3T0SA

Crystal structure of pseudomonas aeruginosa occk4 (opdl)
Total Genus 92
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
92
sequence length
389
structure length
361
Chain Sequence
LADSSAHLDLRNFYQLRDYRQSQAGNWSQGFVLRLQSGFTGGPLGFGLDATGLLGVKLPVDDYSHLGLTAKLRYSQTQLQVGILMPQLPVAFRDDVRLLPQTFDGALLTSSEIEGLTLTAGQLWKSRTRESDDMYIMGRDKAHASDEFNLAGATYAFTPRLSASYYYGQLKDIYRQHYLGLLHTLPLGEGLSLRSDLRYFDSGEDGAAISGPVDNRNLNAMLTLRAGAHAFGIGVQKMIGNDAFPVLNGYTTPYVANLMAYQTFTRPQEKSWQLRYDYDFAGLGLPGLNLMTRYVQGRDIDRGAGRADDSEWERNTDLSYVIQSGPLKSVALKWRNITYRSRYGADLDENRFIVNYTLKLW
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Membrane protein
source organism Pseudomonas aeruginosa
publication title Substrate Specificity within a Family of Outer Membrane Carboxylate Channels.
pubmed doi rcsb
molecule keywords porin
total genus 92
structure length 361
sequence length 389
ec nomenclature
pdb deposition date 2011-07-20
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3t0sA01
5DL8A 2XE5A 3JTYA 4LSFA 3HW9A 4D64A 1HXUA 1HXTA 3SYSA 5PRNA 4LSHA 3VZUX 3WI4A 1GFMA 4FMSA 3VZWX 4FSOA 2XE3A 1BT9A 2Y0HA 3SYBA 4LSEA 3POQA 1GFQA 5FVNA 3FYXA 3VZTX 2FGRA 2OMFA 7PRNA 2J1NA 2PRNA 8PRNA 4FRXA 1GFPA 1PHOA 4GCPA 2Y0LA 4BUMX 1OSMA 4JFBA 5JDPA 5DL7A 2Y2XA 2XE2A 3EMNX 3VY8X 4D65A 3UPGA 3WI5A 4C69X 2FGQX 2ZFGA 1H6S1 3SZDA 2ZLDA 4FOZA 4D5UA 3NSGA 1E54A 3SY7A 4FSPA 4LSIA 4KR8A 4FRTA 3POXA 3VY9X 3POUA 2QTKA 2XE1A 4KR4A 1MPFA 3O0EA 1BH3A 3K19A 3A2SX 2XG6A 5DL5A 4RJXA 3HWBA 3T0SA 1PRNA 4RJWA 3T20A 4GCQA 3SY9A 2K4TA 2ODJA 5DL6A 3PORA 1HXXA 1OPFA 2PORA 1GFNA 3SZVA 1GFOA 3T24A 3PRNA 2O4VA 3UU2A 4GCSA 2J4UP 6PRNA 4FT6A 4AUIA 2Y0KA 4KRAA
chains in the Genus database with same CATH superfamily
4AKMA 3BRYA 5DL8A 4K3CA 2XE5A 4C4VA 5G39A 5GTHO 2KXPA 3AA6B 1S5LO 3JTYA 4LSFA 3HOLA 2N2MA 3HW9A 4XNLA 4D64A 4N59A 1BXWA 1HXUA 1HXTA 4O3XB 2GE4A 4AKRA 5B5EO 3SYSA 5PRNA 4JCHA 2IWWA 2XMXA 5G38A 5EE2A 1Q9GA 2X27X 4LSHA 1IZNB 3VZUX 3AA0B 3WI4A 1GFMA 2ERVA 2JMMA 4FMSA 3VZWX 2KDYA 4FSOA 4AYID 3DZMA 3A0HO 4FESA 4PR7A 4UB8O 3BS0A 2K0LA 1QJ9A 2XE3A 3AA1B 1BT9A 2Y0HA 4UB6O 5GTIO 4CTDA 1ZHZA 2LHFA 3SYBA 4LSEA 3PGSA 1GFQA 3POQA 4Z3TA 5ADXK 1G90A 3FYXA 4O4UA 5FVNA 1T1LA 3VZTX 4U9CA 2FGRA 4N74A 4E1SA 2OMFA 3KVDD 7PRNA 2J1NA 4AYEC 3AA7A 3KZIO 3V8UA 4PJ0O 2PRNA 2F1VA 3AAEA 3JCUO 2F1CX 2X9KA 3HOEA 4RLBA 8PRNA 1THQA 4FRXA 4KRAA 5AFUK 2WJQA 1GFPA 4RLCA 1PHOA 4GCPA 2Y0LA 3PQSA 2XTQA 3LK3B 5GV0A 4BUMX 3PQUA 2YNKA 4FZMA 3LK2B 1OSMA 4JFBA 5JDPA 1ORMA 4AZLA 3WU2O 4IL6O 4FZLA 5DL7A 2Y2XA 2XE2A 3EMNX 3UAQA 5B66O 1MM5A 1IZNA 3A0BO 3VY8X 4C4VB 2R4NA 3AA0A 2KXPB 3LK42 4O3ZA 3UPGA 1Q9FA 1ZHXA 3WI5A 2FGQX 3QRCA 2KC0A 2ZFGA 4FZNA 1H6S1 4GF4A 4O4XA 5T5FA 3SZDA 2LFUA 3PGRA 2WVPA 5KAFO 2M07A 3AA1A 4AYNA 2ZLDA 4D65A 4FOZA 2R4LA 4D5UA 2YPVA 4FUVA 3DA4A 1ZHWA 1P4TA 2KZ7A 3VE1A 5IYUA 3NSGA 1ZHTA 3G7GA 3C5OA 4G75A 3GP6A 4O3WA 1E54A 3AAAA 4GHBA 2R89A 3DWNA 3SY7A 3AA6A 4FSPA 4LSIA 1QJPA 4G76A 5E79O 4AYDC 4KR8A 4RL9A 4F4BA 5G3AA 3NJTA 3BRZA 1QJ8A 4N75A 4FRTA 3DWOX 2MNHA 2Y7SA 1T16A 3POXA 3VY9X 3POUA 3TZGA 4O49A 4O3YA 2QTKA 2XE1A 4KR4A 1MPFA 2W81C 2R4PA 2XTRA 3O0EA 5H2FO 1BH3A 3AAAB 3K19A 2R8AA 3PF1A 3A2SX 5TISO 3RBHA 4E1TA 2XG6A 1ZHYA 2R4OA 5DL5A 5D5DA 3AAEB 3HWBA 4RJXA 3T0SA 5ADXL 3LK41 2AXTO 1PRNA 3VE2A 4RJWA 4AKRB 4C00A 3T20A 2W80C 4GCQA 3SY9A 2K4TA 4FQEA 4K3BA 2ODJA 4PUXA 5DL6A 3QRAA 4QQ1A 5KAIO 3PORA 1HXXA 2N2LA 1OPFA 2PORA 3DA3A 4AYMC 3PGUA 5AFUL 1GFNA 1YS5A 2MHLA 2WJRA 3SZVA 2F1TA 5G26A 2R88A 4AFKA 2M06A 1GFOA 3T24A 3PRNA 2JQYA 4B61A 1MM4A 2O4VA 4XNKA 4C69X 3UU2A 4GCSA 3LK3A 2J4UP 4N58A 6PRNA 2KZ7B 3LK2A 4FT6A 4AUIA 2Y0KA 3AA7B 2IWVA
chains in the Genus database with same CATH topology
4AKMA 5DL8A 2XE5A 2KXPA 3AA6B 3JTYA 4LSFA 3HOLA 2N2MA 3HW9A 4XNLA 4D64A 4N59A 1BXWA 1HXUA 1HXTA 4O3XB 2GE4A 4AKRA 3SYSA 5PRNA 4JCHA 2XMXA 5EE2A 1Q9GA 2X27X 4LSHA 1IZNB 3VZUX 3AA0B 3WI4A 1GFMA 2ERVA 2JMMA 4FMSA 3VZWX 2KDYA 4FSOA 4AYID 4FESA 2K0LA 1QJ9A 2XE3A 3AA1B 1BT9A 2Y0HA 1ZHZA 2LHFA 3SYBA 4LSEA 3POQA 1GFQA 4Z3TA 1G90A 5ADXK 3FYXA 4O4UA 5FVNA 3VZTX 4U9CA 2FGRA 4E1SA 2OMFA 3KVDD 7PRNA 2J1NA 4AYEC 3AA7A 3V8UA 2PRNA 2F1VA 3AAEA 3HOEA 4RLBA 8PRNA 1THQA 4FRXA 4KRAA 5AFUK 4RLCA 1GFPA 1PHOA 4GCPA 2Y0LA 3PQSA 2XTQA 3LK3B 4BUMX 3PQUA 2YNKA 4FZMA 3LK2B 1OSMA 4JFBA 5JDPA 1ORMA 4AZLA 5DL7A 4FZLA 2Y2XA 2XE2A 3EMNX 3UAQA 5GV0A 1MM5A 1IZNA 3VY8X 4D65A 3AA0A 2KXPB 3LK42 4O3ZA 3UPGA 1Q9FA 1ZHXA 3WI5A 2FGQX 3QRCA 2KC0A 2ZFGA 4FZNA 1H6S1 4GF4A 4O4XA 5T5FA 3SZDA 2LFUA 2M07A 3AA1A 4AYNA 2ZLDA 4FOZA 4D5UA 2YPVA 4FUVA 3DA4A 1ZHWA 1P4TA 2KZ7A 3VE1A 5IYUA 3NSGA 1ZHTA 3G7GA 3C5OA 4G75A 3GP6A 4O3WA 1E54A 3AAAA 4GHBA 3SY7A 3AA6A 4FSPA 4LSIA 1QJPA 4G76A 4AYDC 4KR8A 4RL9A 4F4BA 1QJ8A 4FRTA 2MNHA 2Y7SA 3POXA 3VY9X 3POUA 3TZGA 4O49A 4O3YA 2QTKA 2XE1A 4KR4A 1MPFA 2W81C 2XTRA 3O0EA 1BH3A 3K19A 3A2SX 3RBHA 4E1TA 2XG6A 1ZHYA 5DL5A 5D5DA 3AAEB 3HWBA 4RJXA 3T0SA 5ADXL 3LK41 1PRNA 3VE2A 4RJWA 4AKRB 3T20A 2W80C 4GCQA 3SY9A 2K4TA 4PUXA 2ODJA 5DL6A 3QRAA 4QQ1A 3PORA 1HXXA 2N2LA 1OPFA 2PORA 3DA3A 4AYMC 5AFUL 1GFNA 1YS5A 2MHLA 3SZVA 2F1TA 5G26A 4AFKA 2M06A 1GFOA 3T24A 3PRNA 4B61A 1MM4A 2O4VA 4XNKA 4C69X 3UU2A 4GCSA 3LK3A 2J4UP 4N58A 6PRNA 2KZ7B 3LK2A 4FT6A 4AUIA 2Y0KA 3AA7B 3AAAB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DL8 A;  2XE5 A;  3JTY A;  4LSF A;  3HW9 A;  4D64 A;  1HXU A;  1HXT A;  3SYS A;  5PRN A;  4LSH A;  3VZU X;  3WI4 A;  1GFM A;  4FMS A;  3VZW X;  4FSO A;  2XE3 A;  1BT9 A;  2Y0H A;  3SYB A;  4LSE A;  3POQ A;  1GFQ A;  5FVN A;  3FYX A;  3VZT X;  2FGR A;  2OMF A;  7PRN A;  2J1N A;  2PRN A;  8PRN A;  4FRX A;  1GFP A;  1PHO A;  4GCP A;  2Y0L A;  4BUM X;  1OSM A;  4JFB A;  5JDP A;  5DL7 A;  2Y2X A;  2XE2 A;  3EMN X;  3VY8 X;  4D65 A;  3UPG A;  3WI5 A;  4C69 X;  2FGQ X;  2ZFG A;  1H6S 1;  3SZD A;  2ZLD A;  4FOZ A;  4D5U A;  3NSG A;  1E54 A;  3SY7 A;  4FSP A;  4LSI A;  4KR8 A;  4FRT A;  3POX A;  3VY9 X;  3POU A;  2QTK A;  2XE1 A;  4KR4 A;  1MPF A;  3O0E A;  1BH3 A;  3K19 A;  3A2S X;  2XG6 A;  5DL5 A;  4RJX A;  3HWB A;  3T0S A;  1PRN A;  4RJW A;  3T20 A;  4GCQ A;  3SY9 A;  2K4T A;  2ODJ A;  5DL6 A;  3POR A;  1HXX A;  1OPF A;  2POR A;  1GFN A;  3SZV A;  1GFO A;  3T24 A;  3PRN A;  2O4V A;  3UU2 A;  4GCS A;  2J4U P;  6PRN A;  4FT6 A;  4AUI A;  2Y0K A;  4KRA A; 
#chains in the Genus database with same CATH topology
 4AKM A;  3BRY A;  5DL8 A;  4K3C A;  2XE5 A;  4C4V A;  5G39 A;  5GTH O;  2KXP A;  3AA6 B;  1S5L O;  3JTY A;  4LSF A;  3HOL A;  2N2M A;  3HW9 A;  4XNL A;  4D64 A;  4N59 A;  1BXW A;  1HXU A;  1HXT A;  4O3X B;  2GE4 A;  4AKR A;  5B5E O;  3SYS A;  5PRN A;  4JCH A;  2IWW A;  2XMX A;  5G38 A;  5EE2 A;  1Q9G A;  2X27 X;  4LSH A;  1IZN B;  3VZU X;  3AA0 B;  3WI4 A;  1GFM A;  2ERV A;  2JMM A;  4FMS A;  3VZW X;  2KDY A;  4FSO A;  4AYI D;  3DZM A;  3A0H O;  4FES A;  4PR7 A;  4UB8 O;  3BS0 A;  2K0L A;  1QJ9 A;  2XE3 A;  3AA1 B;  1BT9 A;  2Y0H A;  4UB6 O;  5GTI O;  4CTD A;  1ZHZ A;  2LHF A;  3SYB A;  4LSE A;  3PGS A;  1GFQ A;  3POQ A;  4Z3T A;  5ADX K;  1G90 A;  3FYX A;  4O4U A;  5FVN A;  1T1L A;  3VZT X;  4U9C A;  2FGR A;  4N74 A;  4E1S A;  2OMF A;  3KVD D;  7PRN A;  2J1N A;  4AYE C;  3AA7 A;  3KZI O;  3V8U A;  4PJ0 O;  2PRN A;  2F1V A;  3AAE A;  3JCU O;  2F1C X;  2X9K A;  3HOE A;  4RLB A;  8PRN A;  1THQ A;  4FRX A;  4KRA A;  5AFU K;  2WJQ A;  1GFP A;  4RLC A;  1PHO A;  4GCP A;  2Y0L A;  3PQS A;  2XTQ A;  3LK3 B;  5GV0 A;  4BUM X;  3PQU A;  2YNK A;  4FZM A;  3LK2 B;  1OSM A;  4JFB A;  5JDP A;  1ORM A;  4AZL A;  3WU2 O;  4IL6 O;  4FZL A;  5DL7 A;  2Y2X A;  2XE2 A;  3EMN X;  3UAQ A;  5B66 O;  1MM5 A;  1IZN A;  3A0B O;  3VY8 X;  4C4V B;  2R4N A;  3AA0 A;  2KXP B;  3LK4 2;  4O3Z A;  3UPG A;  1Q9F A;  1ZHX A;  3WI5 A;  2FGQ X;  3QRC A;  2KC0 A;  2ZFG A;  4FZN A;  1H6S 1;  4GF4 A;  4O4X A;  5T5F A;  3SZD A;  2LFU A;  3PGR A;  2WVP A;  5KAF O;  2M07 A;  3AA1 A;  4AYN A;  2ZLD A;  4D65 A;  4FOZ A;  2R4L A;  4D5U A;  2YPV A;  4FUV A;  3DA4 A;  1ZHW A;  1P4T A;  2KZ7 A;  3VE1 A;  5IYU A;  3NSG A;  1ZHT A;  3G7G A;  3C5O A;  4G75 A;  3GP6 A;  4O3W A;  1E54 A;  3AAA A;  4GHB A;  2R89 A;  3DWN A;  3SY7 A;  3AA6 A;  4FSP A;  4LSI A;  1QJP A;  4G76 A;  5E79 O;  4AYD C;  4KR8 A;  4RL9 A;  4F4B A;  5G3A A;  3NJT A;  3BRZ A;  1QJ8 A;  4N75 A;  4FRT A;  3DWO X;  2MNH A;  2Y7S A;  1T16 A;  3POX A;  3VY9 X;  3POU A;  3TZG A;  4O49 A;  4O3Y A;  2QTK A;  2XE1 A;  4KR4 A;  1MPF A;  2W81 C;  2R4P A;  2XTR A;  3O0E A;  5H2F O;  1BH3 A;  3AAA B;  3K19 A;  2R8A A;  3PF1 A;  3A2S X;  5TIS O;  3RBH A;  4E1T A;  2XG6 A;  1ZHY A;  2R4O A;  5DL5 A;  5D5D A;  3AAE B;  3HWB A;  4RJX A;  3T0S A;  5ADX L;  3LK4 1;  2AXT O;  1PRN A;  3VE2 A;  4RJW A;  4AKR B;  4C00 A;  3T20 A;  2W80 C;  4GCQ A;  3SY9 A;  2K4T A;  4FQE A;  4K3B A;  2ODJ A;  4PUX A;  5DL6 A;  3QRA A;  4QQ1 A;  5KAI O;  3POR A;  1HXX A;  2N2L A;  1OPF A;  2POR A;  3DA3 A;  4AYM C;  3PGU A;  5AFU L;  1GFN A;  1YS5 A;  2MHL A;  2WJR A;  3SZV A;  2F1T A;  5G26 A;  2R88 A;  4AFK A;  2M06 A;  1GFO A;  3T24 A;  3PRN A;  2JQY A;  4B61 A;  1MM4 A;  2O4V A;  4XNK A;  4C69 X;  3UU2 A;  4GCS A;  3LK3 A;  2J4U P;  4N58 A;  6PRN A;  2KZ7 B;  3LK2 A;  4FT6 A;  4AUI A;  2Y0K A;  3AA7 B;  2IWV A; 
#chains in the Genus database with same CATH homology
 4AKM A;  5DL8 A;  2XE5 A;  2KXP A;  3AA6 B;  3JTY A;  4LSF A;  3HOL A;  2N2M A;  3HW9 A;  4XNL A;  4D64 A;  4N59 A;  1BXW A;  1HXU A;  1HXT A;  4O3X B;  2GE4 A;  4AKR A;  3SYS A;  5PRN A;  4JCH A;  2XMX A;  5EE2 A;  1Q9G A;  2X27 X;  4LSH A;  1IZN B;  3VZU X;  3AA0 B;  3WI4 A;  1GFM A;  2ERV A;  2JMM A;  4FMS A;  3VZW X;  2KDY A;  4FSO A;  4AYI D;  4FES A;  2K0L A;  1QJ9 A;  2XE3 A;  3AA1 B;  1BT9 A;  2Y0H A;  1ZHZ A;  2LHF A;  3SYB A;  4LSE A;  3POQ A;  1GFQ A;  4Z3T A;  1G90 A;  5ADX K;  3FYX A;  4O4U A;  5FVN A;  3VZT X;  4U9C A;  2FGR A;  4E1S A;  2OMF A;  3KVD D;  7PRN A;  2J1N A;  4AYE C;  3AA7 A;  3V8U A;  2PRN A;  2F1V A;  3AAE A;  3HOE A;  4RLB A;  8PRN A;  1THQ A;  4FRX A;  4KRA A;  5AFU K;  4RLC A;  1GFP A;  1PHO A;  4GCP A;  2Y0L A;  3PQS A;  2XTQ A;  3LK3 B;  4BUM X;  3PQU A;  2YNK A;  4FZM A;  3LK2 B;  1OSM A;  4JFB A;  5JDP A;  1ORM A;  4AZL A;  5DL7 A;  4FZL A;  2Y2X A;  2XE2 A;  3EMN X;  3UAQ A;  5GV0 A;  1MM5 A;  1IZN A;  3VY8 X;  4D65 A;  3AA0 A;  2KXP B;  3LK4 2;  4O3Z A;  3UPG A;  1Q9F A;  1ZHX A;  3WI5 A;  2FGQ X;  3QRC A;  2KC0 A;  2ZFG A;  4FZN A;  1H6S 1;  4GF4 A;  4O4X A;  5T5F A;  3SZD A;  2LFU A;  2M07 A;  3AA1 A;  4AYN A;  2ZLD A;  4FOZ A;  4D5U A;  2YPV A;  4FUV A;  3DA4 A;  1ZHW A;  1P4T A;  2KZ7 A;  3VE1 A;  5IYU A;  3NSG A;  1ZHT A;  3G7G A;  3C5O A;  4G75 A;  3GP6 A;  4O3W A;  1E54 A;  3AAA A;  4GHB A;  3SY7 A;  3AA6 A;  4FSP A;  4LSI A;  1QJP A;  4G76 A;  4AYD C;  4KR8 A;  4RL9 A;  4F4B A;  1QJ8 A;  4FRT A;  2MNH A;  2Y7S A;  3POX A;  3VY9 X;  3POU A;  3TZG A;  4O49 A;  4O3Y A;  2QTK A;  2XE1 A;  4KR4 A;  1MPF A;  2W81 C;  2XTR A;  3O0E A;  1BH3 A;  3K19 A;  3A2S X;  3RBH A;  4E1T A;  2XG6 A;  1ZHY A;  5DL5 A;  5D5D A;  3AAE B;  3HWB A;  4RJX A;  3T0S A;  5ADX L;  3LK4 1;  1PRN A;  3VE2 A;  4RJW A;  4AKR B;  3T20 A;  2W80 C;  4GCQ A;  3SY9 A;  2K4T A;  4PUX A;  2ODJ A;  5DL6 A;  3QRA A;  4QQ1 A;  3POR A;  1HXX A;  2N2L A;  1OPF A;  2POR A;  3DA3 A;  4AYM C;  5AFU L;  1GFN A;  1YS5 A;  2MHL A;  3SZV A;  2F1T A;  5G26 A;  4AFK A;  2M06 A;  1GFO A;  3T24 A;  3PRN A;  4B61 A;  1MM4 A;  2O4V A;  4XNK A;  4C69 X;  3UU2 A;  4GCS A;  3LK3 A;  2J4U P;  4N58 A;  6PRN A;  2KZ7 B;  3LK2 A;  4FT6 A;  4AUI A;  2Y0K A;  3AA7 B;  3AAA B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...