3T39A

Crystal structure of the complex of camel peptidoglycan recognition protein(cpgrp-s) with a mycobacterium metabolite shikimate at 2.7 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
171
structure length
171
Chain Sequence
EDPPACGSIVPRREWRALASECRERLTRPVRYVVVSHTAGSHCDTPASCAQQAQNVQSYHVRNLGWCDVGYNFLIGEDGLVYEGRGWNIKGAHAGPTWNPISIGISFMGNYMNRVPPPRALRAAQNLLACGVALGALRSNYEVKGHRDVQPTLSPGDRLYEIIQTWSHYRA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Peptidoglycan recognition protein 1
publication title Crystal structure of the complex of peptidoglycan recognition protein-short (CPGRP-S) with a mycobacterium metabolite shikimate at 2.7 A resolution
rcsb
total genus 54
structure length 171
sequence length 171
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-07-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01510 Amidase_2 N-acetylmuramoyl-L-alanine amidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.80.10 Alpha Beta 3-Layer(aba) Sandwich Lysozyme-like Peptidoglycan recognition protein-like 3t39A00
1AROL 3CORA 3QJ1A 3NW3A 4BXEA 1SK4A 5CTVA 3CXAA 4BPAA 1YCKA 2WKXA 3O4KA 2R90A 5E0AA 3D2ZA 1Z6IA 2XZ8A 4Q9EA 3T39A 3HMBA 2EAXA 3QV4A 4IVVA 3TRUA 3RT4A 4Q8SA 1LBAA 4X36A 1YB0A 4KNLA 4OPPA 4KNKA 3CG9A 1OHTA 3UILA 2APHA 1J3GA 2AR3A 2EAVA 2Y2CA 2L47A 2F2LA 2BH7A 1TWQA 4OLSA 2RKQA 4BXDA 2CB3A 2R2KA 2Z9NA 2Y2EA 3T2VA 4BJ4A 3QS0A 3OGXA 5DWFA 4GF9A 3USXA 1SXRA 1SK3A 4Z8IA 2Y28A 3UMQA 4FNNA 1S2JA 4ZXMA 3LATA 3UMLA 4ORVA 3NNOA 2Y2DA 5E0BA 3EP1A 3C2XA 4BXJA 4OUGA 3NG4A 2XZ4A 3D2YA 3RDRA 4BOLA 2F2LX 2Y2BA
chains in the Genus database with same CATH superfamily
1AROL 3CORA 3QJ1A 3NW3A 4BXEA 1SK4A 5CTVA 3CXAA 4BPAA 1YCKA 2WKXA 3O4KA 2R90A 5E0AA 3D2ZA 1Z6IA 2XZ8A 4Q9EA 3T39A 3HMBA 2EAXA 3QV4A 4IVVA 3TRUA 3RT4A 4Q8SA 1LBAA 4X36A 1YB0A 4KNLA 4OPPA 4KNKA 3CG9A 1OHTA 3UILA 2APHA 1J3GA 2AR3A 2EAVA 2Y2CA 2L47A 2F2LA 2BH7A 1TWQA 4OLSA 2RKQA 4BXDA 2CB3A 2R2KA 2Z9NA 2Y2EA 3T2VA 4BJ4A 3QS0A 3OGXA 5DWFA 4GF9A 3USXA 1SXRA 1SK3A 4Z8IA 2Y28A 3UMQA 4FNNA 1S2JA 4ZXMA 3LATA 3UMLA 4ORVA 3NNOA 2Y2DA 5E0BA 3EP1A 3C2XA 4BXJA 4OUGA 3NG4A 2XZ4A 3D2YA 3RDRA 4BOLA 2F2LX 2Y2BA
chains in the Genus database with same CATH topology
1AROL 3CORA 3QJ1A 3NW3A 4BXEA 1SK4A 5CTVA 3CXAA 4BPAA 1YCKA 2WKXA 3O4KA 2R90A 5E0AA 3D2ZA 1Z6IA 2XZ8A 4Q9EA 3T39A 3HMBA 2EAXA 3QV4A 4IVVA 3TRUA 3RT4A 4Q8SA 1LBAA 4X36A 1YB0A 4KNLA 4OPPA 4KNKA 3CG9A 1OHTA 3UILA 2APHA 1J3GA 2AR3A 2EAVA 2Y2CA 2L47A 2F2LA 2BH7A 1TWQA 4OLSA 2RKQA 4BXDA 2CB3A 2R2KA 2Z9NA 2Y2EA 3T2VA 4BJ4A 3QS0A 3OGXA 5DWFA 4GF9A 3USXA 1SXRA 1SK3A 4Z8IA 2Y28A 3UMQA 4FNNA 1S2JA 4ZXMA 3LATA 3UMLA 4ORVA 3NNOA 2Y2DA 5E0BA 3EP1A 3C2XA 4BXJA 4OUGA 3NG4A 2XZ4A 3D2YA 3RDRA 4BOLA 2F2LX 2Y2BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1ARO L;  3COR A;  3QJ1 A;  3NW3 A;  4BXE A;  1SK4 A;  5CTV A;  3CXA A;  4BPA A;  1YCK A;  2WKX A;  3O4K A;  2R90 A;  5E0A A;  3D2Z A;  1Z6I A;  2XZ8 A;  4Q9E A;  3T39 A;  3HMB A;  2EAX A;  3QV4 A;  4IVV A;  3TRU A;  3RT4 A;  4Q8S A;  1LBA A;  4X36 A;  1YB0 A;  4KNL A;  4OPP A;  4KNK A;  3CG9 A;  1OHT A;  3UIL A;  2APH A;  1J3G A;  2AR3 A;  2EAV A;  2Y2C A;  2L47 A;  2F2L A;  2BH7 A;  1TWQ A;  4OLS A;  2RKQ A;  4BXD A;  2CB3 A;  2R2K A;  2Z9N A;  2Y2E A;  3T2V A;  4BJ4 A;  3QS0 A;  3OGX A;  5DWF A;  4GF9 A;  3USX A;  1SXR A;  1SK3 A;  4Z8I A;  2Y28 A;  3UMQ A;  4FNN A;  1S2J A;  4ZXM A;  3LAT A;  3UML A;  4ORV A;  3NNO A;  2Y2D A;  5E0B A;  3EP1 A;  3C2X A;  4BXJ A;  4OUG A;  3NG4 A;  2XZ4 A;  3D2Y A;  3RDR A;  4BOL A;  2F2L X;  2Y2B A; 
#chains in the Genus database with same CATH topology
 1ARO L;  3COR A;  3QJ1 A;  3NW3 A;  4BXE A;  1SK4 A;  5CTV A;  3CXA A;  4BPA A;  1YCK A;  2WKX A;  3O4K A;  2R90 A;  5E0A A;  3D2Z A;  1Z6I A;  2XZ8 A;  4Q9E A;  3T39 A;  3HMB A;  2EAX A;  3QV4 A;  4IVV A;  3TRU A;  3RT4 A;  4Q8S A;  1LBA A;  4X36 A;  1YB0 A;  4KNL A;  4OPP A;  4KNK A;  3CG9 A;  1OHT A;  3UIL A;  2APH A;  1J3G A;  2AR3 A;  2EAV A;  2Y2C A;  2L47 A;  2F2L A;  2BH7 A;  1TWQ A;  4OLS A;  2RKQ A;  4BXD A;  2CB3 A;  2R2K A;  2Z9N A;  2Y2E A;  3T2V A;  4BJ4 A;  3QS0 A;  3OGX A;  5DWF A;  4GF9 A;  3USX A;  1SXR A;  1SK3 A;  4Z8I A;  2Y28 A;  3UMQ A;  4FNN A;  1S2J A;  4ZXM A;  3LAT A;  3UML A;  4ORV A;  3NNO A;  2Y2D A;  5E0B A;  3EP1 A;  3C2X A;  4BXJ A;  4OUG A;  3NG4 A;  2XZ4 A;  3D2Y A;  3RDR A;  4BOL A;  2F2L X;  2Y2B A; 
#chains in the Genus database with same CATH homology
 1ARO L;  3COR A;  3QJ1 A;  3NW3 A;  4BXE A;  1SK4 A;  5CTV A;  3CXA A;  4BPA A;  1YCK A;  2WKX A;  3O4K A;  2R90 A;  5E0A A;  3D2Z A;  1Z6I A;  2XZ8 A;  4Q9E A;  3T39 A;  3HMB A;  2EAX A;  3QV4 A;  4IVV A;  3TRU A;  3RT4 A;  4Q8S A;  1LBA A;  4X36 A;  1YB0 A;  4KNL A;  4OPP A;  4KNK A;  3CG9 A;  1OHT A;  3UIL A;  2APH A;  1J3G A;  2AR3 A;  2EAV A;  2Y2C A;  2L47 A;  2F2L A;  2BH7 A;  1TWQ A;  4OLS A;  2RKQ A;  4BXD A;  2CB3 A;  2R2K A;  2Z9N A;  2Y2E A;  3T2V A;  4BJ4 A;  3QS0 A;  3OGX A;  5DWF A;  4GF9 A;  3USX A;  1SXR A;  1SK3 A;  4Z8I A;  2Y28 A;  3UMQ A;  4FNN A;  1S2J A;  4ZXM A;  3LAT A;  3UML A;  4ORV A;  3NNO A;  2Y2D A;  5E0B A;  3EP1 A;  3C2X A;  4BXJ A;  4OUG A;  3NG4 A;  2XZ4 A;  3D2Y A;  3RDR A;  4BOL A;  2F2L X;  2Y2B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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