3TH0A

P22 tailspike complexed with s.paratyphi o antigen octasaccharide
Total Genus 200
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
554
structure length
552
Chain Sequence
b'YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Bifunctional tail protein
publication title An essential serotype recognition pocket on phage P22 tailspike protein forces Salmonella enterica serovar Paratyphi A O-antigen fragments to bind as nonsolution conformers.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
total genus 200
structure length 552
sequence length 554
ec nomenclature ec 3.2.1.-:
pdb deposition date 2011-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3th0A00
1TSPA 3SZEA 3TH0A 1QQ1A 1QRCA 2V5IA 1CLWA 1QA3A 4KH3A 3RIQA 3SYJA 2VFNA 1QA2A 3ML3A 1TYXA 2VFOA 2VFPA 1TYVA 1DABA 2VFQA 1TYUA 4OM9A 1QRBA 1WXRA 2IOUG 1TYWA 3H09A 1QA1A 2XC1A 2VFMA 3AK5A
chains in the Genus database with same CATH superfamily
4YELA 1WMRA 3GQ8A 4XONA 4HWVA 2F3LA 4JRAC 2BM5A 2O04A 2BM4A 2QYUA 4YZQA 4OJ5A 3SZEA 4XM3A 1O8FA 4YCQA 1DBOA 1H80A 3DU1X 3WWGA 1QRCA 1IA5A 3T9GA 4OZZA 1O8IA 3VSVA 2QY1A 1OFMA 2NT6A 3PSSA 3JX8A 4W8QA 2J8IA 3BH7B 4XMYA 4Z03A 1XG2A 1OGOX 3UW0A 4YFOA 4Z06A 2W7ZA 4XOTA 2NSTA 5C1CA 3NAWA 4Z05A 3LYCA 1RWRA 1QA2A 4XKVA 1LLWA 4XOPA 3FY3A 2XTYA 1OOCA 1DABA 4XLCA 4U49A 2BM7A 4I84A 2QXZA 4OJLA 4YC5A 2BSPA 1OFEA 1QA1A 4YZ0A 1HG8A 2VJJA 3PSZA 4OPWA 4XQFA 3AK5A 2PYHA 1O8LA 1JTAA 2QX3A 3ZPPA 1OFDA 1K5CA 1BHEA 4XLEA 2NT9A 1O8KA 3B90A 4NK8A 4XN3A 4YDTA 1QQ1A 4U4BA 4YEJA 3BH6B 4MR0A 3P4GA 2VJIA 4C2LA 2PECA 4XLHA 3JURA 1KQ5A 3EQOA 2VBKA 3GRHA 1RU4A 2NSPA 3ZSCA 2PYGA 1BN8A 2VBEA 3LMWA 2XTXA 4KH3A 3SYJA 2VFNA 3NB2A 1IDJA 3ML3A 1LLZA 2O17A 4OJPA 4XORA 2VFPA 1O8GA 1EZGA 3GQAA 4OJOA 1TYUA 2QZAA 2YUHA 3VSUA 1QRBA 3KRGA 3N90A 1O8HA 1NHCA 3PETA 1O8EA 4NK6A 1WXRA 1EA0A 4W8SA 1OGMX 2VFMA 4W8RA 2XTWA 1QJVA 1X0CA 5DNSA 1IDKA 2EWEA 4XLAA 4XL9A 2UVFA 2G0YA 2X85A 2VBMA 5JLVC 2NZMA 1KCDA 1O8MA 4YZXA 4XNFA 3VMWA 1IB4A 4AVZA 3GQ9A 1PXZA 4V02C 1TYXA 5AMVA 4YEIA 1K4ZA 1TYVA 4YZAA 2INUA 2IQ7A 2VFQA 4EW9A 4W8TA 1L1IA 1CZFA 2IOUG 3H09A 1PE9A 1O8JA 1JRGA 2O1DA 2NTQA 1RMGA 1TSPA 2X6YA 1QCXA 3B4NA 1DBGA 2X6XA 4XR6A 3TH0A 2O6WA 2J8KA 1EE6A 3SQVA 1OFLA 2BX6A 2X3HA 4OZYA 2V5IA 4URRA 3GQ7A 1CLWA 4MXNA 3LJYA 2XT4A 2UVEA 4XLFA 3N6ZA 3VMVA 5C1EA 1GQ8A 1VBLA 2INVA 1LM1A 2NTPA 1PLUA 2X6WA 5JMCB 1QA3A 2B0RA 3RIQA 1HF2A 2ODLA 1K8FA 2O0WA 2O0VA 2VFOA 3EQNA 3SUCA 4XKWA 1O8DA 1O88A 2Z8GA 4XN0A 2BM6A 2NTBA 4OM9A 1KTWA 1AIRA 1TYWA 2XT2A 3B8YA 4OJ6A 4PMHA 1KCCA 2XC1A 3SY2A 3VSTA
chains in the Genus database with same CATH topology
1TSPA 2F3LA 4JRAC 2BM5A 2BM4A 3SZEA 4OJ5A 3TH0A 1QQ1A 1QRCA 3BH6B 3P4GA 2G0YA 2BX6A 5JLVC 2V5IA 1KQ5A 3JX8A 2J8IA 1CLWA 3BH7B 3LJYA 2W7ZA 3N6ZA 5JMCB 3LYCA 1QA3A 4KH3A 2B0RA 3RIQA 2VFNA 4V02C 3ML3A 1HF2A 1TYXA 3SYJA 1QA2A 1K8FA 2VFOA 4OJPA 1K4ZA 1TYVA 2VFPA 1DABA 4OJOA 2VFQA 2BM7A 1TYUA 2BM6A 2YUHA 4OM9A 4OJLA 1QRBA 3N90A 2IOUG 1TYWA 3H09A 3PETA 4OJ6A 1QA1A 1WXRA 2XC1A 2VFMA 4OPWA 3AK5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1TSP A;  3SZE A;  3TH0 A;  1QQ1 A;  1QRC A;  2V5I A;  1CLW A;  1QA3 A;  4KH3 A;  3RIQ A;  3SYJ A;  2VFN A;  1QA2 A;  3ML3 A;  1TYX A;  2VFO A;  2VFP A;  1TYV A;  1DAB A;  2VFQ A;  1TYU A;  4OM9 A;  1QRB A;  1WXR A;  2IOU G;  1TYW A;  3H09 A;  1QA1 A;  2XC1 A;  2VFM A;  3AK5 A; 
#chains in the Genus database with same CATH topology
 4YEL A;  1WMR A;  3GQ8 A;  4XON A;  4HWV A;  2F3L A;  4JRA C;  2BM5 A;  2O04 A;  2BM4 A;  2QYU A;  4YZQ A;  4OJ5 A;  3SZE A;  4XM3 A;  1O8F A;  4YCQ A;  1DBO A;  1H80 A;  3DU1 X;  3WWG A;  1QRC A;  1IA5 A;  3T9G A;  4OZZ A;  1O8I A;  3VSV A;  2QY1 A;  1OFM A;  2NT6 A;  3PSS A;  3JX8 A;  4W8Q A;  2J8I A;  3BH7 B;  4XMY A;  4Z03 A;  1XG2 A;  1OGO X;  3UW0 A;  4YFO A;  4Z06 A;  2W7Z A;  4XOT A;  2NST A;  5C1C A;  3NAW A;  4Z05 A;  3LYC A;  1RWR A;  1QA2 A;  4XKV A;  1LLW A;  4XOP A;  3FY3 A;  2XTY A;  1OOC A;  1DAB A;  4XLC A;  4U49 A;  2BM7 A;  4I84 A;  2QXZ A;  4OJL A;  4YC5 A;  2BSP A;  1OFE A;  1QA1 A;  4YZ0 A;  1HG8 A;  2VJJ A;  3PSZ A;  4OPW A;  4XQF A;  3AK5 A;  2PYH A;  1O8L A;  1JTA A;  2QX3 A;  3ZPP A;  1OFD A;  1K5C A;  1BHE A;  4XLE A;  2NT9 A;  1O8K A;  3B90 A;  4NK8 A;  4XN3 A;  4YDT A;  1QQ1 A;  4U4B A;  4YEJ A;  3BH6 B;  4MR0 A;  3P4G A;  2VJI A;  4C2L A;  2PEC A;  4XLH A;  3JUR A;  1KQ5 A;  3EQO A;  2VBK A;  3GRH A;  1RU4 A;  2NSP A;  3ZSC A;  2PYG A;  1BN8 A;  2VBE A;  3LMW A;  2XTX A;  4KH3 A;  3SYJ A;  2VFN A;  3NB2 A;  1IDJ A;  3ML3 A;  1LLZ A;  2O17 A;  4OJP A;  4XOR A;  2VFP A;  1O8G A;  1EZG A;  3GQA A;  4OJO A;  1TYU A;  2QZA A;  2YUH A;  3VSU A;  1QRB A;  3KRG A;  3N90 A;  1O8H A;  1NHC A;  3PET A;  1O8E A;  4NK6 A;  1WXR A;  1EA0 A;  4W8S A;  1OGM X;  2VFM A;  4W8R A;  2XTW A;  1QJV A;  1X0C A;  5DNS A;  1IDK A;  2EWE A;  4XLA A;  4XL9 A;  2UVF A;  2G0Y A;  2X85 A;  2VBM A;  5JLV C;  2NZM A;  1KCD A;  1O8M A;  4YZX A;  4XNF A;  3VMW A;  1IB4 A;  4AVZ A;  3GQ9 A;  1PXZ A;  4V02 C;  1TYX A;  5AMV A;  4YEI A;  1K4Z A;  1TYV A;  4YZA A;  2INU A;  2IQ7 A;  2VFQ A;  4EW9 A;  4W8T A;  1L1I A;  1CZF A;  2IOU G;  3H09 A;  1PE9 A;  1O8J A;  1JRG A;  2O1D A;  2NTQ A;  1RMG A;  1TSP A;  2X6Y A;  1QCX A;  3B4N A;  1DBG A;  2X6X A;  4XR6 A;  3TH0 A;  2O6W A;  2J8K A;  1EE6 A;  3SQV A;  1OFL A;  2BX6 A;  2X3H A;  4OZY A;  2V5I A;  4URR A;  3GQ7 A;  1CLW A;  4MXN A;  3LJY A;  2XT4 A;  2UVE A;  4XLF A;  3N6Z A;  3VMV A;  5C1E A;  1GQ8 A;  1VBL A;  2INV A;  1LM1 A;  2NTP A;  1PLU A;  2X6W A;  5JMC B;  1QA3 A;  2B0R A;  3RIQ A;  1HF2 A;  2ODL A;  1K8F A;  2O0W A;  2O0V A;  2VFO A;  3EQN A;  3SUC A;  4XKW A;  1O8D A;  1O88 A;  2Z8G A;  4XN0 A;  2BM6 A;  2NTB A;  4OM9 A;  1KTW A;  1AIR A;  1TYW A;  2XT2 A;  3B8Y A;  4OJ6 A;  4PMH A;  1KCC A;  2XC1 A;  3SY2 A;  3VST A; 
#chains in the Genus database with same CATH homology
 1TSP A;  2F3L A;  4JRA C;  2BM5 A;  2BM4 A;  3SZE A;  4OJ5 A;  3TH0 A;  1QQ1 A;  1QRC A;  3BH6 B;  3P4G A;  2G0Y A;  2BX6 A;  5JLV C;  2V5I A;  1KQ5 A;  3JX8 A;  2J8I A;  1CLW A;  3BH7 B;  3LJY A;  2W7Z A;  3N6Z A;  5JMC B;  3LYC A;  1QA3 A;  4KH3 A;  2B0R A;  3RIQ A;  2VFN A;  4V02 C;  3ML3 A;  1HF2 A;  1TYX A;  3SYJ A;  1QA2 A;  1K8F A;  2VFO A;  4OJP A;  1K4Z A;  1TYV A;  2VFP A;  1DAB A;  4OJO A;  2VFQ A;  2BM7 A;  1TYU A;  2BM6 A;  2YUH A;  4OM9 A;  4OJL A;  1QRB A;  3N90 A;  2IOU G;  1TYW A;  3H09 A;  3PET A;  4OJ6 A;  1QA1 A;  1WXR A;  2XC1 A;  2VFM A;  4OPW A;  3AK5 A; 
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