3T0SA

Crystal structure of pseudomonas aeruginosa occk4 (opdl)
Total Genus 92
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
389
structure length
361
Chain Sequence
LADSSAHLDLRNFYQLRDYRQSQAGNWSQGFVLRLQSGFTGGPLGFGLDATGLLGVKLPVDDYSHLGLTAKLRYSQTQLQVGILMPQLPVAFRDDVRLLPQTFDGALLTSSEIEGLTLTAGQLWKSRTRESDDMYIMGRDKAHASDEFNLAGATYAFTPRLSASYYYGQLKDIYRQHYLGLLHTLPLGEGLSLRSDLRYFDSGEDGAAISGPVDNRNLNAMLTLRAGAHAFGIGVQKMIGNDAFPVLNGYTTPYVANLMAYQTFTRPQEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDRGAGRADDSEWERNTDLSYVIQSGPLKSVALKWRNITYRSRYGADLDENRFIVNYTLKLW
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
molecule keywords porin
source organism Pseudomonas aeruginosa
molecule tags Membrane protein
total genus 92
structure length 361
sequence length 389
ec nomenclature
pdb deposition date 2011-07-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3t0sA01
1H6S1 2XE5A 2XG6A 1MPFA 2Y2XA 3PORA 5DL8A 4GCQA 2K4TA 2J1NA 4FSOA 1GFQA 3EMNX 4KR4A 3JTYA 3POXA 4RJWA 4D5UA 1GFNA 3WI4A 2FGQX 1GFMA 4FT6A 3VZTX 2ODJA 4JFBA 2XE2A 3VY9X 5DL5A 4LSEA 4FOZA 3T24A 1GFPA 4GCSA 6PRNA 5JDPA 3HWBA 3O0EA 3FYXA 3WI5A 2Y0KA 2PRNA 5FVNA 2FGRA 3SZVA 1HXUA 4FRXA 3VZUX 3SYSA 8PRNA 3T20A 2O4VA 4D64A 3UPGA 3SZDA 3SY7A 7PRNA 1OPFA 3NSGA 4D65A 1BT9A 2ZLDA 4FSPA 3VZWX 4KRAA 1PHOA 3POUA 4FRTA 5PRNA 1BH3A 2J4UP 5DL7A 4LSIA 2XE3A 2XE1A 3PRNA 1GFOA 1PRNA 4KR8A 4LSFA 3HW9A 2Y0HA 4C69X 4FMSA 3K19A 2PORA 3POQA 3SY9A 4GCPA 1E54A 4RJXA 2QTKA 4LSHA 3UU2A 1HXXA 3T0SA 2ZFGA 1OSMA 4BUMX 2Y0LA 3A2SX 2OMFA 1HXTA 3VY8X 5DL6A 4AUIA 3SYBA
chains in the Genus database with same CATH superfamily
4F4BA 2KXPB 3UU2A 1H6S1 4N75A 3C5OA 4AYDC 2XE5A 5GV0A 1IZNB 2GE4A 1ZHTA 1ZHYA 2XG6A 1MPFA 2Y2XA 3PORA 4K3CA 5DL8A 2XTRA 3VE2A 4N59A 5H2FO 2XTQA 4N74A 3DWOX 4GCQA 2K4TA 2J1NA 3KZIO 4FSOA 1QJ8A 1GFQA 3EMNX 2KDYA 3JTYA 4FQEA 4K3BA 4KR4A 4RLBA 3POXA 4RJWA 4D5UA 1GFNA 4G76A 5IYUA 3WI4A 4AKMA 2Y7SA 1THQA 2FGQX 4O4XA 2M07A 4B61A 3LK2B 3PGSA 4O3WA 1GFMA 3LK42 4O4UA 4O3ZA 4FT6A 3VZTX 2ODJA 5T5FA 4JFBA 2ERVA 2XE2A 2R4PA 5G39A 3VY9X 4AFKA 5DL5A 2MHLA 3DA4A 4LSEA 2WVPA 4GF4A 4AYEC 2F1VA 1S5LO 4QQ1A 5GTHO 4AYMC 4XNLA 1QJ9A 5KAIO 3RBHA 5G38A 2KC0A 4FOZA 3T24A 1IZNA 2N2MA 5KAFO 2X27X 1GFPA 3PF1A 4GCSA 6PRNA 4C4VA 5JDPA 2W80C 4JCHA 3HWBA 3O0EA 3FYXA 1ZHXA 3BRYA 3A0BO 2AXTO 4PR7A 3AA7B 3UAQA 3WI5A 3WU2O 4G75A 1T16A 4AKRB 5B5EO 5AFUK 3PQSA 1ZHWA 4AYID 3AAEB 3V8UA 2Y0KA 2JMMA 2PRNA 5FVNA 2FGRA 3AA1B 1QJPA 2R8AA 3DA3A 3HOLA 1HXUA 4O3XB 3SZVA 3QRCA 4FRXA 3VZUX 4AYNA 3LK3B 3SYSA 4CTDA 8PRNA 3T20A 2O4VA 3PQUA 5G26A 2WJRA 2F1CX 4D64A 3UPGA 3SZDA 2YPVA 3SY7A 7PRNA 4RLCA 1OPFA 2LFUA 3NSGA 4D65A 1BT9A 4UB6O 2KXPA 2ZLDA 3AAAB 4FSPA 1MM5A 1ORMA 3AA6B 3JCUO 2YNKA 3VZWX 4KRAA 3G7GA 2K0LA 4FZNA 3KVDD 4U9CA 4AZLA 5GTIO 2R88A 1PHOA 1G90A 3POUA 4FRTA 4N58A 2WJQA 4UB8O 4PJ0O 5G3AA 5PRNA 2M06A 1BH3A 2F1TA 2W81C 2JQYA 5DL7A 2J4UP 3DZMA 4Z3TA 4LSIA 3AA0B 1P4TA 2XE3A 2XE1A 3PRNA 3NJTA 1GFOA 4XNKA 3LK2A 1T1LA 3AA1A 3VE1A 3A0HO 2X9KA 1PRNA 4E1SA 3LK3A 3GP6A 4GHBA 2MNHA 4KR8A 4PUXA 4RL9A 4LSFA 1YS5A 5ADXK 1Q9GA 2KZ7B 1MM4A 2R4NA 3HW9A 4FUVA 4E1TA 3HOEA 3TZGA 2Y0HA 2R89A 4C69X 4FMSA 3K19A 4C4VB 3AAAA 2IWVA 5E79O 5AFUL 5EE2A 3AA6A 2PORA 3POQA 3BS0A 3QRAA 3PGRA 3LK41 3SY9A 4C00A 4GCPA 4AKRA 3AA7A 2R4LA 3BRZA 1E54A 2R4OA 4RJXA 2QTKA 3AA0A 4LSHA 3AAEA 1HXXA 3T0SA 2LHFA 1BXWA 2ZFGA 1OSMA 4O3YA 5TISO 4O49A 4BUMX 5B66O 5ADXL 3DWNA 4IL6O 2Y0LA 1Q9FA 3A2SX 4FESA 2OMFA 5D5DA 1ZHZA 2XMXA 1HXTA 3VY8X 2IWWA 5DL6A 4FZMA 4FZLA 3PGUA 4AUIA 2KZ7A 3SYBA 2N2LA
chains in the Genus database with same CATH topology
4F4BA 2KXPB 3UU2A 1H6S1 4AYDC 3C5OA 2XE5A 5GV0A 1IZNB 2GE4A 1ZHTA 1ZHYA 2XG6A 1MPFA 2Y2XA 3PORA 5DL8A 3VE2A 2XTRA 4N59A 2XTQA 4GCQA 2K4TA 2J1NA 3UAQA 4FSOA 1QJ8A 1GFQA 3EMNX 2KDYA 3JTYA 4KR4A 4RLBA 3POXA 4RJWA 4D5UA 1GFNA 4G76A 5IYUA 3WI4A 4AKMA 2Y7SA 1THQA 2FGQX 4O4XA 2M07A 4B61A 3LK2B 4O3WA 1GFMA 3LK42 4O4UA 4O3ZA 4FT6A 3VZTX 2ODJA 5T5FA 4JFBA 2ERVA 2XE2A 4AFKA 3VY9X 5DL5A 2MHLA 3DA4A 4LSEA 4GF4A 4AYEC 2F1VA 4QQ1A 4AYMC 4XNLA 1QJ9A 3RBHA 2KC0A 4FOZA 3T24A 1IZNA 2N2MA 2X27X 1GFPA 4GCSA 6PRNA 5JDPA 2W80C 4JCHA 3HWBA 3O0EA 3FYXA 1ZHXA 4AKRB 3AA7B 3WI5A 4G75A 5AFUK 3PQSA 1ZHWA 4AYID 3AAEB 3V8UA 2Y0KA 2JMMA 2PRNA 5FVNA 2FGRA 3AA1B 1QJPA 3DA3A 3HOLA 4O3XB 1HXUA 3SZVA 3QRCA 4FRXA 3VZUX 4AYNA 3LK3B 3SYSA 8PRNA 3T20A 2O4VA 3PQUA 5G26A 4D64A 3UPGA 3SZDA 2YPVA 3SY7A 7PRNA 4RLCA 1OPFA 2LFUA 3NSGA 4D65A 1BT9A 2KXPA 2ZLDA 3AAAB 4FSPA 1MM5A 1ORMA 3AA6B 3VZWX 2YNKA 4KRAA 3G7GA 2K0LA 4FZNA 3KVDD 4U9CA 4AZLA 1G90A 1PHOA 3POUA 4FRTA 4N58A 5PRNA 2M06A 1BH3A 2F1TA 2W81C 5DL7A 2J4UP 4Z3TA 4LSIA 3AA0B 1P4TA 2XE3A 2XE1A 3PRNA 1GFOA 4XNKA 3LK2A 3AA1A 3VE1A 1PRNA 4E1SA 3LK3A 3GP6A 4GHBA 2MNHA 4KR8A 4PUXA 4RL9A 4LSFA 1YS5A 5ADXK 1Q9GA 2KZ7B 1MM4A 3HW9A 4FUVA 4E1TA 3HOEA 3TZGA 2Y0HA 4C69X 4FMSA 3K19A 3AAAA 5AFUL 5EE2A 3AA6A 2PORA 3POQA 3QRAA 3LK41 3SY9A 4GCPA 4AKRA 3AA7A 1E54A 4RJXA 2QTKA 3AA0A 4LSHA 3AAEA 1HXXA 3T0SA 2LHFA 1BXWA 2ZFGA 1OSMA 4O3YA 5ADXL 4O49A 4BUMX 2Y0LA 1Q9FA 3A2SX 4FESA 2OMFA 5D5DA 1ZHZA 2XMXA 1HXTA 3VY8X 5DL6A 4FZMA 4FZLA 4AUIA 2KZ7A 3SYBA 2N2LA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1H6S 1;  2XE5 A;  2XG6 A;  1MPF A;  2Y2X A;  3POR A;  5DL8 A;  4GCQ A;  2K4T A;  2J1N A;  4FSO A;  1GFQ A;  3EMN X;  4KR4 A;  3JTY A;  3POX A;  4RJW A;  4D5U A;  1GFN A;  3WI4 A;  2FGQ X;  1GFM A;  4FT6 A;  3VZT X;  2ODJ A;  4JFB A;  2XE2 A;  3VY9 X;  5DL5 A;  4LSE A;  4FOZ A;  3T24 A;  1GFP A;  4GCS A;  6PRN A;  5JDP A;  3HWB A;  3O0E A;  3FYX A;  3WI5 A;  2Y0K A;  2PRN A;  5FVN A;  2FGR A;  3SZV A;  1HXU A;  4FRX A;  3VZU X;  3SYS A;  8PRN A;  3T20 A;  2O4V A;  4D64 A;  3UPG A;  3SZD A;  3SY7 A;  7PRN A;  1OPF A;  3NSG A;  4D65 A;  1BT9 A;  2ZLD A;  4FSP A;  3VZW X;  4KRA A;  1PHO A;  3POU A;  4FRT A;  5PRN A;  1BH3 A;  2J4U P;  5DL7 A;  4LSI A;  2XE3 A;  2XE1 A;  3PRN A;  1GFO A;  1PRN A;  4KR8 A;  4LSF A;  3HW9 A;  2Y0H A;  4C69 X;  4FMS A;  3K19 A;  2POR A;  3POQ A;  3SY9 A;  4GCP A;  1E54 A;  4RJX A;  2QTK A;  4LSH A;  3UU2 A;  1HXX A;  3T0S A;  2ZFG A;  1OSM A;  4BUM X;  2Y0L A;  3A2S X;  2OMF A;  1HXT A;  3VY8 X;  5DL6 A;  4AUI A;  3SYB A; 
#chains in the Genus database with same CATH topology
 4F4B A;  2KXP B;  3UU2 A;  1H6S 1;  4N75 A;  3C5O A;  4AYD C;  2XE5 A;  5GV0 A;  1IZN B;  2GE4 A;  1ZHT A;  1ZHY A;  2XG6 A;  1MPF A;  2Y2X A;  3POR A;  4K3C A;  5DL8 A;  2XTR A;  3VE2 A;  4N59 A;  5H2F O;  2XTQ A;  4N74 A;  3DWO X;  4GCQ A;  2K4T A;  2J1N A;  3KZI O;  4FSO A;  1QJ8 A;  1GFQ A;  3EMN X;  2KDY A;  3JTY A;  4FQE A;  4K3B A;  4KR4 A;  4RLB A;  3POX A;  4RJW A;  4D5U A;  1GFN A;  4G76 A;  5IYU A;  3WI4 A;  4AKM A;  2Y7S A;  1THQ A;  2FGQ X;  4O4X A;  2M07 A;  4B61 A;  3LK2 B;  3PGS A;  4O3W A;  1GFM A;  3LK4 2;  4O4U A;  4O3Z A;  4FT6 A;  3VZT X;  2ODJ A;  5T5F A;  4JFB A;  2ERV A;  2XE2 A;  2R4P A;  5G39 A;  3VY9 X;  4AFK A;  5DL5 A;  2MHL A;  3DA4 A;  4LSE A;  2WVP A;  4GF4 A;  4AYE C;  2F1V A;  1S5L O;  4QQ1 A;  5GTH O;  4AYM C;  4XNL A;  1QJ9 A;  5KAI O;  3RBH A;  5G38 A;  2KC0 A;  4FOZ A;  3T24 A;  1IZN A;  2N2M A;  5KAF O;  2X27 X;  1GFP A;  3PF1 A;  4GCS A;  6PRN A;  4C4V A;  5JDP A;  2W80 C;  4JCH A;  3HWB A;  3O0E A;  3FYX A;  1ZHX A;  3BRY A;  3A0B O;  2AXT O;  4PR7 A;  3AA7 B;  3UAQ A;  3WI5 A;  3WU2 O;  4G75 A;  1T16 A;  4AKR B;  5B5E O;  5AFU K;  3PQS A;  1ZHW A;  4AYI D;  3AAE B;  3V8U A;  2Y0K A;  2JMM A;  2PRN A;  5FVN A;  2FGR A;  3AA1 B;  1QJP A;  2R8A A;  3DA3 A;  3HOL A;  1HXU A;  4O3X B;  3SZV A;  3QRC A;  4FRX A;  3VZU X;  4AYN A;  3LK3 B;  3SYS A;  4CTD A;  8PRN A;  3T20 A;  2O4V A;  3PQU A;  5G26 A;  2WJR A;  2F1C X;  4D64 A;  3UPG A;  3SZD A;  2YPV A;  3SY7 A;  7PRN A;  4RLC A;  1OPF A;  2LFU A;  3NSG A;  4D65 A;  1BT9 A;  4UB6 O;  2KXP A;  2ZLD A;  3AAA B;  4FSP A;  1MM5 A;  1ORM A;  3AA6 B;  3JCU O;  2YNK A;  3VZW X;  4KRA A;  3G7G A;  2K0L A;  4FZN A;  3KVD D;  4U9C A;  4AZL A;  5GTI O;  2R88 A;  1PHO A;  1G90 A;  3POU A;  4FRT A;  4N58 A;  2WJQ A;  4UB8 O;  4PJ0 O;  5G3A A;  5PRN A;  2M06 A;  1BH3 A;  2F1T A;  2W81 C;  2JQY A;  5DL7 A;  2J4U P;  3DZM A;  4Z3T A;  4LSI A;  3AA0 B;  1P4T A;  2XE3 A;  2XE1 A;  3PRN A;  3NJT A;  1GFO A;  4XNK A;  3LK2 A;  1T1L A;  3AA1 A;  3VE1 A;  3A0H O;  2X9K A;  1PRN A;  4E1S A;  3LK3 A;  3GP6 A;  4GHB A;  2MNH A;  4KR8 A;  4PUX A;  4RL9 A;  4LSF A;  1YS5 A;  5ADX K;  1Q9G A;  2KZ7 B;  1MM4 A;  2R4N A;  3HW9 A;  4FUV A;  4E1T A;  3HOE A;  3TZG A;  2Y0H A;  2R89 A;  4C69 X;  4FMS A;  3K19 A;  4C4V B;  3AAA A;  2IWV A;  5E79 O;  5AFU L;  5EE2 A;  3AA6 A;  2POR A;  3POQ A;  3BS0 A;  3QRA A;  3PGR A;  3LK4 1;  3SY9 A;  4C00 A;  4GCP A;  4AKR A;  3AA7 A;  2R4L A;  3BRZ A;  1E54 A;  2R4O A;  4RJX A;  2QTK A;  3AA0 A;  4LSH A;  3AAE A;  1HXX A;  3T0S A;  2LHF A;  1BXW A;  2ZFG A;  1OSM A;  4O3Y A;  5TIS O;  4O49 A;  4BUM X;  5B66 O;  5ADX L;  3DWN A;  4IL6 O;  2Y0L A;  1Q9F A;  3A2S X;  4FES A;  2OMF A;  5D5D A;  1ZHZ A;  2XMX A;  1HXT A;  3VY8 X;  2IWW A;  5DL6 A;  4FZM A;  4FZL A;  3PGU A;  4AUI A;  2KZ7 A;  3SYB A;  2N2L A; 
#chains in the Genus database with same CATH homology
 4F4B A;  2KXP B;  3UU2 A;  1H6S 1;  4AYD C;  3C5O A;  2XE5 A;  5GV0 A;  1IZN B;  2GE4 A;  1ZHT A;  1ZHY A;  2XG6 A;  1MPF A;  2Y2X A;  3POR A;  5DL8 A;  3VE2 A;  2XTR A;  4N59 A;  2XTQ A;  4GCQ A;  2K4T A;  2J1N A;  3UAQ A;  4FSO A;  1QJ8 A;  1GFQ A;  3EMN X;  2KDY A;  3JTY A;  4KR4 A;  4RLB A;  3POX A;  4RJW A;  4D5U A;  1GFN A;  4G76 A;  5IYU A;  3WI4 A;  4AKM A;  2Y7S A;  1THQ A;  2FGQ X;  4O4X A;  2M07 A;  4B61 A;  3LK2 B;  4O3W A;  1GFM A;  3LK4 2;  4O4U A;  4O3Z A;  4FT6 A;  3VZT X;  2ODJ A;  5T5F A;  4JFB A;  2ERV A;  2XE2 A;  4AFK A;  3VY9 X;  5DL5 A;  2MHL A;  3DA4 A;  4LSE A;  4GF4 A;  4AYE C;  2F1V A;  4QQ1 A;  4AYM C;  4XNL A;  1QJ9 A;  3RBH A;  2KC0 A;  4FOZ A;  3T24 A;  1IZN A;  2N2M A;  2X27 X;  1GFP A;  4GCS A;  6PRN A;  5JDP A;  2W80 C;  4JCH A;  3HWB A;  3O0E A;  3FYX A;  1ZHX A;  4AKR B;  3AA7 B;  3WI5 A;  4G75 A;  5AFU K;  3PQS A;  1ZHW A;  4AYI D;  3AAE B;  3V8U A;  2Y0K A;  2JMM A;  2PRN A;  5FVN A;  2FGR A;  3AA1 B;  1QJP A;  3DA3 A;  3HOL A;  4O3X B;  1HXU A;  3SZV A;  3QRC A;  4FRX A;  3VZU X;  4AYN A;  3LK3 B;  3SYS A;  8PRN A;  3T20 A;  2O4V A;  3PQU A;  5G26 A;  4D64 A;  3UPG A;  3SZD A;  2YPV A;  3SY7 A;  7PRN A;  4RLC A;  1OPF A;  2LFU A;  3NSG A;  4D65 A;  1BT9 A;  2KXP A;  2ZLD A;  3AAA B;  4FSP A;  1MM5 A;  1ORM A;  3AA6 B;  3VZW X;  2YNK A;  4KRA A;  3G7G A;  2K0L A;  4FZN A;  3KVD D;  4U9C A;  4AZL A;  1G90 A;  1PHO A;  3POU A;  4FRT A;  4N58 A;  5PRN A;  2M06 A;  1BH3 A;  2F1T A;  2W81 C;  5DL7 A;  2J4U P;  4Z3T A;  4LSI A;  3AA0 B;  1P4T A;  2XE3 A;  2XE1 A;  3PRN A;  1GFO A;  4XNK A;  3LK2 A;  3AA1 A;  3VE1 A;  1PRN A;  4E1S A;  3LK3 A;  3GP6 A;  4GHB A;  2MNH A;  4KR8 A;  4PUX A;  4RL9 A;  4LSF A;  1YS5 A;  5ADX K;  1Q9G A;  2KZ7 B;  1MM4 A;  3HW9 A;  4FUV A;  4E1T A;  3HOE A;  3TZG A;  2Y0H A;  4C69 X;  4FMS A;  3K19 A;  3AAA A;  5AFU L;  5EE2 A;  3AA6 A;  2POR A;  3POQ A;  3QRA A;  3LK4 1;  3SY9 A;  4GCP A;  4AKR A;  3AA7 A;  1E54 A;  4RJX A;  2QTK A;  3AA0 A;  4LSH A;  3AAE A;  1HXX A;  3T0S A;  2LHF A;  1BXW A;  2ZFG A;  1OSM A;  4O3Y A;  5ADX L;  4O49 A;  4BUM X;  2Y0L A;  1Q9F A;  3A2S X;  4FES A;  2OMF A;  5D5D A;  1ZHZ A;  2XMX A;  1HXT A;  3VY8 X;  5DL6 A;  4FZM A;  4FZL A;  4AUI A;  2KZ7 A;  3SYB A;  2N2L A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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