The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
200
|
sequence length |
554
|
structure length |
552
|
Chain Sequence |
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
An essential serotype recognition pocket on phage P22 tailspike protein forces Salmonella enterica serovar Paratyphi A O-antigen fragments to bind as nonsolution conformers.
pubmed doi rcsb |
| molecule keywords |
Bifunctional tail protein
|
| molecule tags |
Viral protein
|
| source organism |
Enterobacteria phage p22
|
| total genus |
200
|
| structure length |
552
|
| sequence length |
554
|
| ec nomenclature |
ec
3.2.1.-: |
| pdb deposition date | 2011-08-18 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF09251 | PhageP22-tail | Salmonella phage P22 tail-spike |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | 3 Solenoid | Pectate Lyase C-like | Pectate Lyase C-like |
#chains in the Genus database with same CATH superfamily 3H09 A; 1QRB A; 1TYU A; 2V5I A; 1QA3 A; 2VFO A; 1QA2 A; 1QQ1 A; 1TYX A; 2VFN A; 1WXR A; 2IOU G; 3SZE A; 2VFQ A; 4KH3 A; 1TYW A; 1QA1 A; 4OM9 A; 1TSP A; 3RIQ A; 2XC1 A; 3AK5 A; 3TH0 A; 1CLW A; 3SYJ A; 2VFM A; 3ML3 A; 2VFP A; 1TYV A; 1DAB A; 1QRC A; #chains in the Genus database with same CATH topology 1BN8 A; 3H09 A; 2VBM A; 1QJV A; 1TYU A; 2O0W A; 3WWG A; 1IDJ A; 2INV A; 3B8Y A; 2O04 A; 2BM7 A; 4YDT A; 1CZF A; 1O8L A; 1K5C A; 1AIR A; 1K8F A; 2VFN A; 2Z8G A; 5C1E A; 2IOU G; 3FY3 A; 4YZX A; 4OPW A; 1TYW A; 1OFL A; 1QA1 A; 4W8S A; 3SQV A; 1H80 A; 4XOT A; 4NK6 A; 1BHE A; 4OJP A; 2BX6 A; 1CLW A; 2NT9 A; 2QX3 A; 3BH6 B; 4AVZ A; 4W8Q A; 4YZ0 A; 1EE6 A; 4OZZ A; 3ZPP A; 5DNS A; 3GQ8 A; 1TYV A; 3EQO A; 2QZA A; 2O6W A; 4YFO A; 2XTY A; 4NK8 A; 1DAB A; 2O1D A; 1JTA A; 4XMY A; 1OFE A; 3DU1 X; 4OJ6 A; 4Z06 A; 3PSZ A; 1O88 A; 2B0R A; 2YUH A; 3GQA A; 1X0C A; 4YCQ A; 4XLH A; 1IA5 A; 4OJ5 A; 2XTX A; 1RWR A; 1TYX A; 4Z03 A; 1GQ8 A; 2BSP A; 3SY2 A; 3VSU A; 3EQN A; 1OFD A; 1NHC A; 3LMW A; 2VFQ A; 5JLV C; 2G0Y A; 4W8T A; 2VJI A; 2NTB A; 2X6X A; 1EZG A; 1TSP A; 4OM9 A; 3LYC A; 3JX8 A; 3P4G A; 4XN3 A; 4YEL A; 4Z05 A; 2UVF A; 1OGO X; 1RU4 A; 2NTP A; 5JMC B; 1HF2 A; 4OZY A; 1OOC A; 3NB2 A; 1IB4 A; 1KCC A; 4YEJ A; 3TH0 A; 4OJL A; 1IDK A; 2X85 A; 2VFM A; 2XT2 A; 4W8R A; 1O8K A; 3T9G A; 3LJY A; 4XLC A; 3VMW A; 3VST A; 4XKW A; 2QXZ A; 4XOP A; 1O8J A; 4XM3 A; 1QRB A; 2V5I A; 4C2L A; 2X3H A; 4XLE A; 3N6Z A; 4MXN A; 2O17 A; 1XG2 A; 1QA3 A; 2VFO A; 1WMR A; 1QQ1 A; 2PYH A; 4XLF A; 1K4Z A; 2ODL A; 3UW0 A; 1L1I A; 2J8K A; 1QCX A; 2QY1 A; 3SZE A; 3ZSC A; 3B90 A; 3PET A; 3NAW A; 4KH3 A; 4XNF A; 2BM4 A; 2X6Y A; 1EA0 A; 2NT6 A; 1OFM A; 3RIQ A; 2XC1 A; 1O8F A; 3KRG A; 1DBG A; 3N90 A; 4XL9 A; 3VMV A; 2VJJ A; 4U49 A; 3B4N A; 4YZA A; 1O8G A; 2UVE A; 3SYJ A; 4PMH A; 4HWV A; 2VBK A; 2NZM A; 1QRC A; 1KTW A; 4XLA A; 2F3L A; 2PEC A; 4XKV A; 1DBO A; 2INU A; 2NST A; 2IQ7 A; 2PYG A; 4XN0 A; 4YC5 A; 4I84 A; 4U4B A; 4YZQ A; 1HG8 A; 2BM6 A; 5C1C A; 1KCD A; 3VSV A; 1O8I A; 1LLW A; 1QA2 A; 2XTW A; 1WXR A; 2EWE A; 2BM5 A; 2XT4 A; 1O8M A; 2QYU A; 1LM1 A; 1O8H A; 1VBL A; 2W7Z A; 3JUR A; 4OJO A; 2X6W A; 3PSS A; 4XON A; 2NTQ A; 3GQ9 A; 4URR A; 3BH7 B; 3SUC A; 1PLU A; 4JRA C; 2J8I A; 1JRG A; 4XOR A; 3AK5 A; 4XR6 A; 1OGM X; 3GRH A; 4YEI A; 4XQF A; 1RMG A; 5AMV A; 1PXZ A; 1O8D A; 4MR0 A; 1KQ5 A; 4V02 C; 1PE9 A; 2VBE A; 1O8E A; 3ML3 A; 3GQ7 A; 4EW9 A; 2O0V A; 1LLZ A; 2VFP A; 2NSP A; #chains in the Genus database with same CATH homology 2F3L A; 3H09 A; 1QRB A; 1TYU A; 2V5I A; 4OJ6 A; 2B0R A; 2YUH A; 3N6Z A; 2BM7 A; 2BM6 A; 1QA3 A; 2VFO A; 4OJ5 A; 1QA2 A; 1QQ1 A; 1K8F A; 1TYX A; 2VFN A; 1K4Z A; 1WXR A; 2BM5 A; 2IOU G; 3SZE A; 2VFQ A; 2W7Z A; 4OJO A; 2G0Y A; 4OPW A; 3PET A; 4KH3 A; 1TYW A; 1QA1 A; 2BM4 A; 1TSP A; 3BH7 B; 3LYC A; 3JX8 A; 3P4G A; 4OM9 A; 3RIQ A; 2XC1 A; 3N90 A; 4JRA C; 5JMC B; 1HF2 A; 2J8I A; 3AK5 A; 4OJP A; 2BX6 A; 3TH0 A; 1CLW A; 3SYJ A; 4OJL A; 4V02 C; 3BH6 B; 1KQ5 A; 2VFM A; 3LJY A; 3ML3 A; 2VFP A; 1TYV A; 5JLV C; 1DAB A; 1QRC A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
