3SZVA

Crystal structure of pseudomonas aeruginosa occk3 (opdo)
Total Genus 104
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
104
sequence length
393
structure length
364
Chain Sequence
ENLYFQGLEDLVEDSHASLELRNFYFNRDFRDEWAQGFLLRLESGFSEGTVGFGVDAIGLLGFKLDSQDDYAKLGLTAKARVSNSLLKVGALHFKSPLVSANDTRLLPELFRGALLDVQEIDGLTLRGAHLDRNKLNSSSDYQVFSANRIGGRSDAFDFAGGDYRLTPALTASLHQGRLKDIYRQTFAGLVHTLDLGRSLKSDLRFARASEDGGFRELDNRAFGALFSLRLGAHAVAAGYQRISGDDPYPYIAGSDPYLVNFIQIGDFGNVDERSWQLRYDYDFGALGLPGLSFMSRYVSGDNVARGAANDGKEWERNTDLGYVVQSGPLKNLGVKWRNATVRSNFANDLDENRLILSYSLALW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
molecule keywords Pyroglutatmate porin OpdO
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
total genus 104
structure length 364
sequence length 393
ec nomenclature
pdb deposition date 2011-07-19
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3szvA01
6PRNA 3O0EA 1E54A 4GCSA 8PRNA 2J4UP 3PRNA 3VZUX 3HWBA 3VY9X 3VZWX 3SZDA 1HXUA 3NSGA 4LSFA 3A2SX 3VZTX 3POXA 1BT9A 5DL5A 4JFBA 4FRXA 2O4VA 1OPFA 2K4TA 2J1NA 4FT6A 4KRAA 2Y0HA 1BH3A 1HXTA 4RJWA 3VY8X 3SYBA 5DL7A 4KR8A 3UU2A 3POUA 2ZLDA 3SYSA 2XE3A 1HXXA 2XE1A 3POQA 4D64A 3JTYA 4AUIA 3WI5A 3K19A 1H6S1 1GFPA 2ZFGA 2XE2A 4GCQA 3T24A 5DL6A 2FGQX 2ODJA 4FMSA 2PORA 1GFOA 3T20A 2XG6A 4FSOA 1PHOA 1GFMA 3EMNX 3SY7A 3SZVA 3T0SA 4FOZA 4LSEA 4LSHA 3FYXA 4RJXA 7PRNA 4FRTA 4GCPA 2Y0KA 2FGRA 3HW9A 4KR4A 3WI4A 2OMFA 5JDPA 5PRNA 1OSMA 3UPGA 4C69X 4FSPA 2PRNA 1PRNA 4LSIA 3SY9A 1MPFA 1GFQA 5FVNA 4BUMX 2QTKA 2Y2XA 3PORA 2XE5A 5DL8A 4D65A 4D5UA 1GFNA 2Y0LA
chains in the Genus database with same CATH superfamily
5B5EO 2KZ7B 6PRNA 3O0EA 1E54A 1T1LA 2MNHA 2XMXA 2W81C 3HOLA 4GCSA 2R89A 8PRNA 3PRNA 3DWOX 5H2FO 4G75A 2X27X 2J4UP 5GTHO 3VZUX 1ZHWA 3HWBA 3VY9X 3WI4A 2WJRA 3AA6B 3BRZA 4Z3TA 4PUXA 3VZWX 3SZDA 4O3ZA 1HXUA 3NSGA 3PGRA 5G38A 3AA6A 4LSFA 3A2SX 4QQ1A 3AA7B 3VZTX 1G90A 4FESA 3POXA 2XTRA 3AA1A 1BT9A 4FUVA 4N74A 4FZLA 3AA7A 5DL5A 5B66O 5ADXL 4JFBA 2R4NA 3DA4A 4FRXA 4O3YA 4GF4A 2O4VA 4UB6O 2K4TA 1MM4A 1OPFA 1YS5A 2J1NA 3AA0B 3DA3A 4FT6A 4KRAA 3TZGA 2Y0HA 4AZLA 2X9KA 5G26A 1BH3A 4UB8O 3AA0A 1THQA 3KZIO 3QRCA 1HXTA 1QJ8A 4RJWA 3C5OA 3VY8X 1S5LO 1ORMA 2N2MA 5DL7A 3SYBA 4AYDC 1BXWA 2KDYA 2LHFA 4KR8A 2MHLA 4AKMA 4F4BA 4RLBA 3JCUO 2JQYA 3UU2A 3WU2O 3POUA 2ZLDA 3SYSA 4U9CA 2KC0A 1QJ9A 1HXXA 2XE1A 2XE3A 3DWNA 3POQA 4D64A 1ZHYA 3JTYA 4AUIA 3AA1B 3BS0A 3WI5A 3K19A 3LK41 4AYEC 1H6S1 3PGUA 1GFPA 2YPVA 2ZFGA 2XE2A 2WJQA 4PR7A 4N75A 2R4LA 2ERVA 1IZNB 4GCQA 4N59A 1ZHTA 2Y7SA 3HOEA 5KAIO 2AXTO 5T5FA 4IL6O 3PGSA 5DL6A 3AAAB 3T24A 2FGQX 2ODJA 4GHBA 2PORA 1IZNA 4FMSA 4AYID 2R88A 4RL9A 4AFKA 3V8UA 1GFOA 3KVDD 1T16A 3PF1A 3AAAA 3T20A 2XG6A 4FSOA 4N58A 2M06A 3VE1A 5D5DA 5G3AA 2R4PA 2M07A 1PHOA 4CTDA 5AFUL 5IYUA 3RBHA 4XNLA 1GFMA 3EMNX 2F1VA 3SY7A 1MM5A 3SZVA 3T0SA 5AFUK 2YNKA 4FOZA 4O4UA 4C4VB 4AKRB 4FZNA 4LSEA 4C00A 2IWWA 4LSHA 3FYXA 4RJXA 2N2LA 7PRNA 4C4VA 4JCHA 4AKRA 4O3XB 4FRTA 2GE4A 4FZMA 4GCPA 2Y0KA 4PJ0O 2FGRA 3PQSA 3LK2B 3DZMA 3AAEB 4O49A 3HW9A 4KR4A 2LFUA 2W80C 5E79O 2KXPB 5KAFO 3LK3B 3LK2A 4RLCA 2OMFA 5TISO 3UAQA 4E1SA 2K0LA 3AAEA 4O4XA 5PRNA 1OSMA 5JDPA 1Q9GA 2KXPA 1Q9FA 3LK3A 4B61A 3UPGA 2KZ7A 4AYNA 4C69X 3PQUA 4FSPA 5EE2A 2PRNA 1ZHXA 4K3BA 2R4OA 4K3CA 1P4TA 1PRNA 2JMMA 3GP6A 4LSIA 3LK42 3SY9A 5G39A 1MPFA 2WVPA 4G76A 4AYMC 1QJPA 1GFQA 3A0HO 5FVNA 5GV0A 2F1CX 2F1TA 3G7GA 3QRAA 4O3WA 4BUMX 2QTKA 2XTQA 2Y2XA 3PORA 5ADXK 2R8AA 2XE5A 5DL8A 4XNKA 4D5UA 4D65A 3A0BO 1GFNA 1ZHZA 3VE2A 2IWVA 5GTIO 4E1TA 3BRYA 4FQEA 3NJTA 2Y0LA
chains in the Genus database with same CATH topology
2KZ7B 6PRNA 3O0EA 1E54A 2MNHA 2XMXA 2W81C 3HOLA 4GCSA 8PRNA 2J4UP 3PRNA 4G75A 2X27X 3VZUX 1ZHWA 3HWBA 3VY9X 3AA6B 4Z3TA 4PUXA 3VZWX 3SZDA 4O3ZA 1HXUA 3NSGA 3AA6A 4LSFA 3A2SX 4QQ1A 3AA7B 3VZTX 1G90A 4FESA 3POXA 2XTRA 3AA1A 1BT9A 4FUVA 4FZLA 3AA7A 5DL5A 5ADXL 4JFBA 3DA4A 4O3YA 4FRXA 4GF4A 2O4VA 1OPFA 1MM4A 2J1NA 1YS5A 2K4TA 3AA0B 3DA3A 4FT6A 4KRAA 3TZGA 2Y0HA 5G26A 1BH3A 3AA0A 1THQA 3QRCA 1HXTA 1QJ8A 4RJWA 3C5OA 3VY8X 1ORMA 2N2MA 5DL7A 3SYBA 4AYDC 1BXWA 2KDYA 2LHFA 4KR8A 2MHLA 4AKMA 4F4BA 4RLBA 3UU2A 3POUA 2ZLDA 3SYSA 4U9CA 2KC0A 1QJ9A 1HXXA 2XE1A 2XE3A 3POQA 4D64A 1ZHYA 3JTYA 4AUIA 3AA1B 3WI5A 3K19A 3LK41 4AYEC 1H6S1 1GFPA 2YPVA 2ZFGA 2XE2A 2ERVA 4GCQA 1IZNB 4N59A 1ZHTA 2Y7SA 3HOEA 5T5FA 3T24A 5DL6A 4AZLA 3AAAB 2FGQX 2ODJA 4GHBA 2PORA 1IZNA 4FMSA 4AYID 4RL9A 4AFKA 3V8UA 1GFOA 3KVDD 3AAAA 3T20A 2XG6A 4FSOA 4N58A 2M06A 3VE1A 5D5DA 2M07A 1PHOA 5AFUL 5IYUA 4XNLA 1GFMA 3EMNX 2F1VA 3SY7A 1MM5A 3SZVA 3T0SA 5AFUK 2YNKA 4FOZA 4O4UA 4AKRB 4FZNA 4LSEA 4LSHA 3FYXA 4RJXA 2N2LA 7PRNA 4JCHA 4AKRA 4O3XB 4FRTA 2GE4A 4FZMA 4GCPA 2Y0KA 2FGRA 3PQSA 3LK2B 3AAEB 4O49A 3HW9A 4KR4A 2LFUA 2W80C 3RBHA 2KXPB 3WI4A 3LK3B 3LK2A 4RLCA 2OMFA 3UAQA 4E1SA 2K0LA 3AAEA 4O4XA 5PRNA 1OSMA 5JDPA 1Q9GA 2KXPA 1Q9FA 3LK3A 4B61A 3UPGA 2KZ7A 4AYNA 4C69X 3PQUA 4FSPA 5EE2A 2PRNA 1ZHXA 1P4TA 1PRNA 2JMMA 3GP6A 4LSIA 3LK42 3SY9A 1MPFA 4G76A 4AYMC 1QJPA 1GFQA 5FVNA 5GV0A 3G7GA 2F1TA 3QRAA 4O3WA 4BUMX 2QTKA 2XTQA 2Y2XA 3PORA 5ADXK 2XE5A 5DL8A 4D65A 4XNKA 4D5UA 1GFNA 1ZHZA 3VE2A 4E1TA 2Y0LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 6PRN A;  3O0E A;  1E54 A;  4GCS A;  8PRN A;  2J4U P;  3PRN A;  3VZU X;  3HWB A;  3VY9 X;  3VZW X;  3SZD A;  1HXU A;  3NSG A;  4LSF A;  3A2S X;  3VZT X;  3POX A;  1BT9 A;  5DL5 A;  4JFB A;  4FRX A;  2O4V A;  1OPF A;  2K4T A;  2J1N A;  4FT6 A;  4KRA A;  2Y0H A;  1BH3 A;  1HXT A;  4RJW A;  3VY8 X;  3SYB A;  5DL7 A;  4KR8 A;  3UU2 A;  3POU A;  2ZLD A;  3SYS A;  2XE3 A;  1HXX A;  2XE1 A;  3POQ A;  4D64 A;  3JTY A;  4AUI A;  3WI5 A;  3K19 A;  1H6S 1;  1GFP A;  2ZFG A;  2XE2 A;  4GCQ A;  3T24 A;  5DL6 A;  2FGQ X;  2ODJ A;  4FMS A;  2POR A;  1GFO A;  3T20 A;  2XG6 A;  4FSO A;  1PHO A;  1GFM A;  3EMN X;  3SY7 A;  3SZV A;  3T0S A;  4FOZ A;  4LSE A;  4LSH A;  3FYX A;  4RJX A;  7PRN A;  4FRT A;  4GCP A;  2Y0K A;  2FGR A;  3HW9 A;  4KR4 A;  3WI4 A;  2OMF A;  5JDP A;  5PRN A;  1OSM A;  3UPG A;  4C69 X;  4FSP A;  2PRN A;  1PRN A;  4LSI A;  3SY9 A;  1MPF A;  1GFQ A;  5FVN A;  4BUM X;  2QTK A;  2Y2X A;  3POR A;  2XE5 A;  5DL8 A;  4D65 A;  4D5U A;  1GFN A;  2Y0L A; 
#chains in the Genus database with same CATH topology
 5B5E O;  2KZ7 B;  6PRN A;  3O0E A;  1E54 A;  1T1L A;  2MNH A;  2XMX A;  2W81 C;  3HOL A;  4GCS A;  2R89 A;  8PRN A;  3PRN A;  3DWO X;  5H2F O;  4G75 A;  2X27 X;  2J4U P;  5GTH O;  3VZU X;  1ZHW A;  3HWB A;  3VY9 X;  3WI4 A;  2WJR A;  3AA6 B;  3BRZ A;  4Z3T A;  4PUX A;  3VZW X;  3SZD A;  4O3Z A;  1HXU A;  3NSG A;  3PGR A;  5G38 A;  3AA6 A;  4LSF A;  3A2S X;  4QQ1 A;  3AA7 B;  3VZT X;  1G90 A;  4FES A;  3POX A;  2XTR A;  3AA1 A;  1BT9 A;  4FUV A;  4N74 A;  4FZL A;  3AA7 A;  5DL5 A;  5B66 O;  5ADX L;  4JFB A;  2R4N A;  3DA4 A;  4FRX A;  4O3Y A;  4GF4 A;  2O4V A;  4UB6 O;  2K4T A;  1MM4 A;  1OPF A;  1YS5 A;  2J1N A;  3AA0 B;  3DA3 A;  4FT6 A;  4KRA A;  3TZG A;  2Y0H A;  4AZL A;  2X9K A;  5G26 A;  1BH3 A;  4UB8 O;  3AA0 A;  1THQ A;  3KZI O;  3QRC A;  1HXT A;  1QJ8 A;  4RJW A;  3C5O A;  3VY8 X;  1S5L O;  1ORM A;  2N2M A;  5DL7 A;  3SYB A;  4AYD C;  1BXW A;  2KDY A;  2LHF A;  4KR8 A;  2MHL A;  4AKM A;  4F4B A;  4RLB A;  3JCU O;  2JQY A;  3UU2 A;  3WU2 O;  3POU A;  2ZLD A;  3SYS A;  4U9C A;  2KC0 A;  1QJ9 A;  1HXX A;  2XE1 A;  2XE3 A;  3DWN A;  3POQ A;  4D64 A;  1ZHY A;  3JTY A;  4AUI A;  3AA1 B;  3BS0 A;  3WI5 A;  3K19 A;  3LK4 1;  4AYE C;  1H6S 1;  3PGU A;  1GFP A;  2YPV A;  2ZFG A;  2XE2 A;  2WJQ A;  4PR7 A;  4N75 A;  2R4L A;  2ERV A;  1IZN B;  4GCQ A;  4N59 A;  1ZHT A;  2Y7S A;  3HOE A;  5KAI O;  2AXT O;  5T5F A;  4IL6 O;  3PGS A;  5DL6 A;  3AAA B;  3T24 A;  2FGQ X;  2ODJ A;  4GHB A;  2POR A;  1IZN A;  4FMS A;  4AYI D;  2R88 A;  4RL9 A;  4AFK A;  3V8U A;  1GFO A;  3KVD D;  1T16 A;  3PF1 A;  3AAA A;  3T20 A;  2XG6 A;  4FSO A;  4N58 A;  2M06 A;  3VE1 A;  5D5D A;  5G3A A;  2R4P A;  2M07 A;  1PHO A;  4CTD A;  5AFU L;  5IYU A;  3RBH A;  4XNL A;  1GFM A;  3EMN X;  2F1V A;  3SY7 A;  1MM5 A;  3SZV A;  3T0S A;  5AFU K;  2YNK A;  4FOZ A;  4O4U A;  4C4V B;  4AKR B;  4FZN A;  4LSE A;  4C00 A;  2IWW A;  4LSH A;  3FYX A;  4RJX A;  2N2L A;  7PRN A;  4C4V A;  4JCH A;  4AKR A;  4O3X B;  4FRT A;  2GE4 A;  4FZM A;  4GCP A;  2Y0K A;  4PJ0 O;  2FGR A;  3PQS A;  3LK2 B;  3DZM A;  3AAE B;  4O49 A;  3HW9 A;  4KR4 A;  2LFU A;  2W80 C;  5E79 O;  2KXP B;  5KAF O;  3LK3 B;  3LK2 A;  4RLC A;  2OMF A;  5TIS O;  3UAQ A;  4E1S A;  2K0L A;  3AAE A;  4O4X A;  5PRN A;  1OSM A;  5JDP A;  1Q9G A;  2KXP A;  1Q9F A;  3LK3 A;  4B61 A;  3UPG A;  2KZ7 A;  4AYN A;  4C69 X;  3PQU A;  4FSP A;  5EE2 A;  2PRN A;  1ZHX A;  4K3B A;  2R4O A;  4K3C A;  1P4T A;  1PRN A;  2JMM A;  3GP6 A;  4LSI A;  3LK4 2;  3SY9 A;  5G39 A;  1MPF A;  2WVP A;  4G76 A;  4AYM C;  1QJP A;  1GFQ A;  3A0H O;  5FVN A;  5GV0 A;  2F1C X;  2F1T A;  3G7G A;  3QRA A;  4O3W A;  4BUM X;  2QTK A;  2XTQ A;  2Y2X A;  3POR A;  5ADX K;  2R8A A;  2XE5 A;  5DL8 A;  4XNK A;  4D5U A;  4D65 A;  3A0B O;  1GFN A;  1ZHZ A;  3VE2 A;  2IWV A;  5GTI O;  4E1T A;  3BRY A;  4FQE A;  3NJT A;  2Y0L A; 
#chains in the Genus database with same CATH homology
 2KZ7 B;  6PRN A;  3O0E A;  1E54 A;  2MNH A;  2XMX A;  2W81 C;  3HOL A;  4GCS A;  8PRN A;  2J4U P;  3PRN A;  4G75 A;  2X27 X;  3VZU X;  1ZHW A;  3HWB A;  3VY9 X;  3AA6 B;  4Z3T A;  4PUX A;  3VZW X;  3SZD A;  4O3Z A;  1HXU A;  3NSG A;  3AA6 A;  4LSF A;  3A2S X;  4QQ1 A;  3AA7 B;  3VZT X;  1G90 A;  4FES A;  3POX A;  2XTR A;  3AA1 A;  1BT9 A;  4FUV A;  4FZL A;  3AA7 A;  5DL5 A;  5ADX L;  4JFB A;  3DA4 A;  4O3Y A;  4FRX A;  4GF4 A;  2O4V A;  1OPF A;  1MM4 A;  2J1N A;  1YS5 A;  2K4T A;  3AA0 B;  3DA3 A;  4FT6 A;  4KRA A;  3TZG A;  2Y0H A;  5G26 A;  1BH3 A;  3AA0 A;  1THQ A;  3QRC A;  1HXT A;  1QJ8 A;  4RJW A;  3C5O A;  3VY8 X;  1ORM A;  2N2M A;  5DL7 A;  3SYB A;  4AYD C;  1BXW A;  2KDY A;  2LHF A;  4KR8 A;  2MHL A;  4AKM A;  4F4B A;  4RLB A;  3UU2 A;  3POU A;  2ZLD A;  3SYS A;  4U9C A;  2KC0 A;  1QJ9 A;  1HXX A;  2XE1 A;  2XE3 A;  3POQ A;  4D64 A;  1ZHY A;  3JTY A;  4AUI A;  3AA1 B;  3WI5 A;  3K19 A;  3LK4 1;  4AYE C;  1H6S 1;  1GFP A;  2YPV A;  2ZFG A;  2XE2 A;  2ERV A;  4GCQ A;  1IZN B;  4N59 A;  1ZHT A;  2Y7S A;  3HOE A;  5T5F A;  3T24 A;  5DL6 A;  4AZL A;  3AAA B;  2FGQ X;  2ODJ A;  4GHB A;  2POR A;  1IZN A;  4FMS A;  4AYI D;  4RL9 A;  4AFK A;  3V8U A;  1GFO A;  3KVD D;  3AAA A;  3T20 A;  2XG6 A;  4FSO A;  4N58 A;  2M06 A;  3VE1 A;  5D5D A;  2M07 A;  1PHO A;  5AFU L;  5IYU A;  4XNL A;  1GFM A;  3EMN X;  2F1V A;  3SY7 A;  1MM5 A;  3SZV A;  3T0S A;  5AFU K;  2YNK A;  4FOZ A;  4O4U A;  4AKR B;  4FZN A;  4LSE A;  4LSH A;  3FYX A;  4RJX A;  2N2L A;  7PRN A;  4JCH A;  4AKR A;  4O3X B;  4FRT A;  2GE4 A;  4FZM A;  4GCP A;  2Y0K A;  2FGR A;  3PQS A;  3LK2 B;  3AAE B;  4O49 A;  3HW9 A;  4KR4 A;  2LFU A;  2W80 C;  3RBH A;  2KXP B;  3WI4 A;  3LK3 B;  3LK2 A;  4RLC A;  2OMF A;  3UAQ A;  4E1S A;  2K0L A;  3AAE A;  4O4X A;  5PRN A;  1OSM A;  5JDP A;  1Q9G A;  2KXP A;  1Q9F A;  3LK3 A;  4B61 A;  3UPG A;  2KZ7 A;  4AYN A;  4C69 X;  3PQU A;  4FSP A;  5EE2 A;  2PRN A;  1ZHX A;  1P4T A;  1PRN A;  2JMM A;  3GP6 A;  4LSI A;  3LK4 2;  3SY9 A;  1MPF A;  4G76 A;  4AYM C;  1QJP A;  1GFQ A;  5FVN A;  5GV0 A;  3G7G A;  2F1T A;  3QRA A;  4O3W A;  4BUM X;  2QTK A;  2XTQ A;  2Y2X A;  3POR A;  5ADX K;  2XE5 A;  5DL8 A;  4D65 A;  4XNK A;  4D5U A;  1GFN A;  1ZHZ A;  3VE2 A;  4E1T A;  2Y0L A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...