3TEKA

Thermodbp: a non-canonical single-stranded dna binding protein with a novel structure and mechanism
Total Genus 40
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
40
sequence length
139
structure length
139
Chain Sequence
RGEVRSELITKGEKKLVLIRWNTGKTSAGRLFGRYGPGGRPEFFKLLFGAVAGSLREQFGPDGENIFNRIRDSEKFRETSRELFDGLKKWFFEEAVPRYNLERGDIFMISTELVLDPDTGELLWNRDKTQLIYWIRSDR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein
molecule keywords ThermoDBP-single stranded DNA binding protein
publication title Displacement of the canonical single-stranded DNA-binding protein in the Thermoproteales.
pubmed doi rcsb
source organism Thermoproteus tenax
total genus 40
structure length 139
sequence length 139
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-08-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF18361 ssDBP_DBD Single stranded DNA-binding protein ss DNA binding domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.470.50 Alpha Beta 2-Layer Sandwich D-amino Acid Aminotransferase; Chain A, domain 1 D-amino Acid Aminotransferase; Chain A, domain 1 3tekA00
3TEKA
chains in the Genus database with same CATH superfamily
2DABA 1IOVA 1ULZA 5JQWA 3JSNA 3GIDA 5LXTF 2WYOA 2GQRA 4ME6A 5BWWA 4Q4DA 5DISC 1DV2A 5KX5F 5LYJF 3KREA 4PZ6A 3WWHA 3U54A 4DQNA 2YZGA 3G8DA 3BAAA 1CKOA 4CMDA 2COIA 3UYYA 3ETJA 4PZ8A 5I60A 5H80A 1PX2A 4CC6A 2QK4A 2NUAB 4WHXA 1GLVA 1GSOA 4FFNA 3WNZA 3K5IA 2HVRA 2VUGA 3E5NA 1I2KA 2VPQA 1A3GA 5I5YA 3ORQA 2VR1A 4ZQIA 4UFZA 4TVIA 4E4TA 1DV1A 2YL2A 4XX0B 1CQIB 1I1KA 4YJ3F 3N8DA 2HGSA 1B04A 3UZOA 5K2MA 2I80A 4LH6A 3G8CA 5I47A 1W93A 5D8DA 3ORRA 4NZNA 4C5CA 1E4EA 2ODTX 3DTFA 3SNOA 1KJIA 1I7NA 3DAAA 4O86A 3RFCA 2OWOA 4MV9A 3WO0A 3AX6A 2GQSA 4TM5A 1PK8A 5BWTA 4GLXA 1I1LA 3U9TA 5I5VA 4O2BF 3DTGA 3R5FA 1AUVA 1WRVA 3GLKA 3TW6A 3VOTA 4FGRA 1A0GA 3DF7A 1VKZA 3I12A 3R5HA 4CKEA 5J2TF 3VPCA 4O4LF 4C5AA 2Q2UA 1JKJB 2DZDA 4FU0A 5DGHA 1SCUB 2W6OA 4MV6A 2YWVA 4L1KA 4EGJA 1CE8A 1OBGA 4RZQA 2HHFA 2ZDGA 1CS0A 3BABA 2HVSA 1GGOA 4FFRA 1FVIA 1Z2OX 2R85A 1BNCA 2NU7B 4O83A 3QQMA 2DLNA 3TINA 4XYMB 1GSHA 3MWDA 2DAAA 5JVDF 2Q7DA 2J9GA 3TIGA 3VPBA 3T7AA 2R87A 2W6PA 3TQTA 3NBZB 4O4IF 3BA9A 2ZDQA 2W6NA 2OLSA 1EZ1A 2CFMA 2YRWA 1KJJA 3TY9A 1IYEA 4O4HF 1I1MA 1CQJB 4HN2A 3OUUA 3VPDA 1EKPA 3GJXB 1M0WA 2R86A 2YZLA 2EJ2A 2Q2TA 4ZI7F 3R23A 2Y4RA 1W96A 1JLLB 4TV9F 2YZMA 2YS6A 3R5XA 3K3PA 3LP8A 3HO8A 4UCRA 2R7LA 2C00A 4CKCA 3JSLA 2CZGA 1M0TA 5BWUA 2W71A 2FP4B 2GLTA 3T9CA 4TUYF 4XYLB 3BG5A 1KUTA 3PFFA 4Q4CA 5E25A 4CE5A 2V5AA 4O7RA 1AUXA 2R82A 1C30A 4HQ6A 1DGSA 1A9XA 3LQSA 4RCNA 2EJ0A 1KTAA 1P8LA 3NUAA 3KYHC 5J2UF 5C8YF 2Z02A 1CKNB 1VBGA 1JDBB 3N6RA 5GONF 3BA8A 3PN1A 5JVLA 3T54A 4WBNF 5I5WA 2ZDHA 1P16A 2HGXA 4FE2A 2VQDA 4IHJF 3V4SA 5HBRB 4IWYA 3RUPA 4CHIA 5BWXA 2EJ3A 2A1HA 3QFFA 3VNNA 5EZYF 3JRWA 4UUGA 3ETHA 4O7WA 4NZMA 3TY8A 4MA5A 4LH7A 2NU9B 3UQ8A 2X5RA 2YZNA 5D1OB 1EUDB 5D1OA 2COJA 2W6ZA 2I8CA 2YW2A 3AW8A 4MV4A 1VS0A 5BPHA 3SE7A 1WR2A 1XK5A 2DIKA 2I87A 4O7SA 2COGA 2ZGIA 4O7LA 4O7VA 3TW7A 2R7MA 1I7LA 1KEEA 1Z2NX 4DAAA 1IYDA 4JXUA 4O4JF 4YBZB 4O7TA 2CNUA 2W6QA 4HR7A 2HDKA 4QSHA 3T9FA 5JH7F 4IWXA 3T9BA 5I5UA 2V58A 2DWCA 5BWVA 1EKVA 3LULA 3OUZA 4HNTA 3T99A 3W1BA 1C3OA 1TAEA 3KAJA 2R84A 3JRXA 2Z04A 2HJWA 4FFOA 2ABJA 5CR5A 3BACA 2NU8B 4EFBA 3R9RA 3TEKA 2HG8A 1JDEA 2GPWA 2YS7A 2NU6B 3VMMA 4FFPA 3NC0B 4YJ2F 1GSAA 4I55F 4MA0A 4XZ3B 4IZOA 3JZIA 2V59A 4EG0A 1CKMA 1Z2PX 2FPGB 3JZ6A 2YRXA 3U9SA 4M0JA 3HB9A 3GB8B 2HGWA 1V9PA 3V4ZA 5CE8A 1OBDA 1XDNA 4C5BA 3W5OA 3U55A 5JQGF 1A48A 2PN1A 5CM0A 4EEQA 5DAAA 5LP6F 4O7ZA 5I5TA 5FNVF 5C1PA 4NYEA 3RR5A 1B6SA 1KBLA 1KC7A 1ET0A 1EUCB 4PZ7A 5LA6F 4EFEA 3TY5A 2XCLA 4MV8A 2XD4A 3RTXA 3MWEA 3HT5A 1CKNA 1M6VA 1KJ9A 4DRFA 5IYZF 1KJQA 4O7YA 4YAJB 3Q1KA 1DAAA 4O2AF 5FPRA 5CB4F 4MV1A 1KJ8A 3T9AA 4E6NA 3KALA 2FPPB 4UCVA 4GLWA 2FB9A 2SCUB 3MJFA 4UCOA 4FFLA 5CA1F 5DGIA 1EYZA 3UFXB 3JZFA 4O84A 3WO1A 4CMFA 4UCTA 4DLKA 4FFMA 2FPIB 4O82A 1TA8A 2W70A 1G2WA 2EIYA 5I5SA 4EQ5A 1KT8A 1E4EB 3WWIA 3HBLA 3W1GA 4CKBA 4HNVA 2QF7A 2X0SA 4O81A 4EGQA 3VA7A 4IIJF 4ZHQF 5CA0F 2CNQA 2PBZA 4MV7A 4TV8F 3RV4A 5BYBA 1UC9A 1UC8A 4DIMA 3NBYB 4NZOA 3LWBA 4YB8B 3T9EA 5BMVF 1ZAUA 2IP4A 3KAKA 4MV3A 1B6RA 3T9DA 2HVQA 2W6MA 1EHIA 3WWJA 3CEBA 5D1PA 4I50F 4O7NA 3Q2OA 5C1OA 3GDEA 4MAMA 5CAEB 3S24A 5KKNB 3U0GA 4I4TF 2HIVA 5FR9A 5BYAA 1T36A 2CNVA 2HIXA 4ZOLF 2R7NA 1A0IA 2PVPA 5FPOA 1X9NA 3QWUA 1BXRA 2HHFB 4M9UA 5K3WA 2YYAA 3UZBA 2R7KA 5BWRA 1IOWA 2QB5A 5HNEA 2GPSA 1I2LA 4HNUA 3SGIA 4CC5A 5BPFA 5DMXA 5LOVF 3CSWA 1VBHA 4UCSA 5KS8A 3L2PA 3RV3A 4PBCA 5I5XA 4K6NA 4Y8VB 1S68A 5HV6A 3K5HA 3TIIA 2P0AA 4YAKB 4UCUA 1DIKA 1EKFA
chains in the Genus database with same CATH topology
3HT5A 2DABA 2X5RA 2COJA 2HHFA 5BWWA 4Q4DA 1DAAA 3T9AA 3WWHA 4DQNA 3QQMA 4GLWA 2COGA 2ZGIA 2DAAA 3TW7A 4CMDA 2COIA 2Q7DA 3T7AA 4DAAA 3UYYA 5I60A 5DGIA 1IYDA 4JXUA 2HDKA 1IYEA 4CMFA 3T9FA 4WHXA 1I1MA 4IWXA 3T9BA 5I5UA 4HN2A 1G2WA 2EIYA 3VPDA 1EKPA 5BWVA 5I5SA 1KT8A 1EKVA 3LULA 3WWIA 3T99A 1I2KA 1A3GA 2EJ2A 4CKBA 5I5YA 2Y4RA 2ABJA 5CR5A 3BACA 4CKCA 5BYBA 1UC9A 5BWUA 1UC8A 1I1KA 3T9CA 4NZOA 3UZOA 5K2MA 3TEKA 3T9EA 5I47A 1ZAUA 2HG8A 3PFFA 4Q4CA 5E25A 3T9DA 4CE5A 3WWJA 4NZNA 3CEBA 2ODTX 3DTFA 3SNOA 3DAAA 3JZ6A 3LQSA 4RCNA 2EJ0A 1KTAA 3U0GA 4M0JA 4TM5A 5FR9A 5BWTA 2HGWA 5BYAA 5CE8A 1I1LA 5I5VA 3DTGA 2HHFB 5K3WA 3UZBA 1WRVA 3T54A 5BWRA 5I5WA 5CM0A 2HGXA 5DAAA 2QB5A 5HNEA 5I5TA 1I2LA 3SGIA 1A0GA 4IWYA 4CKEA 4CHIA 5BWXA 2EJ3A 2A1HA 3CSWA 1ET0A 5KS8A 4PBCA 5I5XA 4K6NA 4UUGA 5DGHA 4NZMA 4TVIA 1EKFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TEK A; 
#chains in the Genus database with same CATH topology
 2DAB A;  1IOV A;  1ULZ A;  5JQW A;  3JSN A;  3GID A;  5LXT F;  2WYO A;  2GQR A;  4ME6 A;  5BWW A;  4Q4D A;  5DIS C;  1DV2 A;  5KX5 F;  5LYJ F;  3KRE A;  4PZ6 A;  3WWH A;  3U54 A;  4DQN A;  2YZG A;  3G8D A;  3BAA A;  1CKO A;  4CMD A;  2COI A;  3UYY A;  3ETJ A;  4PZ8 A;  5I60 A;  5H80 A;  1PX2 A;  4CC6 A;  2QK4 A;  2NUA B;  4WHX A;  1GLV A;  1GSO A;  4FFN A;  3WNZ A;  3K5I A;  2HVR A;  2VUG A;  3E5N A;  1I2K A;  2VPQ A;  1A3G A;  5I5Y A;  3ORQ A;  2VR1 A;  4ZQI A;  4UFZ A;  4TVI A;  4E4T A;  1DV1 A;  2YL2 A;  4XX0 B;  1CQI B;  1I1K A;  4YJ3 F;  3N8D A;  2HGS A;  1B04 A;  3UZO A;  5K2M A;  2I80 A;  4LH6 A;  3G8C A;  5I47 A;  1W93 A;  5D8D A;  3ORR A;  4NZN A;  4C5C A;  1E4E A;  2ODT X;  3DTF A;  3SNO A;  1KJI A;  1I7N A;  3DAA A;  4O86 A;  3RFC A;  2OWO A;  4MV9 A;  3WO0 A;  3AX6 A;  2GQS A;  4TM5 A;  1PK8 A;  5BWT A;  4GLX A;  1I1L A;  3U9T A;  5I5V A;  4O2B F;  3DTG A;  3R5F A;  1AUV A;  1WRV A;  3GLK A;  3TW6 A;  3VOT A;  4FGR A;  1A0G A;  3DF7 A;  1VKZ A;  3I12 A;  3R5H A;  4CKE A;  5J2T F;  3VPC A;  4O4L F;  4C5A A;  2Q2U A;  1JKJ B;  2DZD A;  4FU0 A;  5DGH A;  1SCU B;  2W6O A;  4MV6 A;  2YWV A;  4L1K A;  4EGJ A;  1CE8 A;  1OBG A;  4RZQ A;  2HHF A;  2ZDG A;  1CS0 A;  3BAB A;  2HVS A;  1GGO A;  4FFR A;  1FVI A;  1Z2O X;  2R85 A;  1BNC A;  2NU7 B;  4O83 A;  3QQM A;  2DLN A;  3TIN A;  4XYM B;  1GSH A;  3MWD A;  2DAA A;  5JVD F;  2Q7D A;  2J9G A;  3TIG A;  3VPB A;  3T7A A;  2R87 A;  2W6P A;  3TQT A;  3NBZ B;  4O4I F;  3BA9 A;  2ZDQ A;  2W6N A;  2OLS A;  1EZ1 A;  2CFM A;  2YRW A;  1KJJ A;  3TY9 A;  1IYE A;  4O4H F;  1I1M A;  1CQJ B;  4HN2 A;  3OUU A;  3VPD A;  1EKP A;  3GJX B;  1M0W A;  2R86 A;  2YZL A;  2EJ2 A;  2Q2T A;  4ZI7 F;  3R23 A;  2Y4R A;  1W96 A;  1JLL B;  4TV9 F;  2YZM A;  2YS6 A;  3R5X A;  3K3P A;  3LP8 A;  3HO8 A;  4UCR A;  2R7L A;  2C00 A;  4CKC A;  3JSL A;  2CZG A;  1M0T A;  5BWU A;  2W71 A;  2FP4 B;  2GLT A;  3T9C A;  4TUY F;  4XYL B;  3BG5 A;  1KUT A;  3PFF A;  4Q4C A;  5E25 A;  4CE5 A;  2V5A A;  4O7R A;  1AUX A;  2R82 A;  1C30 A;  4HQ6 A;  1DGS A;  1A9X A;  3LQS A;  4RCN A;  2EJ0 A;  1KTA A;  1P8L A;  3NUA A;  3KYH C;  5J2U F;  5C8Y F;  2Z02 A;  1CKN B;  1VBG A;  1JDB B;  3N6R A;  5GON F;  3BA8 A;  3PN1 A;  5JVL A;  3T54 A;  4WBN F;  5I5W A;  2ZDH A;  1P16 A;  2HGX A;  4FE2 A;  2VQD A;  4IHJ F;  3V4S A;  5HBR B;  4IWY A;  3RUP A;  4CHI A;  5BWX A;  2EJ3 A;  2A1H A;  3QFF A;  3VNN A;  5EZY F;  3JRW A;  4UUG A;  3ETH A;  4O7W A;  4NZM A;  3TY8 A;  4MA5 A;  4LH7 A;  2NU9 B;  3UQ8 A;  2X5R A;  2YZN A;  5D1O B;  1EUD B;  5D1O A;  2COJ A;  2W6Z A;  2I8C A;  2YW2 A;  3AW8 A;  4MV4 A;  1VS0 A;  5BPH A;  3SE7 A;  1WR2 A;  1XK5 A;  2DIK A;  2I87 A;  4O7S A;  2COG A;  2ZGI A;  4O7L A;  4O7V A;  3TW7 A;  2R7M A;  1I7L A;  1KEE A;  1Z2N X;  4DAA A;  1IYD A;  4JXU A;  4O4J F;  4YBZ B;  4O7T A;  2CNU A;  2W6Q A;  4HR7 A;  2HDK A;  4QSH A;  3T9F A;  5JH7 F;  4IWX A;  3T9B A;  5I5U A;  2V58 A;  2DWC A;  5BWV A;  1EKV A;  3LUL A;  3OUZ A;  4HNT A;  3T99 A;  3W1B A;  1C3O A;  1TAE A;  3KAJ A;  2R84 A;  3JRX A;  2Z04 A;  2HJW A;  4FFO A;  2ABJ A;  5CR5 A;  3BAC A;  2NU8 B;  4EFB A;  3R9R A;  3TEK A;  2HG8 A;  1JDE A;  2GPW A;  2YS7 A;  2NU6 B;  3VMM A;  4FFP A;  3NC0 B;  4YJ2 F;  1GSA A;  4I55 F;  4MA0 A;  4XZ3 B;  4IZO A;  3JZI A;  2V59 A;  4EG0 A;  1CKM A;  1Z2P X;  2FPG B;  3JZ6 A;  2YRX A;  3U9S A;  4M0J A;  3HB9 A;  3GB8 B;  2HGW A;  1V9P A;  3V4Z A;  5CE8 A;  1OBD A;  1XDN A;  4C5B A;  3W5O A;  3U55 A;  5JQG F;  1A48 A;  2PN1 A;  5CM0 A;  4EEQ A;  5DAA A;  5LP6 F;  4O7Z A;  5I5T A;  5FNV F;  5C1P A;  4NYE A;  3RR5 A;  1B6S A;  1KBL A;  1KC7 A;  1ET0 A;  1EUC B;  4PZ7 A;  5LA6 F;  4EFE A;  3TY5 A;  2XCL A;  4MV8 A;  2XD4 A;  3RTX A;  3MWE A;  3HT5 A;  1CKN A;  1M6V A;  1KJ9 A;  4DRF A;  5IYZ F;  1KJQ A;  4O7Y A;  4YAJ B;  3Q1K A;  1DAA A;  4O2A F;  5FPR A;  5CB4 F;  4MV1 A;  1KJ8 A;  3T9A A;  4E6N A;  3KAL A;  2FPP B;  4UCV A;  4GLW A;  2FB9 A;  2SCU B;  3MJF A;  4UCO A;  4FFL A;  5CA1 F;  5DGI A;  1EYZ A;  3UFX B;  3JZF A;  4O84 A;  3WO1 A;  4CMF A;  4UCT A;  4DLK A;  4FFM A;  2FPI B;  4O82 A;  1TA8 A;  2W70 A;  1G2W A;  2EIY A;  5I5S A;  4EQ5 A;  1KT8 A;  1E4E B;  3WWI A;  3HBL A;  3W1G A;  4CKB A;  4HNV A;  2QF7 A;  2X0S A;  4O81 A;  4EGQ A;  3VA7 A;  4IIJ F;  4ZHQ F;  5CA0 F;  2CNQ A;  2PBZ A;  4MV7 A;  4TV8 F;  3RV4 A;  5BYB A;  1UC9 A;  1UC8 A;  4DIM A;  3NBY B;  4NZO A;  3LWB A;  4YB8 B;  3T9E A;  5BMV F;  1ZAU A;  2IP4 A;  3KAK A;  4MV3 A;  1B6R A;  3T9D A;  2HVQ A;  2W6M A;  1EHI A;  3WWJ A;  3CEB A;  5D1P A;  4I50 F;  4O7N A;  3Q2O A;  5C1O A;  3GDE A;  4MAM A;  5CAE B;  3S24 A;  5KKN B;  3U0G A;  4I4T F;  2HIV A;  5FR9 A;  5BYA A;  1T36 A;  2CNV A;  2HIX A;  4ZOL F;  2R7N A;  1A0I A;  2PVP A;  5FPO A;  1X9N A;  3QWU A;  1BXR A;  2HHF B;  4M9U A;  5K3W A;  2YYA A;  3UZB A;  2R7K A;  5BWR A;  1IOW A;  2QB5 A;  5HNE A;  2GPS A;  1I2L A;  4HNU A;  3SGI A;  4CC5 A;  5BPF A;  5DMX A;  5LOV F;  3CSW A;  1VBH A;  4UCS A;  5KS8 A;  3L2P A;  3RV3 A;  4PBC A;  5I5X A;  4K6N A;  4Y8V B;  1S68 A;  5HV6 A;  3K5H A;  3TII A;  2P0A A;  4YAK B;  4UCU A;  1DIK A;  1EKF A; 
#chains in the Genus database with same CATH homology
 3HT5 A;  2DAB A;  2X5R A;  2COJ A;  2HHF A;  5BWW A;  4Q4D A;  1DAA A;  3T9A A;  3WWH A;  4DQN A;  3QQM A;  4GLW A;  2COG A;  2ZGI A;  2DAA A;  3TW7 A;  4CMD A;  2COI A;  2Q7D A;  3T7A A;  4DAA A;  3UYY A;  5I60 A;  5DGI A;  1IYD A;  4JXU A;  2HDK A;  1IYE A;  4CMF A;  3T9F A;  4WHX A;  1I1M A;  4IWX A;  3T9B A;  5I5U A;  4HN2 A;  1G2W A;  2EIY A;  3VPD A;  1EKP A;  5BWV A;  5I5S A;  1KT8 A;  1EKV A;  3LUL A;  3WWI A;  3T99 A;  1I2K A;  1A3G A;  2EJ2 A;  4CKB A;  5I5Y A;  2Y4R A;  2ABJ A;  5CR5 A;  3BAC A;  4CKC A;  5BYB A;  1UC9 A;  5BWU A;  1UC8 A;  1I1K A;  3T9C A;  4NZO A;  3UZO A;  5K2M A;  3TEK A;  3T9E A;  5I47 A;  1ZAU A;  2HG8 A;  3PFF A;  4Q4C A;  5E25 A;  3T9D A;  4CE5 A;  3WWJ A;  4NZN A;  3CEB A;  2ODT X;  3DTF A;  3SNO A;  3DAA A;  3JZ6 A;  3LQS A;  4RCN A;  2EJ0 A;  1KTA A;  3U0G A;  4M0J A;  4TM5 A;  5FR9 A;  5BWT A;  2HGW A;  5BYA A;  5CE8 A;  1I1L A;  5I5V A;  3DTG A;  2HHF B;  5K3W A;  3UZB A;  1WRV A;  3T54 A;  5BWR A;  5I5W A;  5CM0 A;  2HGX A;  5DAA A;  2QB5 A;  5HNE A;  5I5T A;  1I2L A;  3SGI A;  1A0G A;  4IWY A;  4CKE A;  4CHI A;  5BWX A;  2EJ3 A;  2A1H A;  3CSW A;  1ET0 A;  5KS8 A;  4PBC A;  5I5X A;  4K6N A;  4UUG A;  5DGH A;  4NZM A;  4TVI A;  1EKF A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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