3TH0A

P22 tailspike complexed with s.paratyphi o antigen octasaccharide
Total Genus 200
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
554
structure length
552
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title An essential serotype recognition pocket on phage P22 tailspike protein forces Salmonella enterica serovar Paratyphi A O-antigen fragments to bind as nonsolution conformers.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
molecule keywords Bifunctional tail protein
total genus 200
structure length 552
sequence length 554
ec nomenclature ec 3.2.1.-:
pdb deposition date 2011-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3th0A00
3RIQA 2IOUG 2VFOA 1QRCA 1TYVA 2VFMA 3AK5A 2V5IA 3TH0A 3ML3A 1TYUA 1DABA 1CLWA 3SYJA 1TYXA 1QRBA 1TYWA 4OM9A 1QQ1A 1TSPA 2XC1A 2VFNA 2VFQA 1WXRA 3SZEA 1QA2A 2VFPA 4KH3A 1QA1A 1QA3A 3H09A
chains in the Genus database with same CATH superfamily
4YZAA 2QX3A 1KTWA 2BM4A 2IOUG 2O0VA 4XLEA 2VFOA 3ZSCA 4YELA 1CZFA 3SQVA 1OFLA 3PETA 3T9GA 3VSTA 2BM7A 4W8RA 1QRCA 1O8LA 3GQ8A 4YZQA 4OJLA 2VFMA 3NAWA 1K5CA 2QYUA 1H80A 4YC5A 1L1IA 2VBMA 2V5IA 2XTYA 1BHEA 1XG2A 3B90A 4XLHA 3KRGA 3JX8A 3VSVA 4YEJA 1IDKA 5AMVA 3WWGA 1O8GA 1QRBA 1X0CA 4OZYA 1WMRA 4URRA 1VBLA 4XOTA 1O8IA 4OPWA 1QJVA 2J8IA 3SZEA 4JRAC 2W7ZA 5JLVC 1GQ8A 3LYCA 2NZMA 1BN8A 2PYHA 5C1EA 1K8FA 4XN3A 1LM1A 3GRHA 3H09A 1NHCA 1EA0A 3RIQA 1KQ5A 4YFOA 3GQAA 4OJPA 4XONA 4XN0A 3BH6B 4EW9A 2O0WA 4YZXA 4W8QA 2O17A 2BM5A 1AIRA 3FY3A 4OJ6A 1O8HA 2BM6A 4XORA 2VJIA 4XQFA 3TH0A 1RWRA 3ML3A 1HF2A 2NT6A 4Z03A 1TYUA 4XOPA 1O8EA 3PSSA 1JRGA 2XT2A 4XR6A 1RMGA 1O8JA 2X6XA 4XMYA 2XTWA 2XT4A 1QA2A 2NT9A 5JMCB 4I84A 2X6YA 2X85A 4XNFA 1OFMA 1IDJA 1JTAA 2UVEA 1QA1A 1QA3A 4XKWA 4V02C 2Z8GA 4YZ0A 2VBKA 4XKVA 1HG8A 4U4BA 4YEIA 2INUA 4OJ5A 1PXZA 4AVZA 4NK8A 2NTPA 4U49A 1DBOA 3GQ7A 4Z06A 3UW0A 3AK5A 4YDTA 1KCDA 2PYGA 3P4GA 1PLUA 2QY1A 3ZPPA 4XLFA 4XM3A 3PSZA 1IA5A 1LLZA 4OM9A 4HWVA 2X6WA 1TSPA 2QXZA 3JURA 2INVA 2VFQA 4XL9A 2G0YA 2VJJA 1EZGA 4W8TA 1QCXA 3LMWA 3B8YA 2O1DA 4XLAA 2VFPA 3LJYA 1O8MA 3GQ9A 4KH3A 3VMVA 3VSUA 4C2LA 1KCCA 1OGMX 2BSPA 2O6WA 2QZAA 3NB2A 4NK6A 3SY2A 1TYVA 1OFEA 3B4NA 5C1CA 1O88A 2B0RA 1OOCA 3EQNA 4W8SA 1PE9A 1OGOX 1OFDA 1IB4A 2UVFA 4PMHA 1DBGA 2J8KA 3N6ZA 1DABA 3N90A 1CLWA 2O04A 2PECA 1TYXA 4Z05A 1TYWA 3SYJA 3VMWA 2X3HA 4YCQA 3SUCA 1QQ1A 3DU1X 4OZZA 2XC1A 1O8DA 1O8KA 2NSTA 2ODLA 2NTQA 2VFNA 2XTXA 4MR0A 1LLWA 4MXNA 1K4ZA 2YUHA 1WXRA 1RU4A 2EWEA 1O8FA 2BX6A 5DNSA 2NSPA 2VBEA 1EE6A 2F3LA 3BH7B 4XLCA 2IQ7A 3EQOA 4OJOA 2NTBA
chains in the Genus database with same CATH topology
2BM4A 3RIQA 2IOUG 1KQ5A 2VFOA 4OJPA 3PETA 4OJ5A 3BH6B 2BM7A 1QRCA 1TYVA 2BM5A 4OJLA 2VFMA 3AK5A 2B0RA 3P4GA 4OJ6A 2V5IA 2BM6A 3JX8A 3TH0A 3ML3A 1HF2A 1TYUA 3N6ZA 1DABA 3N90A 1CLWA 3SYJA 1TYXA 1QRBA 1TYWA 4OM9A 1QQ1A 1TSPA 2XC1A 2VFNA 2VFQA 4OPWA 2G0YA 1K4ZA 2YUHA 2J8IA 3SZEA 1QA2A 1WXRA 2BX6A 5JMCB 4JRAC 1QA1A 2W7ZA 5JLVC 3LYCA 2F3LA 2VFPA 3BH7B 3LJYA 4KH3A 1K8FA 1QA3A 4OJOA 3H09A 4V02C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RIQ A;  2IOU G;  2VFO A;  1QRC A;  1TYV A;  2VFM A;  3AK5 A;  2V5I A;  3TH0 A;  3ML3 A;  1TYU A;  1DAB A;  1CLW A;  3SYJ A;  1TYX A;  1QRB A;  1TYW A;  4OM9 A;  1QQ1 A;  1TSP A;  2XC1 A;  2VFN A;  2VFQ A;  1WXR A;  3SZE A;  1QA2 A;  2VFP A;  4KH3 A;  1QA1 A;  1QA3 A;  3H09 A; 
#chains in the Genus database with same CATH topology
 4YZA A;  2QX3 A;  1KTW A;  2BM4 A;  2IOU G;  2O0V A;  4XLE A;  2VFO A;  3ZSC A;  4YEL A;  1CZF A;  3SQV A;  1OFL A;  3PET A;  3T9G A;  3VST A;  2BM7 A;  4W8R A;  1QRC A;  1O8L A;  3GQ8 A;  4YZQ A;  4OJL A;  2VFM A;  3NAW A;  1K5C A;  2QYU A;  1H80 A;  4YC5 A;  1L1I A;  2VBM A;  2V5I A;  2XTY A;  1BHE A;  1XG2 A;  3B90 A;  4XLH A;  3KRG A;  3JX8 A;  3VSV A;  4YEJ A;  1IDK A;  5AMV A;  3WWG A;  1O8G A;  1QRB A;  1X0C A;  4OZY A;  1WMR A;  4URR A;  1VBL A;  4XOT A;  1O8I A;  4OPW A;  1QJV A;  2J8I A;  3SZE A;  4JRA C;  2W7Z A;  5JLV C;  1GQ8 A;  3LYC A;  2NZM A;  1BN8 A;  2PYH A;  5C1E A;  1K8F A;  4XN3 A;  1LM1 A;  3GRH A;  3H09 A;  1NHC A;  1EA0 A;  3RIQ A;  1KQ5 A;  4YFO A;  3GQA A;  4OJP A;  4XON A;  4XN0 A;  3BH6 B;  4EW9 A;  2O0W A;  4YZX A;  4W8Q A;  2O17 A;  2BM5 A;  1AIR A;  3FY3 A;  4OJ6 A;  1O8H A;  2BM6 A;  4XOR A;  2VJI A;  4XQF A;  3TH0 A;  1RWR A;  3ML3 A;  1HF2 A;  2NT6 A;  4Z03 A;  1TYU A;  4XOP A;  1O8E A;  3PSS A;  1JRG A;  2XT2 A;  4XR6 A;  1RMG A;  1O8J A;  2X6X A;  4XMY A;  2XTW A;  2XT4 A;  1QA2 A;  2NT9 A;  5JMC B;  4I84 A;  2X6Y A;  2X85 A;  4XNF A;  1OFM A;  1IDJ A;  1JTA A;  2UVE A;  1QA1 A;  1QA3 A;  4XKW A;  4V02 C;  2Z8G A;  4YZ0 A;  2VBK A;  4XKV A;  1HG8 A;  4U4B A;  4YEI A;  2INU A;  4OJ5 A;  1PXZ A;  4AVZ A;  4NK8 A;  2NTP A;  4U49 A;  1DBO A;  3GQ7 A;  4Z06 A;  3UW0 A;  3AK5 A;  4YDT A;  1KCD A;  2PYG A;  3P4G A;  1PLU A;  2QY1 A;  3ZPP A;  4XLF A;  4XM3 A;  3PSZ A;  1IA5 A;  1LLZ A;  4OM9 A;  4HWV A;  2X6W A;  1TSP A;  2QXZ A;  3JUR A;  2INV A;  2VFQ A;  4XL9 A;  2G0Y A;  2VJJ A;  1EZG A;  4W8T A;  1QCX A;  3LMW A;  3B8Y A;  2O1D A;  4XLA A;  2VFP A;  3LJY A;  1O8M A;  3GQ9 A;  4KH3 A;  3VMV A;  3VSU A;  4C2L A;  1KCC A;  1OGM X;  2BSP A;  2O6W A;  2QZA A;  3NB2 A;  4NK6 A;  3SY2 A;  1TYV A;  1OFE A;  3B4N A;  5C1C A;  1O88 A;  2B0R A;  1OOC A;  3EQN A;  4W8S A;  1PE9 A;  1OGO X;  1OFD A;  1IB4 A;  2UVF A;  4PMH A;  1DBG A;  2J8K A;  3N6Z A;  1DAB A;  3N90 A;  1CLW A;  2O04 A;  2PEC A;  1TYX A;  4Z05 A;  1TYW A;  3SYJ A;  3VMW A;  2X3H A;  4YCQ A;  3SUC A;  1QQ1 A;  3DU1 X;  4OZZ A;  2XC1 A;  1O8D A;  1O8K A;  2NST A;  2ODL A;  2NTQ A;  2VFN A;  2XTX A;  4MR0 A;  1LLW A;  4MXN A;  1K4Z A;  2YUH A;  1WXR A;  1RU4 A;  2EWE A;  1O8F A;  2BX6 A;  5DNS A;  2NSP A;  2VBE A;  1EE6 A;  2F3L A;  3BH7 B;  4XLC A;  2IQ7 A;  3EQO A;  4OJO A;  2NTB A; 
#chains in the Genus database with same CATH homology
 2BM4 A;  3RIQ A;  2IOU G;  1KQ5 A;  2VFO A;  4OJP A;  3PET A;  4OJ5 A;  3BH6 B;  2BM7 A;  1QRC A;  1TYV A;  2BM5 A;  4OJL A;  2VFM A;  3AK5 A;  2B0R A;  3P4G A;  4OJ6 A;  2V5I A;  2BM6 A;  3JX8 A;  3TH0 A;  3ML3 A;  1HF2 A;  1TYU A;  3N6Z A;  1DAB A;  3N90 A;  1CLW A;  3SYJ A;  1TYX A;  1QRB A;  1TYW A;  4OM9 A;  1QQ1 A;  1TSP A;  2XC1 A;  2VFN A;  2VFQ A;  4OPW A;  2G0Y A;  1K4Z A;  2YUH A;  2J8I A;  3SZE A;  1QA2 A;  1WXR A;  2BX6 A;  5JMC B;  4JRA C;  1QA1 A;  2W7Z A;  5JLV C;  3LYC A;  2F3L A;  2VFP A;  3BH7 B;  3LJY A;  4KH3 A;  1K8F A;  1QA3 A;  4OJO A;  3H09 A;  4V02 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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