXUA 4FESA 6PRNA 2LHFA 3SZVA 3SZDA 2W81C 4RJXA 3SY7A 3SY9A 4XNKA 3DA3A 4O3XB 3LK2A 3AA0B 2ZLDA 5ADXK 4LSEA 5PRNA 3LK42 1Q9GA 4C69X 4D65A 2FGQX 4AYNA 2XE5A 2Y0KA 2YPVA 3AA6B 4LSIA 3AAAA 2XG6A 4GCSA 4U9CA 4AKMA 1QJ8A 1IZNB 1BT9A 1ZHYA 2ERVA 2O4VA 4D64A 5AFUK 3HOEA 1ZHWA 2KZ7B 3AA1A 4FT6A 3VZWX 4FSPA 4RLCA 2X27X 4AYMC 2Y2XA 3T24A 2M06A 4E1TA 4N59A 3AA7A 2XTRA 3C5OA 4XNLA 5G26A 1G90A 3UPGA 1MPFA 2YNKA 4PUXA 3VZUX 1GFQA 5DL6A 2J4UP 1ORMA 3POUA 2F1TA 2XE3A 2KDYA 4FMSA 1E54A 2JMMA 4RLBA 4AYID 3AAEB 3T20A 4G75A 1QJ9A 2Y0HA 3QRCA 3VY8X 1THQA 4AUIA 4O4XA 5DL5A 2M07A 4AZLA 1PRNA 4FZMA 3AA0A 3V8UA 1BXWA 4FZNA 2F1VA 3SYBA 1QJPA 3O0EA 4GCQA 4E1SA 1OSMA 5ADXL 3PORA 5IYUA 4QQ1A 3JTYA 8PRNA 1ZHXA 4RL9A 4GF4A 3LK3B 1GFMA 3AA6A 4FZLA 3HW9A 3T0SA 3SYSA 1IZNA 2W80C 2ZFGA 3WI4A 4G76A 2KZ7A 3POQA 4O3ZA 2XMXA 4FRXA 3HOLA 2ODJA 4F4BA 5JDPA 2KC0A 3FYXA 4B61A 3EMNX 4KR4A 4AKRB 3K19A 2MHLA 4FRTA 4O4UA 2N2MA 2LFUA 2KXPB 2PORA 1GFPA 1ZHTA 2PRNA 3PRNA 4D5UA 7PRNA 2XE1A 5T5FA 2MNHA 3LK41 4O3YA 2K0LA 3A2SX 3GP6A 3PQSA 3TZGA 3WI5A 4FSOA 4BUMX 2OMFA 5DL8A 3PQUA 3AAEA 3LK2B 3RBHA 1GFNA 3UAQA 1Q9FA 1ZHZA 2QTKA 2J1NA 3HWBA 2Y0LA 5AFUL 1MM4A 3VZTX 4KRAA 3AAAB 4FUVA 4RJWA 2GE4A 4JCHA 3VY9X 4JFBA 4GCPA 3VE1A 4AYDC 1HXXA 3AA1B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4LSF A;  3UU2 A;  4FOZ A;  2FGR A;  1OPF A;  1PHO A;  3NSG A;  1BH3 A;  1GFO A;  2XE2 A;  5DL7 A;  1HXT A;  2K4T A;  4LSH A;  1H6S 1;  5FVN A;  3POX A;  4KR8 A;  1HXU A;  6PRN A;  3SZV A;  3SZD A;  4RJX A;  3SY7 A;  3SY9 A;  2ZLD A;  4LSE A;  5PRN A;  4C69 X;  4D65 A;  2FGQ X;  2XE5 A;  2Y0K A;  4LSI A;  2XG6 A;  4GCS A;  2O4V A;  8PRN A;  1BT9 A;  4D64 A;  3VZW X;  4FT6 A;  4FSP A;  2Y2X A;  3T24 A;  1MPF A;  3VZU X;  1GFQ A;  5DL6 A;  2J4U P;  3POU A;  2XE3 A;  4FMS A;  1E54 A;  3T20 A;  2Y0H A;  3VY8 X;  4AUI A;  5DL5 A;  1PRN A;  3UPG A;  3SYB A;  4GCQ A;  3O0E A;  1OSM A;  3POR A;  3JTY A;  1GFM A;  3HW9 A;  3T0S A;  3SYS A;  2ZFG A;  3WI4 A;  3POQ A;  5JDP A;  4FRX A;  2ODJ A;  3FYX A;  3EMN X;  4KR4 A;  3K19 A;  4FRT A;  2POR A;  1GFP A;  2PRN A;  3PRN A;  4D5U A;  7PRN A;  2XE1 A;  3WI5 A;  3A2S X;  4BUM X;  4FSO A;  2OMF A;  5DL8 A;  1GFN A;  2QTK A;  2J1N A;  3HWB A;  2Y0L A;  3VZT X;  4KRA A;  4RJW A;  3VY9 X;  4JFB A;  4GCP A;  1HXX A; 
#chains in the Genus database with same CATH topology
 3G7G A;  3LK3 A;  4AYE C;  2IWV A;  4LSF A;  3WU2 O;  4Z3T A;  4CTD A;  5GV0 A;  1MM5 A;  3UU2 A;  3BRZ A;  2FGR A;  4FOZ A;  1OPF A;  1YS5 A;  2WJQ A;  3AA7 B;  3DZM A;  4O49 A;  4IL6 O;  1PHO A;  4PJ0 O;  5D5D A;  5EE2 A;  3KVD D;  3NSG A;  2XTQ A;  4PR7 A;  5G39 A;  3VE2 A;  1P4T A;  4GHB A;  4AKR A;  1BH3 A;  1GFO A;  2XE2 A;  2Y7S A;  4N58 A;  5DL7 A;  3BS0 A;  2WJR A;  1HXT A;  2K4T A;  4LSH A;  2KXP A;  4O3W A;  3PF1 A;  3PGU A;  3DA4 A;  4AFK A;  1H6S 1;  5G3A A;  2N2L A;  5FVN A;  3POX A;  3QRA A;  4KR8 A;  1HXU A;  4FES A;  6PRN A;  2LHF A;  3SZV A;  3SZD A;  2W81 C;  4RJX A;  5KAI O;  3SY7 A;  3A0H O;  1T1L A;  4FQE A;  4XNK A;  3SY9 A;  3AA1 B;  2R4L A;  3DA3 A;  4O3X B;  3LK2 A;  3AA0 B;  2ZLD A;  4UB6 O;  5ADX K;  4LSE A;  5PRN A;  3LK4 2;  1Q9G A;  4C69 X;  4D65 A;  2FGQ X;  4AYN A;  5B66 O;  2XE5 A;  2Y0K A;  2YPV A;  3AA6 B;  4LSI A;  3AAA A;  2XG6 A;  2R4N A;  4GCS A;  4U9C A;  4AKM A;  1QJ8 A;  1IZN B;  1BT9 A;  1ZHY A;  2ERV A;  2O4V A;  4D64 A;  5AFU K;  3HOE A;  1ZHW A;  3DWO X;  2KZ7 B;  3AA1 A;  4FT6 A;  3VZW X;  4FSP A;  4RLC A;  2X27 X;  4AYM C;  2Y2X A;  3T24 A;  2M06 A;  4E1T A;  5TIS O;  4N59 A;  3AA7 A;  2XTR A;  3PGS A;  4K3C A;  3C5O A;  4XNL A;  5G26 A;  3A0B O;  1G90 A;  3UPG A;  1MPF A;  3PGR A;  2YNK A;  4PUX A;  3VZU X;  1GFQ A;  5DL6 A;  4C4V B;  2J4U P;  4C00 A;  1ORM A;  3POU A;  2F1T A;  3KZI O;  2XE3 A;  2KDY A;  4FMS A;  2R8A A;  1E54 A;  2JMM A;  3BRY A;  5G38 A;  4RLB A;  4AYI D;  3AAE B;  4N75 A;  4G75 A;  3T20 A;  1QJ9 A;  2Y0H A;  3QRC A;  3VY8 X;  1THQ A;  3DWN A;  4AUI A;  4O4X A;  5DL5 A;  2M07 A;  4AZL A;  1PRN A;  4FZM A;  3AA0 A;  4K3B A;  3V8U A;  1BXW A;  4FZN A;  2F1V A;  3SYB A;  1QJP A;  3O0E A;  4GCQ A;  4E1S A;  1OSM A;  5ADX L;  3POR A;  1S5L O;  2JQY A;  4QQ1 A;  3JTY A;  4UB8 O;  8PRN A;  1ZHX A;  4RL9 A;  4GF4 A;  3LK3 B;  1GFM A;  2WVP A;  3AA6 A;  4FZL A;  3HW9 A;  3T0S A;  3SYS A;  1IZN A;  5H2F O;  2W80 C;  2ZFG A;  3WI4 A;  4G76 A;  2KZ7 A;  5GTH O;  3POQ A;  4O3Z A;  2XMX A;  4FRX A;  3HOL A;  2ODJ A;  2R4O A;  4F4B A;  5B5E O;  5JDP A;  2KC0 A;  3FYX A;  4B61 A;  5E79 O;  3EMN X;  3NJT A;  4KR4 A;  4N74 A;  1T16 A;  3K19 A;  4AKR B;  2MHL A;  4FRT A;  4O4U A;  2R4P A;  2N2M A;  2LFU A;  2KXP B;  2POR A;  4C4V A;  1GFP A;  1ZHT A;  2AXT O;  2PRN A;  3PRN A;  4D5U A;  7PRN A;  2XE1 A;  5T5F A;  2MNH A;  2X9K A;  3LK4 1;  4O3Y A;  2K0L A;  3A2S X;  3GP6 A;  3PQS A;  3TZG A;  3WI5 A;  4FSO A;  4BUM X;  2OMF A;  5DL8 A;  3PQU A;  3AAE A;  3LK2 B;  3RBH A;  1GFN A;  3UAQ A;  5GTI O;  1Q9F A;  5KAF O;  1ZHZ A;  2QTK A;  5IYU A;  2J1N A;  3HWB A;  2IWW A;  2Y0L A;  2F1C X;  1MM4 A;  3VZT X;  2R89 A;  4KRA A;  5AFU L;  3AAA B;  4FUV A;  4RJW A;  2GE4 A;  4JCH A;  3VY9 X;  4JFB A;  4GCP A;  3VE1 A;  3JCU O;  4AYD C;  1HXX A;  2R88 A; 
#chains in the Genus database with same CATH homology
 3G7G A;  3LK3 A;  4AYE C;  4LSF A;  4Z3T A;  5GV0 A;  1MM5 A;  3UU2 A;  4FOZ A;  2FGR A;  1OPF A;  1YS5 A;  3AA7 B;  4O49 A;  5D5D A;  1PHO A;  5EE2 A;  3KVD D;  3NSG A;  2XTQ A;  3VE2 A;  1P4T A;  4GHB A;  4AKR A;  1BH3 A;  1GFO A;  2XE2 A;  2Y7S A;  4N58 A;  5DL7 A;  4O3W A;  1HXT A;  2K4T A;  4LSH A;  2KXP A;  3DA4 A;  4AFK A;  1H6S 1;  2N2L A;  5FVN A;  3POX A;  3QRA A;  4KR8 A;  1HXU A;  4FES A;  6PRN A;  2LHF A;  3SZV A;  3SZD A;  2W81 C;  4RJX A;  3SY7 A;  3SY9 A;  4XNK A;  3DA3 A;  4O3X B;  3LK2 A;  3AA0 B;  2ZLD A;  5ADX K;  4LSE A;  5PRN A;  3LK4 2;  1Q9G A;  4C69 X;  4D65 A;  2FGQ X;  4AYN A;  2XE5 A;  2Y0K A;  2YPV A;  3AA6 B;  4LSI A;  3AAA A;  2XG6 A;  4GCS A;  4U9C A;  4AKM A;  1QJ8 A;  1IZN B;  1BT9 A;  1ZHY A;  2ERV A;  2O4V A;  4D64 A;  5AFU K;  3HOE A;  1ZHW A;  2KZ7 B;  3AA1 A;  4FT6 A;  3VZW X;  4FSP A;  4RLC A;  2X27 X;  4AYM C;  2Y2X A;  3T24 A;  2M06 A;  4E1T A;  4N59 A;  3AA7 A;  2XTR A;  3C5O A;  4XNL A;  5G26 A;  1G90 A;  3UPG A;  1MPF A;  2YNK A;  4PUX A;  3VZU X;  1GFQ A;  5DL6 A;  2J4U P;  1ORM A;  3POU A;  2F1T A;  2XE3 A;  2KDY A;  4FMS A;  1E54 A;  2JMM A;  4RLB A;  4AYI D;  3AAE B;  3T20 A;  4G75 A;  1QJ9 A;  2Y0H A;  3QRC A;  3VY8 X;  1THQ A;  4AUI A;  4O4X A;  5DL5 A;  2M07 A;  4AZL A;  1PRN A;  4FZM A;  3AA0 A;  3V8U A;  1BXW A;  4FZN A;  2F1V A;  3SYB A;  1QJP A;  3O0E A;  4GCQ A;  4E1S A;  1OSM A;  5ADX L;  3POR A;  5IYU A;  4QQ1 A;  3JTY A;  8PRN A;  1ZHX A;  4RL9 A;  4GF4 A;  3LK3 B;  1GFM A;  3AA6 A;  4FZL A;  3HW9 A;  3T0S A;  3SYS A;  1IZN A;  2W80 C;  2ZFG A;  3WI4 A;  4G76 A;  2KZ7 A;  3POQ A;  4O3Z A;  2XMX A;  4FRX A;  3HOL A;  2ODJ A;  4F4B A;  5JDP A;  2KC0 A;  3FYX A;  4B61 A;  3EMN X;  4KR4 A;  4AKR B;  3K19 A;  2MHL A;  4FRT A;  4O4U A;  2N2M A;  2LFU A;  2KXP B;  2POR A;  1GFP A;  1ZHT A;  2PRN A;  3PRN A;  4D5U A;  7PRN A;  2XE1 A;  5T5F A;  2MNH A;  3LK4 1;  4O3Y A;  2K0L A;  3A2S X;  3GP6 A;  3PQS A;  3TZG A;  3WI5 A;  4FSO A;  4BUM X;  2OMF A;  5DL8 A;  3PQU A;  3AAE A;  3LK2 B;  3RBH A;  1GFN A;  3UAQ A;  1Q9F A;  1ZHZ A;  2QTK A;  2J1N A;  3HWB A;  2Y0L A;  5AFU L;  1MM4 A;  3VZT X;  4KRA A;  3AAA B;  4FUV A;  4RJW A;  2GE4 A;  4JCH A;  3VY9 X;  4JFB A;  4GCP A;  3VE1 A;  4AYD C;  1HXX A;  3AA1 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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