3TGOC

Crystal structure of the e. coli bamcd complex
Total Genus 43
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
43
sequence length
186
structure length
182
Chain Sequence
DSRYKRQVSGDEAYLEAAPLAELHAPAGMILPVTSGDYAIPVTNGSGAVGKALDIRPPAQPLALVSGARTQFTGDTASLLVENTLWPQVVSVLQAKNYTITQRDDAGQTLTTDWVQWNRLDEDEQYRGRYQISVKPQGYQQAVTVKLLNLEQAGKPVADAASMQRYSTEMMNVISAGLDKSA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of the beta-barrel assembly machinery BamCD protein complex
pubmed doi rcsb
molecule tags Membrane protein
source organism Escherichia coli
molecule keywords UPF0169 lipoprotein yfiO
total genus 43
structure length 182
sequence length 186
chains with identical sequence D
ec nomenclature
pdb deposition date 2011-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
C PF06804 Lipoprotein_18 NlpB/DapX lipoprotein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.530.50 Alpha Beta 2-Layer Sandwich Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 3tgoC01
3TGOC 2LAFA 2YH6A 5EKQC
chains in the Genus database with same CATH superfamily
3K90A 2K7HA 2L8OA 2LE1A 2N4AA 1LN2A 2QPVA 2WQLA 2YH6A 1TW0A 3KDHA 3KLXA 1XUVA 3F08A 5JO1A 4JHYA 5I9JA 4JDAA 3JRQB 4QDFB 4A86A 4A8VA 3PUTA 3HK2A 3NMNA 2R55A 3UIDA 2KEWA 4QIPA 4DS8A 5EKQC 4BK6A 2E3OA 4IGVA 3GTEA 3OH8A 1BTVA 5I8FA 2LAFA 3KDJA 3DLHA 3P51A 4OICA 3NJ0A 2KCZA 4GY9A 3TGOC 2E3RA 2FLHA 3ZVUA 3NS2A 3NMHA 4N47A 4DSCA 3NEGA 3P0LA 4IGWA 3W9RA 4MNSA 4BKCA 4A84A 3Q64A 4Y31A 1EM2A 4QCKA 4A8GA 3KB0A 3HJFA 3Q63A 3TFZA 3GGNA 3GOBA 2ZYLA 3H3RA 3QSZA 4BK7A 4C9IA 4PSBA 3HVRA 2L9PA 2NN5A 1LLTA 4QDFA 3GL0A 4XRTA 3HXMA 4KPYA 2LUZA 1FM4A 1BV1A 2E3MA 2FFSA 4JHHA 2LCGA 4B9RA 3OTLA 1T17A 2KTEA 2M47A 3OJIA 1T27A 4N3EA 3RD6A 2LEQA 3NMPA 3KAYA 4N76A 2Z9ZA 3KB3A 3K3KA 3H3SA 3P9VA 1XFSA 5JO2A 1KCMA 1X53A 2K5GA 3C0VA 3GL2A 3NMVA 4IHRA 4LA7A 3FO5A 4M9BA 2IL5A 2KF2A 5C9YA 4N41A 2VNEA 3DLBA 2M89A 3NI8A 4A88A 2PSOA 2E3NA 3HO1A 4WVOA 4JDLA 2EJXA 3PU2A 3OQUA 3NQNA 4IH0A 5E4BA 3ELIA 4FPWA 2NS9A 3UQHA 3NEFA 1LN3A 2RERA 3GTSA 3QN1A 4REIA 2QIMA 4IGXA 1JSSA 1XDFA 4R7KA 3GKEA 4Z3LA 2LF2A 1UW5A 3IJTA 3H3TA 2MOUA 1Z94A 5E46A 2I9YA 3H3QA 2E3QA 3R6PA 4NCBA 2REZA 3RT2A 1H2OA 3HM9A 1ICXA 4IH2A 4NCAA 2N4BA 3CNWA 3TVQA 5JNNA 2A1LA 4RYVA 2GKDA 5E4DA 2LGHA 2BK0A 4A85A 4IGYA 4LGAA 3NR4A 2L65A 2LDKA 3W9KA 2RESA 1FSKA 3Q6AA 3TVRA 4XRWA 2Q3QA 3NJ1A 4MA6A 3JRSA 2LAKA 4M9WA 4A8UA 4C9CA 4BTZA 4A81A 4BKDA 4N0GC 2E3SA 1XN6A 2LPXA 4LGBA 4QDDA 4E6FA 3E85A 3TL1A 2E3PA 2LIOA 4C94A 4JHGA 4MAPA 2Z9YA 4REJA 4Q0KA 1B6FA 5AMWA 3KL1A 4REHA 1LN1A 4DSBA 5BRLA 3WG8A 3KAZA 1ZXFA 2PCSA 3F73A 3GB4A 1E09A 3IE5A 3NMTA 3KDIA 4JHIA 3UJLA 1XN5A 4QDCA 4LG5A 2D4RA 2VQ5A 4A80A 1IFVA 1QMRA 3NJOA 4A87A 1VJHA 5E4MA 1TXCA 3RT0C 4A83A
chains in the Genus database with same CATH topology
3K90A 2K7HA 2L8OA 2LE1A 2N4AA 1LN2A 2QPVA 2WQLA 2YH6A 1TW0A 3KDHA 3KLXA 1XUVA 3F08A 5JO1A 4JHYA 5I9JA 4JDAA 3JRQB 4QDFB 4A86A 4A8VA 3PUTA 3HK2A 3NMNA 2R55A 3UIDA 2KEWA 4QIPA 4DS8A 5EKQC 4BK6A 2E3OA 4IGVA 3GTEA 3OH8A 1BTVA 5I8FA 2LAFA 3KDJA 3DLHA 3P51A 4OICA 3NJ0A 2KCZA 4GY9A 3TGOC 2E3RA 2FLHA 3ZVUA 3NS2A 3NMHA 4N47A 4DSCA 3NEGA 3P0LA 4IGWA 3W9RA 4MNSA 4BKCA 4A84A 3Q64A 4Y31A 1EM2A 4QCKA 4A8GA 3KB0A 3HJFA 3Q63A 3TFZA 3GGNA 3GOBA 2ZYLA 3H3RA 3QSZA 4BK7A 4C9IA 4PSBA 3HVRA 2L9PA 2NN5A 1LLTA 4QDFA 3GL0A 4XRTA 3HXMA 4KPYA 2LUZA 1FM4A 1BV1A 2E3MA 2FFSA 4JHHA 2LCGA 4B9RA 3OTLA 1T17A 2KTEA 2M47A 3OJIA 1T27A 4N3EA 3RD6A 2LEQA 3NMPA 3KAYA 4N76A 2Z9ZA 3KB3A 3K3KA 3H3SA 3P9VA 1XFSA 5JO2A 1KCMA 1X53A 2K5GA 3C0VA 3GL2A 3NMVA 4IHRA 4LA7A 3FO5A 4M9BA 2IL5A 2KF2A 5C9YA 4N41A 2VNEA 3DLBA 2M89A 3NI8A 4A88A 2PSOA 2E3NA 3HO1A 4WVOA 4JDLA 2EJXA 3PU2A 3OQUA 3NQNA 4IH0A 5E4BA 3ELIA 4FPWA 2NS9A 3UQHA 3NEFA 1LN3A 2RERA 3GTSA 3QN1A 4REIA 2QIMA 4IGXA 1JSSA 1XDFA 4R7KA 3GKEA 4Z3LA 2LF2A 1UW5A 3IJTA 3H3TA 2MOUA 1Z94A 5E46A 2I9YA 3H3QA 2E3QA 3R6PA 4NCBA 2REZA 3RT2A 1H2OA 3HM9A 1ICXA 4IH2A 4NCAA 2N4BA 3CNWA 3TVQA 5JNNA 2A1LA 4RYVA 2GKDA 5E4DA 2LGHA 2BK0A 4A85A 4IGYA 4LGAA 3NR4A 2L65A 2LDKA 3W9KA 2RESA 1FSKA 3Q6AA 3TVRA 4XRWA 2Q3QA 3NJ1A 4MA6A 3JRSA 2LAKA 4M9WA 4A8UA 4C9CA 4BTZA 4A81A 4BKDA 4N0GC 2E3SA 1XN6A 2LPXA 4LGBA 4QDDA 4E6FA 3E85A 3TL1A 2E3PA 2LIOA 4C94A 4JHGA 4MAPA 2Z9YA 4REJA 4Q0KA 1B6FA 5AMWA 3KL1A 4REHA 1LN1A 4DSBA 5BRLA 3WG8A 3KAZA 1ZXFA 2PCSA 3F73A 3GB4A 1E09A 3IE5A 3NMTA 3KDIA 4JHIA 3UJLA 1XN5A 4QDCA 4LG5A 2D4RA 2VQ5A 4A80A 1IFVA 1QMRA 3NJOA 4A87A 1VJHA 5E4MA 1TXCA 3RT0C 4A83A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TGO C;  2LAF A;  2YH6 A;  5EKQ C; 
#chains in the Genus database with same CATH topology
 3K90 A;  2K7H A;  2L8O A;  2LE1 A;  2N4A A;  1LN2 A;  2QPV A;  2WQL A;  2YH6 A;  1TW0 A;  3KDH A;  3KLX A;  1XUV A;  3F08 A;  5JO1 A;  4JHY A;  5I9J A;  4JDA A;  3JRQ B;  4QDF B;  4A86 A;  4A8V A;  3PUT A;  3HK2 A;  3NMN A;  2R55 A;  3UID A;  2KEW A;  4QIP A;  4DS8 A;  5EKQ C;  4BK6 A;  2E3O A;  4IGV A;  3GTE A;  3OH8 A;  1BTV A;  5I8F A;  2LAF A;  3KDJ A;  3DLH A;  3P51 A;  4OIC A;  3NJ0 A;  2KCZ A;  4GY9 A;  3TGO C;  2E3R A;  2FLH A;  3ZVU A;  3NS2 A;  3NMH A;  4N47 A;  4DSC A;  3NEG A;  3P0L A;  4IGW A;  3W9R A;  4MNS A;  4BKC A;  4A84 A;  3Q64 A;  4Y31 A;  1EM2 A;  4QCK A;  4A8G A;  3KB0 A;  3HJF A;  3Q63 A;  3TFZ A;  3GGN A;  3GOB A;  2ZYL A;  3H3R A;  3QSZ A;  4BK7 A;  4C9I A;  4PSB A;  3HVR A;  2L9P A;  2NN5 A;  1LLT A;  4QDF A;  3GL0 A;  4XRT A;  3HXM A;  4KPY A;  2LUZ A;  1FM4 A;  1BV1 A;  2E3M A;  2FFS A;  4JHH A;  2LCG A;  4B9R A;  3OTL A;  1T17 A;  2KTE A;  2M47 A;  3OJI A;  1T27 A;  4N3E A;  3RD6 A;  2LEQ A;  3NMP A;  3KAY A;  4N76 A;  2Z9Z A;  3KB3 A;  3K3K A;  3H3S A;  3P9V A;  1XFS A;  5JO2 A;  1KCM A;  1X53 A;  2K5G A;  3C0V A;  3GL2 A;  3NMV A;  4IHR A;  4LA7 A;  3FO5 A;  4M9B A;  2IL5 A;  2KF2 A;  5C9Y A;  4N41 A;  2VNE A;  3DLB A;  2M89 A;  3NI8 A;  4A88 A;  2PSO A;  2E3N A;  3HO1 A;  4WVO A;  4JDL A;  2EJX A;  3PU2 A;  3OQU A;  3NQN A;  4IH0 A;  5E4B A;  3ELI A;  4FPW A;  2NS9 A;  3UQH A;  3NEF A;  1LN3 A;  2RER A;  3GTS A;  3QN1 A;  4REI A;  2QIM A;  4IGX A;  1JSS A;  1XDF A;  4R7K A;  3GKE A;  4Z3L A;  2LF2 A;  1UW5 A;  3IJT A;  3H3T A;  2MOU A;  1Z94 A;  5E46 A;  2I9Y A;  3H3Q A;  2E3Q A;  3R6P A;  4NCB A;  2REZ A;  3RT2 A;  1H2O A;  3HM9 A;  1ICX A;  4IH2 A;  4NCA A;  2N4B A;  3CNW A;  3TVQ A;  5JNN A;  2A1L A;  4RYV A;  2GKD A;  5E4D A;  2LGH A;  2BK0 A;  4A85 A;  4IGY A;  4LGA A;  3NR4 A;  2L65 A;  2LDK A;  3W9K A;  2RES A;  1FSK A;  3Q6A A;  3TVR A;  4XRW A;  2Q3Q A;  3NJ1 A;  4MA6 A;  3JRS A;  2LAK A;  4M9W A;  4A8U A;  4C9C A;  4BTZ A;  4A81 A;  4BKD A;  4N0G C;  2E3S A;  1XN6 A;  2LPX A;  4LGB A;  4QDD A;  4E6F A;  3E85 A;  3TL1 A;  2E3P A;  2LIO A;  4C94 A;  4JHG A;  4MAP A;  2Z9Y A;  4REJ A;  4Q0K A;  1B6F A;  5AMW A;  3KL1 A;  4REH A;  1LN1 A;  4DSB A;  5BRL A;  3WG8 A;  3KAZ A;  1ZXF A;  2PCS A;  3F73 A;  3GB4 A;  1E09 A;  3IE5 A;  3NMT A;  3KDI A;  4JHI A;  3UJL A;  1XN5 A;  4QDC A;  4LG5 A;  2D4R A;  2VQ5 A;  4A80 A;  1IFV A;  1QMR A;  3NJO A;  4A87 A;  1VJH A;  5E4M A;  1TXC A;  3RT0 C;  4A83 A; 
#chains in the Genus database with same CATH homology
 3K90 A;  2K7H A;  2L8O A;  2LE1 A;  2N4A A;  1LN2 A;  2QPV A;  2WQL A;  2YH6 A;  1TW0 A;  3KDH A;  3KLX A;  1XUV A;  3F08 A;  5JO1 A;  4JHY A;  5I9J A;  4JDA A;  3JRQ B;  4QDF B;  4A86 A;  4A8V A;  3PUT A;  3HK2 A;  3NMN A;  2R55 A;  3UID A;  2KEW A;  4QIP A;  4DS8 A;  5EKQ C;  4BK6 A;  2E3O A;  4IGV A;  3GTE A;  3OH8 A;  1BTV A;  5I8F A;  2LAF A;  3KDJ A;  3DLH A;  3P51 A;  4OIC A;  3NJ0 A;  2KCZ A;  4GY9 A;  3TGO C;  2E3R A;  2FLH A;  3ZVU A;  3NS2 A;  3NMH A;  4N47 A;  4DSC A;  3NEG A;  3P0L A;  4IGW A;  3W9R A;  4MNS A;  4BKC A;  4A84 A;  3Q64 A;  4Y31 A;  1EM2 A;  4QCK A;  4A8G A;  3KB0 A;  3HJF A;  3Q63 A;  3TFZ A;  3GGN A;  3GOB A;  2ZYL A;  3H3R A;  3QSZ A;  4BK7 A;  4C9I A;  4PSB A;  3HVR A;  2L9P A;  2NN5 A;  1LLT A;  4QDF A;  3GL0 A;  4XRT A;  3HXM A;  4KPY A;  2LUZ A;  1FM4 A;  1BV1 A;  2E3M A;  2FFS A;  4JHH A;  2LCG A;  4B9R A;  3OTL A;  1T17 A;  2KTE A;  2M47 A;  3OJI A;  1T27 A;  4N3E A;  3RD6 A;  2LEQ A;  3NMP A;  3KAY A;  4N76 A;  2Z9Z A;  3KB3 A;  3K3K A;  3H3S A;  3P9V A;  1XFS A;  5JO2 A;  1KCM A;  1X53 A;  2K5G A;  3C0V A;  3GL2 A;  3NMV A;  4IHR A;  4LA7 A;  3FO5 A;  4M9B A;  2IL5 A;  2KF2 A;  5C9Y A;  4N41 A;  2VNE A;  3DLB A;  2M89 A;  3NI8 A;  4A88 A;  2PSO A;  2E3N A;  3HO1 A;  4WVO A;  4JDL A;  2EJX A;  3PU2 A;  3OQU A;  3NQN A;  4IH0 A;  5E4B A;  3ELI A;  4FPW A;  2NS9 A;  3UQH A;  3NEF A;  1LN3 A;  2RER A;  3GTS A;  3QN1 A;  4REI A;  2QIM A;  4IGX A;  1JSS A;  1XDF A;  4R7K A;  3GKE A;  4Z3L A;  2LF2 A;  1UW5 A;  3IJT A;  3H3T A;  2MOU A;  1Z94 A;  5E46 A;  2I9Y A;  3H3Q A;  2E3Q A;  3R6P A;  4NCB A;  2REZ A;  3RT2 A;  1H2O A;  3HM9 A;  1ICX A;  4IH2 A;  4NCA A;  2N4B A;  3CNW A;  3TVQ A;  5JNN A;  2A1L A;  4RYV A;  2GKD A;  5E4D A;  2LGH A;  2BK0 A;  4A85 A;  4IGY A;  4LGA A;  3NR4 A;  2L65 A;  2LDK A;  3W9K A;  2RES A;  1FSK A;  3Q6A A;  3TVR A;  4XRW A;  2Q3Q A;  3NJ1 A;  4MA6 A;  3JRS A;  2LAK A;  4M9W A;  4A8U A;  4C9C A;  4BTZ A;  4A81 A;  4BKD A;  4N0G C;  2E3S A;  1XN6 A;  2LPX A;  4LGB A;  4QDD A;  4E6F A;  3E85 A;  3TL1 A;  2E3P A;  2LIO A;  4C94 A;  4JHG A;  4MAP A;  2Z9Y A;  4REJ A;  4Q0K A;  1B6F A;  5AMW A;  3KL1 A;  4REH A;  1LN1 A;  4DSB A;  5BRL A;  3WG8 A;  3KAZ A;  1ZXF A;  2PCS A;  3F73 A;  3GB4 A;  1E09 A;  3IE5 A;  3NMT A;  3KDI A;  4JHI A;  3UJL A;  1XN5 A;  4QDC A;  4LG5 A;  2D4R A;  2VQ5 A;  4A80 A;  1IFV A;  1QMR A;  3NJO A;  4A87 A;  1VJH A;  5E4M A;  1TXC A;  3RT0 C;  4A83 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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