3T4NC

Structure of the regulatory fragment of saccharomyces cerevisiae ampk in complex with adp
Total Genus 94
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
94
sequence length
315
structure length
311
Chain Sequence
SQEKVSIEQQLAVESIRKFLNSKTSYDVLPVSYRLIVLDTSLLVKKSLNVLLQNSIVSAPLWDSKTSRFAGLLTTTDFINVIQYYFSNPDKFELVDKLQLDGLKDIERALGVTASIHPSRPLFEACLKMLESRSGRIPLIDQDEETHREIVVSVLTQYRILKFVALNCRETHFLKIPIGDLNIITQDNMKSCQMTTPVIDVIQMLTQGRVSSVPIIDENGYLINVYEAYDVLGLIKGGIYNDLSLSVGEALMRRSDDFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVDDVGRLVGVLTLSDILKYILLGS
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein binding
molecule keywords Carbon catabolite-derepressing protein kinase
publication title ADP Regulates SNF1, the Saccharomyces cerevisiae Homolog of AMP-Activated Protein Kinase.
pubmed doi rcsb
source organism Saccharomyces cerevisiae
total genus 94
structure length 311
sequence length 315
ec nomenclature
pdb deposition date 2011-07-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF00571 CBS CBS domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3t4nC02
3.10.580.10 Alpha Beta Roll CBS-domain CBS-domain 3t4nC01
2O16A 3I8NA 2YVZA 4L3VA 3OI8A 4GQVA 2OUXA 3PC2A 2NYCA 5K23C 2YZQA 4L28A 5MMZA 3GBYA 3KPDA 4P1OA 1PBJA 2QH1A 4IY3A 3KPCA 4GQYA 2PFIA 2RIFA 3LQNA 4IYSA 5K22B 2UV4A 2RIHA 3L31A 3FWSA 4FXSA 3L2BA 5K25C 4L27A 2EF7A 3ORGA 4O9KA 3OCOA 4P1GA 2QRDE 1O50A 4HG0A 3KH5A 3FHMA 3FNAA 2QREE 5K24C 3DDJA 2D4ZA 3LHHA 4IY2A 2YVXA 4UUUA 3SL7A 3HF7A 3LV9A 3LFZA 1XKFA 1YAVA 2OOXE 5LXQA 3TE5C 3K6EA 4ESYB 2P9MA 2QR1E 3FV6A 3PC4A 3OCMA 3FWRA 2YVYA 4FRYA 2OOYE 3PC3A 1Y5HA 2YZIA 2UV5A 2UV7A 3K2VA 5KS7A 2NYEA 4PCUA 5IIPA 4COOA 4IY4A 2ZY9A 4L0DA 2QLVC 3KPBA 3TDHC 4GQWA 4DQWA 3KXRA 2RC3A 2EMQA 1PVMA 4IY0A 3T4NC 2QRCE 4ESYA 2UV6A 4NOCA
chains in the Genus database with same CATH superfamily
2O16A 3I8NA 2YVZA 4L3VA 3OI8A 4GQVA 2OUXA 3PC2A 2NYCA 5K23C 2YZQA 4L28A 5MMZA 3GBYA 3KPDA 4P1OA 1PBJA 2QH1A 4IY3A 3KPCA 4GQYA 2PFIA 2RIFA 3LQNA 4IYSA 5K22B 2UV4A 2RIHA 3L31A 3FWSA 4FXSA 3L2BA 5K25C 4L27A 2EF7A 3ORGA 4O9KA 3OCOA 4P1GA 2QRDE 1O50A 4HG0A 3KH5A 3FHMA 3FNAA 2QREE 5K24C 3DDJA 2D4ZA 3LHHA 4IY2A 2YVXA 4UUUA 3SL7A 3HF7A 3LV9A 3LFZA 1XKFA 1YAVA 2OOXE 5LXQA 3TE5C 3K6EA 4ESYB 2P9MA 2QR1E 3FV6A 3PC4A 3OCMA 3FWRA 2YVYA 4FRYA 2OOYE 3PC3A 1Y5HA 2YZIA 2UV5A 2UV7A 3K2VA 2JA3A 5KS7A 2NYEA 4PCUA 5IIPA 2J9LA 4COOA 4IY4A 2ZY9A 4L0DA 2QLVC 3KPBA 3TDHC 4GQWA 4DQWA 3KXRA 2RC3A 2EMQA 1PVMA 4IY0A 3T4NC 2QRCE 4ESYA 2UV6A 4NOCA
chains in the Genus database with same CATH topology
2O16A 3I8NA 2YVZA 4L3VA 3OI8A 4GQVA 2OUXA 3PC2A 2NYCA 5K23C 2YZQA 4L28A 5MMZA 3GBYA 3KPDA 4P1OA 1PBJA 2QH1A 4IY3A 3KPCA 4GQYA 2PFIA 2RIFA 3LQNA 4IYSA 5K22B 2UV4A 2RIHA 3L31A 3FWSA 4FXSA 3L2BA 5K25C 4L27A 2EF7A 3ORGA 4O9KA 3OCOA 4P1GA 2QRDE 1O50A 4HG0A 3KH5A 3FHMA 3FNAA 2QREE 5K24C 3DDJA 2D4ZA 3LHHA 4IY2A 2YVXA 4UUUA 3SL7A 3HF7A 3LV9A 3LFZA 1XKFA 1YAVA 2OOXE 5LXQA 3TE5C 3K6EA 4ESYB 2P9MA 2QR1E 3FV6A 3PC4A 3OCMA 3FWRA 2YVYA 4FRYA 2OOYE 3PC3A 1Y5HA 2YZIA 2UV5A 2UV7A 3K2VA 2JA3A 5KS7A 2NYEA 4PCUA 5IIPA 2J9LA 4COOA 4IY4A 2ZY9A 4L0DA 2QLVC 3KPBA 3TDHC 4GQWA 4DQWA 3KXRA 2RC3A 2EMQA 1PVMA 4IY0A 3T4NC 2QRCE 4ESYA 2UV6A 4NOCA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2O16 A;  3I8N A;  2YVZ A;  4L3V A;  3OI8 A;  4GQV A;  2OUX A;  3PC2 A;  2NYC A;  5K23 C;  2YZQ A;  4L28 A;  5MMZ A;  3GBY A;  3KPD A;  4P1O A;  1PBJ A;  2QH1 A;  4IY3 A;  3KPC A;  4GQY A;  2PFI A;  2RIF A;  3LQN A;  4IYS A;  5K22 B;  2UV4 A;  2RIH A;  3L31 A;  3FWS A;  4FXS A;  3L2B A;  5K25 C;  4L27 A;  2EF7 A;  3ORG A;  4O9K A;  3OCO A;  4P1G A;  2QRD E;  1O50 A;  4HG0 A;  3KH5 A;  3FHM A;  3FNA A;  2QRE E;  5K24 C;  3DDJ A;  2D4Z A;  3LHH A;  4IY2 A;  2YVX A;  4UUU A;  3SL7 A;  3HF7 A;  3LV9 A;  3LFZ A;  1XKF A;  1YAV A;  2OOX E;  5LXQ A;  3TE5 C;  3K6E A;  4ESY B;  2P9M A;  2QR1 E;  3FV6 A;  3PC4 A;  3OCM A;  3FWR A;  2YVY A;  4FRY A;  2OOY E;  3PC3 A;  1Y5H A;  2YZI A;  2UV5 A;  2UV7 A;  3K2V A;  5KS7 A;  2NYE A;  4PCU A;  5IIP A;  4COO A;  4IY4 A;  2ZY9 A;  4L0D A;  2QLV C;  3KPB A;  3TDH C;  4GQW A;  4DQW A;  3KXR A;  2RC3 A;  2EMQ A;  1PVM A;  4IY0 A;  3T4N C;  2QRC E;  4ESY A;  2UV6 A;  4NOC A; 
#chains in the Genus database with same CATH topology
 2O16 A;  3I8N A;  2YVZ A;  4L3V A;  3OI8 A;  4GQV A;  2OUX A;  3PC2 A;  2NYC A;  5K23 C;  2YZQ A;  4L28 A;  5MMZ A;  3GBY A;  3KPD A;  4P1O A;  1PBJ A;  2QH1 A;  4IY3 A;  3KPC A;  4GQY A;  2PFI A;  2RIF A;  3LQN A;  4IYS A;  5K22 B;  2UV4 A;  2RIH A;  3L31 A;  3FWS A;  4FXS A;  3L2B A;  5K25 C;  4L27 A;  2EF7 A;  3ORG A;  4O9K A;  3OCO A;  4P1G A;  2QRD E;  1O50 A;  4HG0 A;  3KH5 A;  3FHM A;  3FNA A;  2QRE E;  5K24 C;  3DDJ A;  2D4Z A;  3LHH A;  4IY2 A;  2YVX A;  4UUU A;  3SL7 A;  3HF7 A;  3LV9 A;  3LFZ A;  1XKF A;  1YAV A;  2OOX E;  5LXQ A;  3TE5 C;  3K6E A;  4ESY B;  2P9M A;  2QR1 E;  3FV6 A;  3PC4 A;  3OCM A;  3FWR A;  2YVY A;  4FRY A;  2OOY E;  3PC3 A;  1Y5H A;  2YZI A;  2UV5 A;  2UV7 A;  3K2V A;  2JA3 A;  5KS7 A;  2NYE A;  4PCU A;  5IIP A;  2J9L A;  4COO A;  4IY4 A;  2ZY9 A;  4L0D A;  2QLV C;  3KPB A;  3TDH C;  4GQW A;  4DQW A;  3KXR A;  2RC3 A;  2EMQ A;  1PVM A;  4IY0 A;  3T4N C;  2QRC E;  4ESY A;  2UV6 A;  4NOC A; 
#chains in the Genus database with same CATH homology
 2O16 A;  3I8N A;  2YVZ A;  4L3V A;  3OI8 A;  4GQV A;  2OUX A;  3PC2 A;  2NYC A;  5K23 C;  2YZQ A;  4L28 A;  5MMZ A;  3GBY A;  3KPD A;  4P1O A;  1PBJ A;  2QH1 A;  4IY3 A;  3KPC A;  4GQY A;  2PFI A;  2RIF A;  3LQN A;  4IYS A;  5K22 B;  2UV4 A;  2RIH A;  3L31 A;  3FWS A;  4FXS A;  3L2B A;  5K25 C;  4L27 A;  2EF7 A;  3ORG A;  4O9K A;  3OCO A;  4P1G A;  2QRD E;  1O50 A;  4HG0 A;  3KH5 A;  3FHM A;  3FNA A;  2QRE E;  5K24 C;  3DDJ A;  2D4Z A;  3LHH A;  4IY2 A;  2YVX A;  4UUU A;  3SL7 A;  3HF7 A;  3LV9 A;  3LFZ A;  1XKF A;  1YAV A;  2OOX E;  5LXQ A;  3TE5 C;  3K6E A;  4ESY B;  2P9M A;  2QR1 E;  3FV6 A;  3PC4 A;  3OCM A;  3FWR A;  2YVY A;  4FRY A;  2OOY E;  3PC3 A;  1Y5H A;  2YZI A;  2UV5 A;  2UV7 A;  3K2V A;  2JA3 A;  5KS7 A;  2NYE A;  4PCU A;  5IIP A;  2J9L A;  4COO A;  4IY4 A;  2ZY9 A;  4L0D A;  2QLV C;  3KPB A;  3TDH C;  4GQW A;  4DQW A;  3KXR A;  2RC3 A;  2EMQ A;  1PVM A;  4IY0 A;  3T4N C;  2QRC E;  4ESY A;  2UV6 A;  4NOC A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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