3TH0A

P22 tailspike complexed with s.paratyphi o antigen octasaccharide
Total Genus 200
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
554
structure length
552
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title An essential serotype recognition pocket on phage P22 tailspike protein forces Salmonella enterica serovar Paratyphi A O-antigen fragments to bind as nonsolution conformers.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
molecule keywords Bifunctional tail protein
total genus 200
structure length 552
sequence length 554
ec nomenclature ec 3.2.1.-:
pdb deposition date 2011-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3th0A00
1TYUA 2VFOA 3SYJA 3RIQA 1TYWA 1CLWA 1QRBA 1TSPA 1TYVA 2XC1A 3AK5A 3TH0A 1QRCA 4KH3A 3ML3A 1QA2A 2VFNA 1TYXA 2VFMA 1QQ1A 1DABA 2IOUG 1WXRA 3SZEA 2VFQA 2VFPA 1QA1A 4OM9A 1QA3A 2V5IA 3H09A
chains in the Genus database with same CATH superfamily
2UVFA 4XORA 1KCDA 4YZAA 3SY2A 1IB4A 4Z06A 4YC5A 4EW9A 2NTPA 1PXZA 2XTYA 3VSVA 2X85A 2O0WA 2NTQA 4XM3A 2UVEA 4U49A 2VJIA 1O8JA 1EE6A 1O8EA 1RWRA 3VMWA 4V02C 3AK5A 1O8MA 1O8DA 1HF2A 1OFMA 1LLZA 2BM5A 2NSPA 4KH3A 3PSZA 2X6YA 1XG2A 3B8YA 3NB2A 4XQFA 2QXZA 1QA2A 4OZYA 4W8QA 2IQ7A 3DU1X 1KCCA 2QY1A 4XOTA 2NTBA 2INUA 1O8KA 3EQNA 4OJLA 4YZXA 4JRAC 4OJPA 2VFQA 1K5CA 4XKVA 1KQ5A 1QA1A 2BSPA 1JTAA 4OM9A 3LYCA 2V5IA 1CZFA 2Z8GA 2VFOA 1WMRA 3JURA 1VBLA 4OJ5A 4XLFA 3KRGA 1CLWA 2XT2A 1RMGA 4URRA 4XN3A 2XTXA 4MXNA 3SUCA 1DBOA 2BX6A 1TYVA 2VJJA 3GQAA 3ZSCA 4XONA 4Z03A 1OFDA 4OJ6A 1QCXA 4YZQA 3ZPPA 4YELA 1QRCA 3UW0A 4XNFA 3BH6B 4YEJA 3EQOA 2PECA 3LJYA 1TYXA 3WWGA 2VBEA 4C2LA 5JMCB 2VBMA 1LM1A 2BM4A 2BM6A 3T9GA 1L1IA 2QZAA 4XR6A 1BHEA 1PLUA 3GRHA 4XL9A 5C1EA 2XTWA 2O04A 4OPWA 2BM7A 4XLEA 3LMWA 1QA3A 1O8IA 1RU4A 1PE9A 4OJOA 2X6WA 1TYWA 3RIQA 2O17A 1O88A 2J8KA 2X6XA 2YUHA 4U4BA 4XLAA 1O8FA 2NT9A 2NZMA 2B0RA 4YCQA 1NHCA 1O8GA 3N6ZA 5JLVC 1JRGA 1LLWA 4W8SA 1X0CA 3ML3A 3VMVA 1IA5A 2VFMA 1OGOX 3PETA 4I84A 4XLHA 1QQ1A 2INVA 5DNSA 2IOUG 1O8HA 2O0VA 4HWVA 1QJVA 1WXRA 1OOCA 2O6WA 3N90A 2XT4A 4XN0A 5AMVA 1IDJA 3TH0A 3H09A 1DBGA 3GQ9A 4NK8A 1EA0A 1BN8A 1TYUA 4OZZA 3SYJA 1H80A 2QYUA 3NAWA 1K4ZA 2PYGA 3FY3A 2VBKA 2O1DA 1K8FA 1OFLA 3SQVA 4YDTA 1QRBA 1TSPA 4YEIA 3VSUA 4Z05A 2XC1A 2QX3A 4YFOA 3P4GA 2EWEA 3JX8A 2PYHA 1O8LA 3PSSA 3B4NA 2J8IA 3BH7B 4XLCA 1OFEA 4YZ0A 1AIRA 4NK6A 1EZGA 1HG8A 2W7ZA 3B90A 4XMYA 4AVZA 1OGMX 2VFNA 4W8TA 1GQ8A 2F3LA 2NT6A 5C1CA 1KTWA 2X3HA 1DABA 4W8RA 4XOPA 3VSTA 2NSTA 4XKWA 3SZEA 3GQ8A 4MR0A 1IDKA 2G0YA 2VFPA 4PMHA 3GQ7A 2ODLA
chains in the Genus database with same CATH topology
1TYUA 2VFOA 3SYJA 4OJOA 1K4ZA 4OJ5A 3RIQA 1TYWA 1CLWA 1K8FA 1QRBA 1TSPA 2YUHA 2BX6A 1TYVA 2B0RA 2XC1A 3AK5A 3P4GA 3JX8A 4V02C 1HF2A 3N6ZA 2J8IA 3BH7B 4OJ6A 2BM5A 3TH0A 5JLVC 1QRCA 4KH3A 3ML3A 3BH6B 2W7ZA 1QA2A 2VFNA 3LJYA 1TYXA 2VFMA 3PETA 2F3LA 5JMCB 1QQ1A 1DABA 2BM6A 2BM4A 2IOUG 4OJLA 1WXRA 4JRAC 4OJPA 3SZEA 3N90A 2VFQA 4OPWA 2BM7A 2G0YA 1KQ5A 2VFPA 4OM9A 1QA1A 1QA3A 3LYCA 2V5IA 3H09A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TYU A;  2VFO A;  3SYJ A;  3RIQ A;  1TYW A;  1CLW A;  1QRB A;  1TSP A;  1TYV A;  2XC1 A;  3AK5 A;  3TH0 A;  1QRC A;  4KH3 A;  3ML3 A;  1QA2 A;  2VFN A;  1TYX A;  2VFM A;  1QQ1 A;  1DAB A;  2IOU G;  1WXR A;  3SZE A;  2VFQ A;  2VFP A;  1QA1 A;  4OM9 A;  1QA3 A;  2V5I A;  3H09 A; 
#chains in the Genus database with same CATH topology
 2UVF A;  4XOR A;  1KCD A;  4YZA A;  3SY2 A;  1IB4 A;  4Z06 A;  4YC5 A;  4EW9 A;  2NTP A;  1PXZ A;  2XTY A;  3VSV A;  2X85 A;  2O0W A;  2NTQ A;  4XM3 A;  2UVE A;  4U49 A;  2VJI A;  1O8J A;  1EE6 A;  1O8E A;  1RWR A;  3VMW A;  4V02 C;  3AK5 A;  1O8M A;  1O8D A;  1HF2 A;  1OFM A;  1LLZ A;  2BM5 A;  2NSP A;  4KH3 A;  3PSZ A;  2X6Y A;  1XG2 A;  3B8Y A;  3NB2 A;  4XQF A;  2QXZ A;  1QA2 A;  4OZY A;  4W8Q A;  2IQ7 A;  3DU1 X;  1KCC A;  2QY1 A;  4XOT A;  2NTB A;  2INU A;  1O8K A;  3EQN A;  4OJL A;  4YZX A;  4JRA C;  4OJP A;  2VFQ A;  1K5C A;  4XKV A;  1KQ5 A;  1QA1 A;  2BSP A;  1JTA A;  4OM9 A;  3LYC A;  2V5I A;  1CZF A;  2Z8G A;  2VFO A;  1WMR A;  3JUR A;  1VBL A;  4OJ5 A;  4XLF A;  3KRG A;  1CLW A;  2XT2 A;  1RMG A;  4URR A;  4XN3 A;  2XTX A;  4MXN A;  3SUC A;  1DBO A;  2BX6 A;  1TYV A;  2VJJ A;  3GQA A;  3ZSC A;  4XON A;  4Z03 A;  1OFD A;  4OJ6 A;  1QCX A;  4YZQ A;  3ZPP A;  4YEL A;  1QRC A;  3UW0 A;  4XNF A;  3BH6 B;  4YEJ A;  3EQO A;  2PEC A;  3LJY A;  1TYX A;  3WWG A;  2VBE A;  4C2L A;  5JMC B;  2VBM A;  1LM1 A;  2BM4 A;  2BM6 A;  3T9G A;  1L1I A;  2QZA A;  4XR6 A;  1BHE A;  1PLU A;  3GRH A;  4XL9 A;  5C1E A;  2XTW A;  2O04 A;  4OPW A;  2BM7 A;  4XLE A;  3LMW A;  1QA3 A;  1O8I A;  1RU4 A;  1PE9 A;  4OJO A;  2X6W A;  1TYW A;  3RIQ A;  2O17 A;  1O88 A;  2J8K A;  2X6X A;  2YUH A;  4U4B A;  4XLA A;  1O8F A;  2NT9 A;  2NZM A;  2B0R A;  4YCQ A;  1NHC A;  1O8G A;  3N6Z A;  5JLV C;  1JRG A;  1LLW A;  4W8S A;  1X0C A;  3ML3 A;  3VMV A;  1IA5 A;  2VFM A;  1OGO X;  3PET A;  4I84 A;  4XLH A;  1QQ1 A;  2INV A;  5DNS A;  2IOU G;  1O8H A;  2O0V A;  4HWV A;  1QJV A;  1WXR A;  1OOC A;  2O6W A;  3N90 A;  2XT4 A;  4XN0 A;  5AMV A;  1IDJ A;  3TH0 A;  3H09 A;  1DBG A;  3GQ9 A;  4NK8 A;  1EA0 A;  1BN8 A;  1TYU A;  4OZZ A;  3SYJ A;  1H80 A;  2QYU A;  3NAW A;  1K4Z A;  2PYG A;  3FY3 A;  2VBK A;  2O1D A;  1K8F A;  1OFL A;  3SQV A;  4YDT A;  1QRB A;  1TSP A;  4YEI A;  3VSU A;  4Z05 A;  2XC1 A;  2QX3 A;  4YFO A;  3P4G A;  2EWE A;  3JX8 A;  2PYH A;  1O8L A;  3PSS A;  3B4N A;  2J8I A;  3BH7 B;  4XLC A;  1OFE A;  4YZ0 A;  1AIR A;  4NK6 A;  1EZG A;  1HG8 A;  2W7Z A;  3B90 A;  4XMY A;  4AVZ A;  1OGM X;  2VFN A;  4W8T A;  1GQ8 A;  2F3L A;  2NT6 A;  5C1C A;  1KTW A;  2X3H A;  1DAB A;  4W8R A;  4XOP A;  3VST A;  2NST A;  4XKW A;  3SZE A;  3GQ8 A;  4MR0 A;  1IDK A;  2G0Y A;  2VFP A;  4PMH A;  3GQ7 A;  2ODL A; 
#chains in the Genus database with same CATH homology
 1TYU A;  2VFO A;  3SYJ A;  4OJO A;  1K4Z A;  4OJ5 A;  3RIQ A;  1TYW A;  1CLW A;  1K8F A;  1QRB A;  1TSP A;  2YUH A;  2BX6 A;  1TYV A;  2B0R A;  2XC1 A;  3AK5 A;  3P4G A;  3JX8 A;  4V02 C;  1HF2 A;  3N6Z A;  2J8I A;  3BH7 B;  4OJ6 A;  2BM5 A;  3TH0 A;  5JLV C;  1QRC A;  4KH3 A;  3ML3 A;  3BH6 B;  2W7Z A;  1QA2 A;  2VFN A;  3LJY A;  1TYX A;  2VFM A;  3PET A;  2F3L A;  5JMC B;  1QQ1 A;  1DAB A;  2BM6 A;  2BM4 A;  2IOU G;  4OJL A;  1WXR A;  4JRA C;  4OJP A;  3SZE A;  3N90 A;  2VFQ A;  4OPW A;  2BM7 A;  2G0Y A;  1KQ5 A;  2VFP A;  4OM9 A;  1QA1 A;  1QA3 A;  3LYC A;  2V5I A;  3H09 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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