3TCQA

Crystal structure of matrix protein vp40 from ebola virus sudan
Total Genus 49
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
49
sequence length
265
structure length
239
Chain Sequence
MDTPSNSMRPVADDNIDHTSHTPNGVASAFILEATVNVISGPKVLMKQIPIWLPLGIADQKTYSFDSTTAAIMLASYTITHFGKANNPLVRVNRLGQGIPDHPLRLLRMGNQAFLQEFVLPPVQLPQYFTFDLTALKLVTQPLPAATWTDRPGLSFHPKLRPVLLPGTAPDKIQTIVNLMQDFKIVPIDPAKSIIGIEVPELLVHKLTGKKMSQKNGQPIIPVLLPKYIGPGDLTMVIT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Viral protein
molecule keywords Matrix protein VP40
publication title High-resolution Crystal Structure of Dimeric VP40 From Sudan ebolavirus.
pubmed doi rcsb
source organism Sudan ebolavirus
total genus 49
structure length 239
sequence length 265
ec nomenclature
pdb deposition date 2011-08-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07447 VP40 Matrix protein VP40
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.510.10 Mainly Beta Sandwich EV matrix protein fold EV matrix protein 3tcqA02
2.70.20.20 Mainly Beta Distorted Sandwich Topoisomerase I; domain 3 Topoisomerase I; domain 3 3tcqA01
3TCQA 1H2CA 4LD8A 1ES6A 5B0VA 1H2DA 4LDMA 4LDBA 4LDDA
chains in the Genus database with same CATH superfamily
1CYYA 4HITA 2O5CA 4G1GA 2O5EA 1ES6A 3F1JA 1CY2A 4CGYA 4LDBA 4LDDA 4D4TA 1I7DA 1ECLA 4LDMA 1CY4A 3TCQA 4G1OA 2O19A 3PX7A 1H2CA 4DDTA 1MW9X 2O54A 4RULA 3PWTA 4G1LA 4HI5A 2VQPA 2GAIA 4HIYA 4DDWA 5D5HA 1GL9B 1CY8A 1CY1A 1CY9A 2YKDA 4V23A 4DDVA 4HIWA 4CHTA 1MW8X 4LP7A 1GKUB 1CY6A 4LD8A 1CY0A 5B0VA 4HI6A 1H2DA 1CY7A 4DDUA 2GAJA 1D6MA 2O59A 4HIUA
chains in the Genus database with same CATH topology
4HITA 4G1GA 1ES6A 3F1JA 4LDBA 4LDDA 4D4TA 4G1OA 3TCQA 1H2CA 4G1LA 4HI5A 2VQPA 4HIYA 2YKDA 4V23A 4HIWA 4LP7A 4LD8A 5B0VA 1H2DA 4HI6A 4LDMA 4HIUA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TCQ A;  1H2C A;  4LD8 A;  1ES6 A;  5B0V A;  1H2D A;  4LDM A;  4LDB A;  4LDD A; 
#chains in the Genus database with same CATH topology
 1CYY A;  4HIT A;  2O5C A;  4G1G A;  2O5E A;  1ES6 A;  3F1J A;  1CY2 A;  4CGY A;  4LDB A;  4LDD A;  4D4T A;  1I7D A;  1ECL A;  4LDM A;  1CY4 A;  3TCQ A;  4G1O A;  2O19 A;  3PX7 A;  1H2C A;  4DDT A;  1MW9 X;  2O54 A;  4RUL A;  3PWT A;  4G1L A;  4HI5 A;  2VQP A;  2GAI A;  4HIY A;  4DDW A;  5D5H A;  1GL9 B;  1CY8 A;  1CY1 A;  1CY9 A;  2YKD A;  4V23 A;  4DDV A;  4HIW A;  4CHT A;  1MW8 X;  4LP7 A;  1GKU B;  1CY6 A;  4LD8 A;  1CY0 A;  5B0V A;  4HI6 A;  1H2D A;  1CY7 A;  4DDU A;  2GAJ A;  1D6M A;  2O59 A;  4HIU A; 
#chains in the Genus database with same CATH homology
 4HIT A;  4G1G A;  1ES6 A;  3F1J A;  4LDB A;  4LDD A;  4D4T A;  4G1O A;  3TCQ A;  1H2C A;  4G1L A;  4HI5 A;  2VQP A;  4HIY A;  2YKD A;  4V23 A;  4HIW A;  4LP7 A;  4LD8 A;  5B0V A;  1H2D A;  4HI6 A;  4LDM A;  4HIU A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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