3TGVA

Crystal structure of hutz,the heme storsge protein from vibrio cholerae
Total Genus 42
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
42
sequence length
142
structure length
142
Chain Sequence
MRLEPEIKEFRQERKTLQLATVDAQGRPNVSYAPFVQNQEGYFVLISHIARHARNLEVNPQVSIMMIEDETEAKQLFARKRLTFDAVASMVERDSELWCQVIAQMGERFGEIIDGLSQLQDFMLFRLQPEQGLFVKGFGLEH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Heme binding protein
molecule keywords Heme-binding protein HutZ
publication title Crystal structure of HutZ,the heme storsge protein from Vibrio cholerae
rcsb
source organism Vibrio cholerae
total genus 42
structure length 142
sequence length 142
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2011-08-17

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01243 Putative_PNPOx Pyridoxamine 5'-phosphate oxidase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.30.110.10 Mainly Beta Roll Pnp Oxidase; Chain A Electron Transport, Fmn-binding Protein; Chain A 3tgvA00
3ZODA 4XJ2A 2R0XA 3A6QA 4Z85A 3K87A 3U0IA 4N7RC 4HMTA 4YBNA 5ESCA 1RZ1A 3HY8A 3DNHA 5BNCA 3R5YA 2OL5A 3R5RA 1TY9A 3HMZA 1CI0A 2AQ6A 3FGEA 4HMWA 2A2JA 2R6VA 4HMSA 3ZOEA 3TGVA 3K86A 2VPAA 1WLKA 3ZOHA 3DMBA 1WGBA 1RFEA 4IRAA 2PTFA 2IG6A 2QEAA 1XHNA 3BA3A 4QVBA 1T9MA 1FLMA 2D38A 2GJGA 2FHQA 3SWJA 1YLNA 1EJEA 3CB0A 1I0RA 1AXJA 1JNWA 4Y9IA 4F07A 2ARZA 3K88A 4HMXA 2I51A 1USFA 1W3QA 4HMVA 1W3RA 3ZOGA 3ZOFA 2QCKA 3IN6A 2D36A 1W9AA 2ASFA 1DNLA 1G77A 3VY2A 3VYAA 3KYFA 1G76A 3E4VA 1G79A 2IABA 2FG9A 3AWHA 2ED4A 3ZOCA 3EC6A 1G78A 4R82A 3U5WA 1VL7A 5CHOA 3H96A 1WLIA 3RH7A 3R5ZA 4ZKYA 2HQ9A 3R5WA 2ECUA 2HTIA 1W3OA 3F7EA 2RDEA 1RZ0A 2RE7A 2D37A 3BNKA 4YWNA 2IMLA 2FURA 4L82A 2HHZA 4HX6A 2I02A 1USCA 3PFTA 1XXOA 2E83A 2OU5A 3A20A 2X1KA 5CHEC 3BPKA 1NRGA 3VY5A 5JABA 2X1JA 3AMFA 1I0SA 2Q9KA 2HQ7A 3U35A 3DB0A 2NR4A 3GASA 1W3PA 1Y30A 3CP3A 3FKHA 2HTDA 3KYGA 1WV4A 2D5MA 3R5PA 3U34A 3A6RA 4HMUA 3R5LA 1YOAA 3NFWA 3B5MA 4XHYA 2ECRA
chains in the Genus database with same CATH superfamily
3ZODA 4XJ2A 2R0XA 3A6QA 4Z85A 3K87A 3U0IA 4N7RC 4HMTA 2GUJA 4YBNA 4HKHA 5ESCA 1RZ1A 3V4HA 3HY8A 3DNHA 4TV4A 3R5YA 2OL5A 5BNCA 3R5RA 2P5ZX 1TY9A 3HMZA 1CI0A 2AQ6A 3FGEA 4HMWA 2A2JA 2R6VA 4HMSA 3ZOEA 3TGVA 3K86A 2VPAA 1WLKA 3ZOHA 3DMBA 1WGBA 1RFEA 4IRAA 3EAAA 4UHVA 2PTFA 2IG6A 2QEAA 1Y12A 1XHNA 3BA3A 4QVBA 1T9MA 1FLMA 2D38A 2GJGA 2FHQA 3SWJA 1YLNA 1EJEA 3CB0A 1I0RA 1AXJA 1JNWA 4Y9IA 4F07A 2ARZA 3K88A 4HMXA 2I51A 1USFA 1W3QA 4HMVA 1W3RA 3ZOGA 3ZOFA 2QCKA 3IN6A 2D36A 1W9AA 2ASFA 1DNLA 1G77A 3VY2A 3VYAA 3KYFA 1G76A 3E4VA 1G79A 2IABA 2FG9A 3AWHA 2ED4A 2L1TA 3ZOCA 3EC6A 1G78A 4R82A 3U5WA 1VL7A 4W64A 5CHOA 3H96A 4MTKA 1WLIA 3RH7A 3R5ZA 4ZKYA 2HQ9A 3R5WA 2ECUA 2HTIA 1W3OA 3F7EA 2RDEA 1RZ0A 2RE7A 2D37A 3BNKA 4YWNA 2IMLA 2K4QA 2FURA 4L82A 2HHZA 4HX6A 3HE1A 2I02A 1USCA 3PFTA 1XXOA 2E83A 2OU5A 3A20A 2X1KA 5CHEC 3BPKA 1NRGA 3VY5A 5JABA 2X1JA 3AMFA 1I0SA 2Q9KA 2HQ7A 3U35A 3DB0A 2NR4A 3GASA 1W3PA 1Y30A 3CP3A 3FKHA 2HTDA 3KYGA 1WV4A 2D5MA 3R5PA 3U34A 3A6RA 4HMUA 3R5LA 1YOAA 3NFWA 3B5MA 4XHYA 2ECRA
chains in the Genus database with same CATH topology
3ZODA 4XJ2A 2R0XA 3A6QA 4Z85A 3K87A 3U0IA 4N7RC 4HMTA 4YBNA 5ESCA 1RZ1A 3HY8A 3DNHA 5BNCA 3R5YA 2OL5A 3R5RA 1TY9A 3HMZA 1CI0A 2AQ6A 3FGEA 4HMWA 2A2JA 2R6VA 4HMSA 3ZOEA 3TGVA 3K86A 2VPAA 1WLKA 3ZOHA 3DMBA 1WGBA 1RFEA 4IRAA 2PTFA 2IG6A 2QEAA 1XHNA 3BA3A 4QVBA 1T9MA 1FLMA 2D38A 2GJGA 2FHQA 3SWJA 1YLNA 1EJEA 3CB0A 1I0RA 1AXJA 1JNWA 4Y9IA 4F07A 2ARZA 3K88A 4HMXA 2I51A 1USFA 1W3QA 4HMVA 1W3RA 3ZOGA 3ZOFA 2QCKA 3IN6A 2D36A 1W9AA 2ASFA 1DNLA 1G77A 3VY2A 3VYAA 3KYFA 1G76A 3E4VA 1G79A 2IABA 2FG9A 3AWHA 2ED4A 3ZOCA 3EC6A 1G78A 4R82A 3U5WA 1VL7A 5CHOA 3H96A 1WLIA 3RH7A 3R5ZA 4ZKYA 2HQ9A 3R5WA 2ECUA 2HTIA 1W3OA 3F7EA 2RDEA 1RZ0A 2RE7A 2D37A 3BNKA 4YWNA 2IMLA 2FURA 4L82A 2HHZA 4HX6A 2I02A 1USCA 3PFTA 1XXOA 2E83A 2OU5A 3A20A 2X1KA 5CHEC 3BPKA 1NRGA 3VY5A 5JABA 2X1JA 3AMFA 1I0SA 2Q9KA 2HQ7A 3U35A 3DB0A 2NR4A 3GASA 1W3PA 1Y30A 3CP3A 3FKHA 2HTDA 3KYGA 1WV4A 2D5MA 3R5PA 3U34A 3A6RA 4HMUA 3R5LA 1YOAA 3NFWA 3B5MA 4XHYA 2ECRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZOD A;  4XJ2 A;  2R0X A;  3A6Q A;  4Z85 A;  3K87 A;  3U0I A;  4N7R C;  4HMT A;  4YBN A;  5ESC A;  1RZ1 A;  3HY8 A;  3DNH A;  5BNC A;  3R5Y A;  2OL5 A;  3R5R A;  1TY9 A;  3HMZ A;  1CI0 A;  2AQ6 A;  3FGE A;  4HMW A;  2A2J A;  2R6V A;  4HMS A;  3ZOE A;  3TGV A;  3K86 A;  2VPA A;  1WLK A;  3ZOH A;  3DMB A;  1WGB A;  1RFE A;  4IRA A;  2PTF A;  2IG6 A;  2QEA A;  1XHN A;  3BA3 A;  4QVB A;  1T9M A;  1FLM A;  2D38 A;  2GJG A;  2FHQ A;  3SWJ A;  1YLN A;  1EJE A;  3CB0 A;  1I0R A;  1AXJ A;  1JNW A;  4Y9I A;  4F07 A;  2ARZ A;  3K88 A;  4HMX A;  2I51 A;  1USF A;  1W3Q A;  4HMV A;  1W3R A;  3ZOG A;  3ZOF A;  2QCK A;  3IN6 A;  2D36 A;  1W9A A;  2ASF A;  1DNL A;  1G77 A;  3VY2 A;  3VYA A;  3KYF A;  1G76 A;  3E4V A;  1G79 A;  2IAB A;  2FG9 A;  3AWH A;  2ED4 A;  3ZOC A;  3EC6 A;  1G78 A;  4R82 A;  3U5W A;  1VL7 A;  5CHO A;  3H96 A;  1WLI A;  3RH7 A;  3R5Z A;  4ZKY A;  2HQ9 A;  3R5W A;  2ECU A;  2HTI A;  1W3O A;  3F7E A;  2RDE A;  1RZ0 A;  2RE7 A;  2D37 A;  3BNK A;  4YWN A;  2IML A;  2FUR A;  4L82 A;  2HHZ A;  4HX6 A;  2I02 A;  1USC A;  3PFT A;  1XXO A;  2E83 A;  2OU5 A;  3A20 A;  2X1K A;  5CHE C;  3BPK A;  1NRG A;  3VY5 A;  5JAB A;  2X1J A;  3AMF A;  1I0S A;  2Q9K A;  2HQ7 A;  3U35 A;  3DB0 A;  2NR4 A;  3GAS A;  1W3P A;  1Y30 A;  3CP3 A;  3FKH A;  2HTD A;  3KYG A;  1WV4 A;  2D5M A;  3R5P A;  3U34 A;  3A6R A;  4HMU A;  3R5L A;  1YOA A;  3NFW A;  3B5M A;  4XHY A;  2ECR A; 
#chains in the Genus database with same CATH topology
 3ZOD A;  4XJ2 A;  2R0X A;  3A6Q A;  4Z85 A;  3K87 A;  3U0I A;  4N7R C;  4HMT A;  2GUJ A;  4YBN A;  4HKH A;  5ESC A;  1RZ1 A;  3V4H A;  3HY8 A;  3DNH A;  4TV4 A;  3R5Y A;  2OL5 A;  5BNC A;  3R5R A;  2P5Z X;  1TY9 A;  3HMZ A;  1CI0 A;  2AQ6 A;  3FGE A;  4HMW A;  2A2J A;  2R6V A;  4HMS A;  3ZOE A;  3TGV A;  3K86 A;  2VPA A;  1WLK A;  3ZOH A;  3DMB A;  1WGB A;  1RFE A;  4IRA A;  3EAA A;  4UHV A;  2PTF A;  2IG6 A;  2QEA A;  1Y12 A;  1XHN A;  3BA3 A;  4QVB A;  1T9M A;  1FLM A;  2D38 A;  2GJG A;  2FHQ A;  3SWJ A;  1YLN A;  1EJE A;  3CB0 A;  1I0R A;  1AXJ A;  1JNW A;  4Y9I A;  4F07 A;  2ARZ A;  3K88 A;  4HMX A;  2I51 A;  1USF A;  1W3Q A;  4HMV A;  1W3R A;  3ZOG A;  3ZOF A;  2QCK A;  3IN6 A;  2D36 A;  1W9A A;  2ASF A;  1DNL A;  1G77 A;  3VY2 A;  3VYA A;  3KYF A;  1G76 A;  3E4V A;  1G79 A;  2IAB A;  2FG9 A;  3AWH A;  2ED4 A;  2L1T A;  3ZOC A;  3EC6 A;  1G78 A;  4R82 A;  3U5W A;  1VL7 A;  4W64 A;  5CHO A;  3H96 A;  4MTK A;  1WLI A;  3RH7 A;  3R5Z A;  4ZKY A;  2HQ9 A;  3R5W A;  2ECU A;  2HTI A;  1W3O A;  3F7E A;  2RDE A;  1RZ0 A;  2RE7 A;  2D37 A;  3BNK A;  4YWN A;  2IML A;  2K4Q A;  2FUR A;  4L82 A;  2HHZ A;  4HX6 A;  3HE1 A;  2I02 A;  1USC A;  3PFT A;  1XXO A;  2E83 A;  2OU5 A;  3A20 A;  2X1K A;  5CHE C;  3BPK A;  1NRG A;  3VY5 A;  5JAB A;  2X1J A;  3AMF A;  1I0S A;  2Q9K A;  2HQ7 A;  3U35 A;  3DB0 A;  2NR4 A;  3GAS A;  1W3P A;  1Y30 A;  3CP3 A;  3FKH A;  2HTD A;  3KYG A;  1WV4 A;  2D5M A;  3R5P A;  3U34 A;  3A6R A;  4HMU A;  3R5L A;  1YOA A;  3NFW A;  3B5M A;  4XHY A;  2ECR A; 
#chains in the Genus database with same CATH homology
 3ZOD A;  4XJ2 A;  2R0X A;  3A6Q A;  4Z85 A;  3K87 A;  3U0I A;  4N7R C;  4HMT A;  4YBN A;  5ESC A;  1RZ1 A;  3HY8 A;  3DNH A;  5BNC A;  3R5Y A;  2OL5 A;  3R5R A;  1TY9 A;  3HMZ A;  1CI0 A;  2AQ6 A;  3FGE A;  4HMW A;  2A2J A;  2R6V A;  4HMS A;  3ZOE A;  3TGV A;  3K86 A;  2VPA A;  1WLK A;  3ZOH A;  3DMB A;  1WGB A;  1RFE A;  4IRA A;  2PTF A;  2IG6 A;  2QEA A;  1XHN A;  3BA3 A;  4QVB A;  1T9M A;  1FLM A;  2D38 A;  2GJG A;  2FHQ A;  3SWJ A;  1YLN A;  1EJE A;  3CB0 A;  1I0R A;  1AXJ A;  1JNW A;  4Y9I A;  4F07 A;  2ARZ A;  3K88 A;  4HMX A;  2I51 A;  1USF A;  1W3Q A;  4HMV A;  1W3R A;  3ZOG A;  3ZOF A;  2QCK A;  3IN6 A;  2D36 A;  1W9A A;  2ASF A;  1DNL A;  1G77 A;  3VY2 A;  3VYA A;  3KYF A;  1G76 A;  3E4V A;  1G79 A;  2IAB A;  2FG9 A;  3AWH A;  2ED4 A;  3ZOC A;  3EC6 A;  1G78 A;  4R82 A;  3U5W A;  1VL7 A;  5CHO A;  3H96 A;  1WLI A;  3RH7 A;  3R5Z A;  4ZKY A;  2HQ9 A;  3R5W A;  2ECU A;  2HTI A;  1W3O A;  3F7E A;  2RDE A;  1RZ0 A;  2RE7 A;  2D37 A;  3BNK A;  4YWN A;  2IML A;  2FUR A;  4L82 A;  2HHZ A;  4HX6 A;  2I02 A;  1USC A;  3PFT A;  1XXO A;  2E83 A;  2OU5 A;  3A20 A;  2X1K A;  5CHE C;  3BPK A;  1NRG A;  3VY5 A;  5JAB A;  2X1J A;  3AMF A;  1I0S A;  2Q9K A;  2HQ7 A;  3U35 A;  3DB0 A;  2NR4 A;  3GAS A;  1W3P A;  1Y30 A;  3CP3 A;  3FKH A;  2HTD A;  3KYG A;  1WV4 A;  2D5M A;  3R5P A;  3U34 A;  3A6R A;  4HMU A;  3R5L A;  1YOA A;  3NFW A;  3B5M A;  4XHY A;  2ECR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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