3SZVA

Crystal structure of pseudomonas aeruginosa occk3 (opdo)
Total Genus 104
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
393
structure length
364
Chain Sequence
ENLYFQGLEDLVEDSHASLELRNFYFNRDFRDEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRLILSYSLALW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
molecule keywords Pyroglutatmate porin OpdO
total genus 104
structure length 364
sequence length 393
ec nomenclature
pdb deposition date 2011-07-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3szvA01
4AUIA 3O0EA 3T20A 1MPFA 4FSOA 2XE2A 4KR4A 3PORA 2FGRA 3SYSA 4GCQA 1HXTA 5PRNA 4RJWA 3VZTX 3SY7A 3SZVA 2ZLDA 2PRNA 4RJXA 4LSHA 3SZDA 3NSGA 4FSPA 3POQA 2FGQX 3FYXA 2PORA 4FRXA 7PRNA 2K4TA 8PRNA 2XE3A 1OSMA 3UPGA 4FMSA 4FOZA 2Y0HA 3POUA 5FVNA 2J4UP 1BT9A 1GFNA 5DL8A 4GCSA 4LSEA 3VY9X 4JFBA 4GCPA 3PRNA 2XE1A 3POXA 3VZUX 4FT6A 4LSFA 3T24A 1GFQA 4FRTA 2OMFA 5DL6A 2XG6A 4KR8A 1HXUA 3A2SX 3HW9A 1GFMA 5DL5A 3SY9A 3UU2A 3K19A 3VZWX 2Y0LA 1GFOA 6PRNA 3VY8X 4D65A 4KRAA 1BH3A 4C69X 2O4VA 2J1NA 2Y0KA 1GFPA 4BUMX 1PRNA 3WI4A 3T0SA 2XE5A 2QTKA 4D5UA 2ZFGA 2ODJA 3SYBA 1H6S1 5JDPA 3HWBA 3EMNX 1OPFA 1HXXA 3JTYA 4D64A 4LSIA 3WI5A 2Y2XA 1PHOA 5DL7A 1E54A
chains in the Genus database with same CATH superfamily
2K0LA 4AUIA 2R88A 3O0EA 3DWNA 4O3XB 3WU2O 3LK3A 3BRYA 3T20A 1MPFA 5KAFO 4FSOA 2XE2A 4FUVA 4KR4A 2IWWA 4FZNA 3PORA 4AKRA 2N2MA 2FGRA 2XMXA 2WJQA 4FESA 1ZHYA 2MNHA 3SYSA 4GCQA 4PR7A 2KDYA 5H2FO 4AZLA 2MHLA 1HXTA 1T16A 4UB8O 5PRNA 4AYNA 4C4VA 4RJWA 3VZTX 3SY7A 4PJ0O 2ZLDA 3SZVA 5GV0A 4AKMA 3G7GA 2PRNA 4RJXA 4LSHA 3AAEB 4U9CA 3SZDA 2WJRA 3NSGA 4FSPA 3POQA 4N58A 3VE2A 4RL9A 3AAEA 4FQEA 3RBHA 3AA0A 2LHFA 4O3YA 2FGQX 2JQYA 3FYXA 5G38A 1S5LO 4FZMA 2R8AA 3KVDD 3AA6A 5E79O 2PORA 3AA1A 2X27X 2M07A 4RLBA 1ZHTA 4FRXA 1ZHXA 3AA6B 5AFUK 5ADXK 7PRNA 5GTHO 2K4TA 2WVPA 5DL7A 3HOLA 3PGSA 2N2LA 8PRNA 2XE3A 1QJ9A 4O4UA 2R4NA 2W81C 3GP6A 1OSMA 4O4XA 3UPGA 2KXPA 4AYID 3HOEA 1ZHZA 4G75A 5TISO 2KZ7A 3C5OA 4E1SA 4FMSA 5DL5A 2KC0A 4FOZA 2R4LA 1Q9GA 2Y0HA 3PQUA 1YS5A 3POUA 1QJPA 3BS0A 3PF1A 5FVNA 2J4UP 1BT9A 4RLCA 1GFNA 3SY9A 3UAQA 4O3ZA 5DL8A 3AA7B 4GCSA 5G39A 2JMMA 2Y7SA 3PQSA 4LSEA 4UB6O 4XNKA 4C4VB 3VY9X 2M06A 4N74A 5B66O 3PGUA 5T5FA 1IZNA 5IYUA 4O3WA 2KZ7B 2F1VA 4GCPA 1MM4A 1MM5A 4JFBA 5KAIO 4AYEC 4E1TA 3PRNA 2XE1A 3AAAB 3LK2A 5G3AA 4C00A 3POXA 4N59A 4FT6A 4LSFA 3VZUX 3DA3A 4AFKA 3AAAA 3LK2B 4AYDC 3T24A 1GFQA 4FRTA 4AKRB 2OMFA 5DL6A 2R4PA 1ORMA 2XG6A 1HXUA 3A2SX 3DWOX 1GFMA 3HW9A 3JCUO 3DA4A 3K19A 3LK41 3UU2A 3VE1A 3A0BO 1THQA 1G90A 4GHBA 2Y0LA 4B61A 5ADXL 1GFOA 6PRNA 3AA0B 3VY8X 4N75A 2YPVA 4KR8A 2KXPB 3AA7A 5B5EO 3NJTA 3LK42 1ZHWA 4PUXA 2IWVA 4D65A 4G76A 2XTRA 1BH3A 1T1LA 2X9KA 4KRAA 5GTIO 1P4TA 3A0HO 4C69X 5AFUL 5D5DA 2GE4A 4K3CA 2AXTO 2O4VA 2J1NA 2Y0KA 1GFPA 2YNKA 1PRNA 3AA1B 4BUMX 3WI4A 4CTDA 3BRZA 3T0SA 2W80C 2F1TA 2XE5A 3TZGA 3DZMA 4AYMC 4D5UA 2ZFGA 2ODJA 1QJ8A 2F1CX 2XTQA 3SYBA 1IZNB 1H6S1 3LK3B 3QRCA 1Q9FA 2ERVA 3VZWX 5JDPA 3HWBA 3KZIO 4F4BA 3PGRA 2R89A 3EMNX 1OPFA 3V8UA 4JCHA 1HXXA 3QRAA 4XNLA 4QQ1A 4O49A 4K3BA 3JTYA 4D64A 4LSIA 5EE2A 2LFUA 4FZLA 2R4OA 5G26A 3WI5A 4Z3TA 2Y2XA 1BXWA 1PHOA 2QTKA 4IL6O 1E54A 4GF4A
chains in the Genus database with same CATH topology
2K0LA 4AUIA 3O0EA 4O3XB 3LK3A 3T20A 1MPFA 4FSOA 2XE2A 4FUVA 4KR4A 4FZNA 3PORA 4AKRA 2N2MA 2FGRA 2XMXA 4FESA 1ZHYA 2MNHA 3SYSA 4GCQA 2KDYA 4AZLA 2MHLA 1HXTA 5PRNA 4AYNA 5ADXL 4RJWA 3VZTX 3SY7A 3SZVA 2ZLDA 5GV0A 4AKMA 3G7GA 2PRNA 4RJXA 4LSHA 3AAEB 4U9CA 3SZDA 3NSGA 4FSPA 3POQA 4N58A 3VE2A 4RL9A 3AAEA 3RBHA 3AA0A 2LHFA 4O3YA 2FGQX 3FYXA 4FZMA 3KVDD 3AA6A 2PORA 3AA1A 2X27X 2M07A 5AFUK 1ZHTA 4FRXA 1ZHXA 3AA6B 5ADXK 7PRNA 2K4TA 5DL7A 3HOLA 2N2LA 8PRNA 2XE3A 1QJ9A 4O4UA 2W81C 3GP6A 1OSMA 4O4XA 3UPGA 2KXPA 4AYID 3HOEA 1ZHZA 4G75A 2KZ7A 3C5OA 4E1SA 4FMSA 2KC0A 4FOZA 1Q9GA 2Y0HA 3PQUA 1YS5A 3POUA 1QJPA 5FVNA 2J4UP 1BT9A 4RLCA 1GFNA 3SY9A 3UAQA 4O3ZA 5DL8A 3AA7B 4GCSA 2JMMA 2Y7SA 3PQSA 4LSEA 4XNKA 3VY9X 2M06A 5T5FA 1IZNA 5IYUA 4O3WA 2KZ7B 2F1VA 4GCPA 1MM4A 1MM5A 4JFBA 4E1TA 4AYEC 3PRNA 2XE1A 3AAAB 3LK2A 3POXA 4N59A 4FT6A 4LSFA 3VZUX 3DA3A 4AFKA 3AAAA 3LK2B 4AYDC 3T24A 1GFQA 4FRTA 4AKRB 2OMFA 5DL6A 1ORMA 2XG6A 1HXUA 3A2SX 3HW9A 1GFMA 4KR8A 5DL5A 3DA4A 3K19A 3LK41 3UU2A 3VE1A 1THQA 1G90A 4GHBA 2Y0LA 4B61A 1GFOA 6PRNA 3AA0B 3VY8X 2YPVA 2KXPB 3AA7A 3LK42 1ZHWA 4PUXA 4D65A 4G76A 2XTRA 1BH3A 4KRAA 5AFUL 4C69X 1P4TA 5D5DA 2GE4A 2O4VA 2J1NA 2Y0KA 1GFPA 2YNKA 1PRNA 3AA1B 4BUMX 3WI4A 3T0SA 2W80C 2F1TA 2XE5A 3TZGA 4AYMC 4D5UA 2ZFGA 2XTQA 2ODJA 1QJ8A 3SYBA 1IZNB 1H6S1 3LK3B 3QRCA 1Q9FA 2ERVA 3VZWX 5JDPA 3HWBA 4F4BA 3EMNX 1OPFA 3V8UA 4JCHA 1HXXA 3QRAA 4XNLA 4QQ1A 4O49A 3JTYA 4D64A 4LSIA 5EE2A 2LFUA 4FZLA 5G26A 3WI5A 4Z3TA 2Y2XA 1BXWA 1PHOA 2QTKA 4RLBA 1E54A 4GF4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4AUI A;  3O0E A;  3T20 A;  1MPF A;  4FSO A;  2XE2 A;  4KR4 A;  3POR A;  2FGR A;  3SYS A;  4GCQ A;  1HXT A;  5PRN A;  4RJW A;  3VZT X;  3SY7 A;  3SZV A;  2ZLD A;  2PRN A;  4RJX A;  4LSH A;  3SZD A;  3NSG A;  4FSP A;  3POQ A;  2FGQ X;  3FYX A;  2POR A;  4FRX A;  7PRN A;  2K4T A;  8PRN A;  2XE3 A;  1OSM A;  3UPG A;  4FMS A;  4FOZ A;  2Y0H A;  3POU A;  5FVN A;  2J4U P;  1BT9 A;  1GFN A;  5DL8 A;  4GCS A;  4LSE A;  3VY9 X;  4JFB A;  4GCP A;  3PRN A;  2XE1 A;  3POX A;  3VZU X;  4FT6 A;  4LSF A;  3T24 A;  1GFQ A;  4FRT A;  2OMF A;  5DL6 A;  2XG6 A;  4KR8 A;  1HXU A;  3A2S X;  3HW9 A;  1GFM A;  5DL5 A;  3SY9 A;  3UU2 A;  3K19 A;  3VZW X;  2Y0L A;  1GFO A;  6PRN A;  3VY8 X;  4D65 A;  4KRA A;  1BH3 A;  4C69 X;  2O4V A;  2J1N A;  2Y0K A;  1GFP A;  4BUM X;  1PRN A;  3WI4 A;  3T0S A;  2XE5 A;  2QTK A;  4D5U A;  2ZFG A;  2ODJ A;  3SYB A;  1H6S 1;  5JDP A;  3HWB A;  3EMN X;  1OPF A;  1HXX A;  3JTY A;  4D64 A;  4LSI A;  3WI5 A;  2Y2X A;  1PHO A;  5DL7 A;  1E54 A; 
#chains in the Genus database with same CATH topology
 2K0L A;  4AUI A;  2R88 A;  3O0E A;  3DWN A;  4O3X B;  3WU2 O;  3LK3 A;  3BRY A;  3T20 A;  1MPF A;  5KAF O;  4FSO A;  2XE2 A;  4FUV A;  4KR4 A;  2IWW A;  4FZN A;  3POR A;  4AKR A;  2N2M A;  2FGR A;  2XMX A;  2WJQ A;  4FES A;  1ZHY A;  2MNH A;  3SYS A;  4GCQ A;  4PR7 A;  2KDY A;  5H2F O;  4AZL A;  2MHL A;  1HXT A;  1T16 A;  4UB8 O;  5PRN A;  4AYN A;  4C4V A;  4RJW A;  3VZT X;  3SY7 A;  4PJ0 O;  2ZLD A;  3SZV A;  5GV0 A;  4AKM A;  3G7G A;  2PRN A;  4RJX A;  4LSH A;  3AAE B;  4U9C A;  3SZD A;  2WJR A;  3NSG A;  4FSP A;  3POQ A;  4N58 A;  3VE2 A;  4RL9 A;  3AAE A;  4FQE A;  3RBH A;  3AA0 A;  2LHF A;  4O3Y A;  2FGQ X;  2JQY A;  3FYX A;  5G38 A;  1S5L O;  4FZM A;  2R8A A;  3KVD D;  3AA6 A;  5E79 O;  2POR A;  3AA1 A;  2X27 X;  2M07 A;  4RLB A;  1ZHT A;  4FRX A;  1ZHX A;  3AA6 B;  5AFU K;  5ADX K;  7PRN A;  5GTH O;  2K4T A;  2WVP A;  5DL7 A;  3HOL A;  3PGS A;  2N2L A;  8PRN A;  2XE3 A;  1QJ9 A;  4O4U A;  2R4N A;  2W81 C;  3GP6 A;  1OSM A;  4O4X A;  3UPG A;  2KXP A;  4AYI D;  3HOE A;  1ZHZ A;  4G75 A;  5TIS O;  2KZ7 A;  3C5O A;  4E1S A;  4FMS A;  5DL5 A;  2KC0 A;  4FOZ A;  2R4L A;  1Q9G A;  2Y0H A;  3PQU A;  1YS5 A;  3POU A;  1QJP A;  3BS0 A;  3PF1 A;  5FVN A;  2J4U P;  1BT9 A;  4RLC A;  1GFN A;  3SY9 A;  3UAQ A;  4O3Z A;  5DL8 A;  3AA7 B;  4GCS A;  5G39 A;  2JMM A;  2Y7S A;  3PQS A;  4LSE A;  4UB6 O;  4XNK A;  4C4V B;  3VY9 X;  2M06 A;  4N74 A;  5B66 O;  3PGU A;  5T5F A;  1IZN A;  5IYU A;  4O3W A;  2KZ7 B;  2F1V A;  4GCP A;  1MM4 A;  1MM5 A;  4JFB A;  5KAI O;  4AYE C;  4E1T A;  3PRN A;  2XE1 A;  3AAA B;  3LK2 A;  5G3A A;  4C00 A;  3POX A;  4N59 A;  4FT6 A;  4LSF A;  3VZU X;  3DA3 A;  4AFK A;  3AAA A;  3LK2 B;  4AYD C;  3T24 A;  1GFQ A;  4FRT A;  4AKR B;  2OMF A;  5DL6 A;  2R4P A;  1ORM A;  2XG6 A;  1HXU A;  3A2S X;  3DWO X;  1GFM A;  3HW9 A;  3JCU O;  3DA4 A;  3K19 A;  3LK4 1;  3UU2 A;  3VE1 A;  3A0B O;  1THQ A;  1G90 A;  4GHB A;  2Y0L A;  4B61 A;  5ADX L;  1GFO A;  6PRN A;  3AA0 B;  3VY8 X;  4N75 A;  2YPV A;  4KR8 A;  2KXP B;  3AA7 A;  5B5E O;  3NJT A;  3LK4 2;  1ZHW A;  4PUX A;  2IWV A;  4D65 A;  4G76 A;  2XTR A;  1BH3 A;  1T1L A;  2X9K A;  4KRA A;  5GTI O;  1P4T A;  3A0H O;  4C69 X;  5AFU L;  5D5D A;  2GE4 A;  4K3C A;  2AXT O;  2O4V A;  2J1N A;  2Y0K A;  1GFP A;  2YNK A;  1PRN A;  3AA1 B;  4BUM X;  3WI4 A;  4CTD A;  3BRZ A;  3T0S A;  2W80 C;  2F1T A;  2XE5 A;  3TZG A;  3DZM A;  4AYM C;  4D5U A;  2ZFG A;  2ODJ A;  1QJ8 A;  2F1C X;  2XTQ A;  3SYB A;  1IZN B;  1H6S 1;  3LK3 B;  3QRC A;  1Q9F A;  2ERV A;  3VZW X;  5JDP A;  3HWB A;  3KZI O;  4F4B A;  3PGR A;  2R89 A;  3EMN X;  1OPF A;  3V8U A;  4JCH A;  1HXX A;  3QRA A;  4XNL A;  4QQ1 A;  4O49 A;  4K3B A;  3JTY A;  4D64 A;  4LSI A;  5EE2 A;  2LFU A;  4FZL A;  2R4O A;  5G26 A;  3WI5 A;  4Z3T A;  2Y2X A;  1BXW A;  1PHO A;  2QTK A;  4IL6 O;  1E54 A;  4GF4 A; 
#chains in the Genus database with same CATH homology
 2K0L A;  4AUI A;  3O0E A;  4O3X B;  3LK3 A;  3T20 A;  1MPF A;  4FSO A;  2XE2 A;  4FUV A;  4KR4 A;  4FZN A;  3POR A;  4AKR A;  2N2M A;  2FGR A;  2XMX A;  4FES A;  1ZHY A;  2MNH A;  3SYS A;  4GCQ A;  2KDY A;  4AZL A;  2MHL A;  1HXT A;  5PRN A;  4AYN A;  5ADX L;  4RJW A;  3VZT X;  3SY7 A;  3SZV A;  2ZLD A;  5GV0 A;  4AKM A;  3G7G A;  2PRN A;  4RJX A;  4LSH A;  3AAE B;  4U9C A;  3SZD A;  3NSG A;  4FSP A;  3POQ A;  4N58 A;  3VE2 A;  4RL9 A;  3AAE A;  3RBH A;  3AA0 A;  2LHF A;  4O3Y A;  2FGQ X;  3FYX A;  4FZM A;  3KVD D;  3AA6 A;  2POR A;  3AA1 A;  2X27 X;  2M07 A;  5AFU K;  1ZHT A;  4FRX A;  1ZHX A;  3AA6 B;  5ADX K;  7PRN A;  2K4T A;  5DL7 A;  3HOL A;  2N2L A;  8PRN A;  2XE3 A;  1QJ9 A;  4O4U A;  2W81 C;  3GP6 A;  1OSM A;  4O4X A;  3UPG A;  2KXP A;  4AYI D;  3HOE A;  1ZHZ A;  4G75 A;  2KZ7 A;  3C5O A;  4E1S A;  4FMS A;  2KC0 A;  4FOZ A;  1Q9G A;  2Y0H A;  3PQU A;  1YS5 A;  3POU A;  1QJP A;  5FVN A;  2J4U P;  1BT9 A;  4RLC A;  1GFN A;  3SY9 A;  3UAQ A;  4O3Z A;  5DL8 A;  3AA7 B;  4GCS A;  2JMM A;  2Y7S A;  3PQS A;  4LSE A;  4XNK A;  3VY9 X;  2M06 A;  5T5F A;  1IZN A;  5IYU A;  4O3W A;  2KZ7 B;  2F1V A;  4GCP A;  1MM4 A;  1MM5 A;  4JFB A;  4E1T A;  4AYE C;  3PRN A;  2XE1 A;  3AAA B;  3LK2 A;  3POX A;  4N59 A;  4FT6 A;  4LSF A;  3VZU X;  3DA3 A;  4AFK A;  3AAA A;  3LK2 B;  4AYD C;  3T24 A;  1GFQ A;  4FRT A;  4AKR B;  2OMF A;  5DL6 A;  1ORM A;  2XG6 A;  1HXU A;  3A2S X;  3HW9 A;  1GFM A;  4KR8 A;  5DL5 A;  3DA4 A;  3K19 A;  3LK4 1;  3UU2 A;  3VE1 A;  1THQ A;  1G90 A;  4GHB A;  2Y0L A;  4B61 A;  1GFO A;  6PRN A;  3AA0 B;  3VY8 X;  2YPV A;  2KXP B;  3AA7 A;  3LK4 2;  1ZHW A;  4PUX A;  4D65 A;  4G76 A;  2XTR A;  1BH3 A;  4KRA A;  5AFU L;  4C69 X;  1P4T A;  5D5D A;  2GE4 A;  2O4V A;  2J1N A;  2Y0K A;  1GFP A;  2YNK A;  1PRN A;  3AA1 B;  4BUM X;  3WI4 A;  3T0S A;  2W80 C;  2F1T A;  2XE5 A;  3TZG A;  4AYM C;  4D5U A;  2ZFG A;  2XTQ A;  2ODJ A;  1QJ8 A;  3SYB A;  1IZN B;  1H6S 1;  3LK3 B;  3QRC A;  1Q9F A;  2ERV A;  3VZW X;  5JDP A;  3HWB A;  4F4B A;  3EMN X;  1OPF A;  3V8U A;  4JCH A;  1HXX A;  3QRA A;  4XNL A;  4QQ1 A;  4O49 A;  3JTY A;  4D64 A;  4LSI A;  5EE2 A;  2LFU A;  4FZL A;  5G26 A;  3WI5 A;  4Z3T A;  2Y2X A;  1BXW A;  1PHO A;  2QTK A;  4RLB A;  1E54 A;  4GF4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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