3TH0A

P22 tailspike complexed with s.paratyphi o antigen octasaccharide
Total Genus 200
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
200
sequence length
554
structure length
552
Chain Sequence
YSIEADKKFKYSVKLSDYPTLQDAASAAVDGLLIDRDYNFYGGETVDFGGKVLTIECKAKFIGDGNLIFTKLGKGSRIAGVFMESTTTPWVIKPWTDDNQWLTDAAAVVATLKQSKTDGYQPTVSDYVKFPGIETLLPPNAKGQNITSTLEIRECIGVEVHRASGLMAGFLFRGCHFCKMVDANNPSGGKDGIITFENLSGDWGKGNYVIGGRTSYGSVSSAQFLRNNGGFERDGGVIGFTSYRAGESGVKTWQGTVGSTTSRNYNLQFRDSVVIYPVWDGFDLGADTDMNPELDRPGDYPITQYPLHQLPLNHLIDNLLVRGALGVGFGMDGKGMYVSNITVEDCAGSGAYLLTHESVFTNIAIIDTNTKDFQANQIYISGACRVNGLRLIGIRSGQSLTIDAPNSTVSGITGMVDPSRINVANLAEEGLGNIRANSFGYDSAAIKLRIHKLSKTLDSGALYSHINGGAGSGSAYTQLTAISGSTPDAVSLKVNHKDCRGAEIPFVPDIASDDFIKDSSCFLPYWENNSTSLKALVKKPNGELVRLTLATL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords Bifunctional tail protein
publication title An essential serotype recognition pocket on phage P22 tailspike protein forces Salmonella enterica serovar Paratyphi A O-antigen fragments to bind as nonsolution conformers.
pubmed doi rcsb
source organism Enterobacteria phage p22
molecule tags Viral protein
total genus 200
structure length 552
sequence length 554
ec nomenclature ec 3.2.1.-:
pdb deposition date 2011-08-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF09251 PhageP22-tail Salmonella phage P22 tail-spike
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.20 Mainly Beta 3 Solenoid Pectate Lyase C-like Pectate Lyase C-like 3th0A00
2VFQA 2XC1A 3AK5A 1QA2A 1TSPA 1WXRA 1TYWA 1QA3A 2VFMA 3ML3A 1QQ1A 1TYXA 1QA1A 1QRCA 2IOUG 3H09A 3SZEA 1QRBA 2V5IA 4KH3A 1TYVA 2VFPA 1DABA 3TH0A 1CLWA 4OM9A 2VFOA 2VFNA 1TYUA 3RIQA 3SYJA
chains in the Genus database with same CATH superfamily
1O8GA 4YZAA 4YZXA 3AK5A 4AVZA 1QA2A 1TSPA 1JTAA 1OGMX 2IQ7A 1AIRA 1KQ5A 2VJIA 4W8TA 1QRCA 3SQVA 2X6WA 2VBEA 1OFLA 4Z05A 4URRA 4MXNA 1OFMA 2BM6A 4W8QA 3N90A 2VJJA 3GRHA 2X85A 3EQNA 1BN8A 1O8HA 2NTQA 1IDJA 4XOTA 4YEJA 1PXZA 1DBOA 2O17A 2V5IA 3LMWA 3N6ZA 1K4ZA 1CZFA 2X3HA 3P4GA 2QX3A 4HWVA 4OJ5A 4YFOA 1HG8A 2X6YA 1O8JA 1CLWA 1IDKA 4XLAA 5JMCB 5AMVA 1KCDA 4JRAC 2NSTA 2PYGA 2BM7A 2XC1A 1WMRA 1K5CA 2J8KA 4YZ0A 3VSTA 1WXRA 1TYWA 2BSPA 1QJVA 4Z03A 1JRGA 1QQ1A 1KTWA 2NSPA 2Z8GA 3GQ9A 4XKVA 2G0YA 1O8FA 2INVA 3SY2A 3B90A 1L1IA 4V02C 2IOUG 2NZMA 1O88A 4U4BA 2BM4A 4PMHA 5C1CA 2VBMA 4Z06A 1QRBA 4YEIA 5C1EA 4KH3A 1TYVA 1RU4A 3NAWA 4XOPA 2ODLA 4OJOA 2NT9A 1RWRA 1O8MA 2YUHA 4YDTA 2XT4A 4W8SA 3PSZA 5JLVC 3LJYA 2XTYA 1EZGA 1PLUA 4XLEA 2BX6A 1NHCA 4YZQA 2QXZA 1XG2A 5DNSA 2NT6A 2XTXA 2NTBA 3GQ8A 3FY3A 4W8RA 4XKWA 1QA3A 1OFDA 2O1DA 2J8IA 1LM1A 1TYXA 2EWEA 2UVEA 2XTWA 3B8YA 2QYUA 3VSUA 3UW0A 2X6XA 4XQFA 1O8KA 3NB2A 4XMYA 3ZPPA 1IB4A 2PECA 2UVFA 4NK8A 1IA5A 3SZEA 1EE6A 3KRGA 3JX8A 4U49A 3VMWA 4EW9A 4OJ6A 4YELA 3GQAA 2XT2A 3B4NA 4NK6A 2W7ZA 4XLCA 3SUCA 1O8LA 4XN0A 4C2LA 1QCXA 1PE9A 2PYHA 3BH7B 4OJPA 1O8IA 1O8EA 2QZAA 4OPWA 4YCQA 1DABA 4OJLA 3ZSCA 1OGOX 3VMVA 3TH0A 4OM9A 2VFOA 4XNFA 2VFNA 3EQOA 4XLHA 2QY1A 1X0CA 1LLWA 3BH6B 3SYJA 4YC5A 4OZYA 2VFQA 4XR6A 1RMGA 4XORA 2B0RA 1H80A 3JURA 2VFMA 1OFEA 3ML3A 4XM3A 1QA1A 3DU1X 1BHEA 1OOCA 2VBKA 4I84A 2O04A 2O0VA 3H09A 3PSSA 2O6WA 1HF2A 1O8DA 3WWGA 1KCCA 1VBLA 3PETA 1EA0A 2VFPA 4MR0A 1K8FA 4XN3A 2F3LA 1DBGA 1LLZA 2BM5A 2NTPA 3GQ7A 4XONA 3T9GA 1GQ8A 2INUA 1TYUA 2O0WA 4OZZA 4XLFA 3RIQA 3VSVA 3LYCA 4XL9A
chains in the Genus database with same CATH topology
2VFQA 2XC1A 3AK5A 1QA2A 1TSPA 2B0RA 1WXRA 1TYWA 1KQ5A 1QA3A 2VFMA 3ML3A 1QQ1A 1TYXA 2J8IA 1QA1A 1QRCA 2G0YA 4V02C 2IOUG 2BM6A 3H09A 3SZEA 2BM4A 3JX8A 3N90A 4OJ6A 1HF2A 1QRBA 2W7ZA 3BH7B 3P4GA 3N6ZA 2V5IA 3PETA 4OJPA 1K4ZA 1TYVA 4KH3A 4OPWA 2VFPA 4OJ5A 1K8FA 4OJLA 2F3LA 4OJOA 3TH0A 2BM5A 2YUHA 1DABA 1CLWA 4OM9A 2VFOA 5JLVC 2VFNA 1TYUA 5JMCB 3LJYA 3RIQA 4JRAC 3LYCA 2BX6A 2BM7A 3SYJA 3BH6B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2VFQ A;  2XC1 A;  3AK5 A;  1QA2 A;  1TSP A;  1WXR A;  1TYW A;  1QA3 A;  2VFM A;  3ML3 A;  1QQ1 A;  1TYX A;  1QA1 A;  1QRC A;  2IOU G;  3H09 A;  3SZE A;  1QRB A;  2V5I A;  4KH3 A;  1TYV A;  2VFP A;  1DAB A;  3TH0 A;  1CLW A;  4OM9 A;  2VFO A;  2VFN A;  1TYU A;  3RIQ A;  3SYJ A; 
#chains in the Genus database with same CATH topology
 1O8G A;  4YZA A;  4YZX A;  3AK5 A;  4AVZ A;  1QA2 A;  1TSP A;  1JTA A;  1OGM X;  2IQ7 A;  1AIR A;  1KQ5 A;  2VJI A;  4W8T A;  1QRC A;  3SQV A;  2X6W A;  2VBE A;  1OFL A;  4Z05 A;  4URR A;  4MXN A;  1OFM A;  2BM6 A;  4W8Q A;  3N90 A;  2VJJ A;  3GRH A;  2X85 A;  3EQN A;  1BN8 A;  1O8H A;  2NTQ A;  1IDJ A;  4XOT A;  4YEJ A;  1PXZ A;  1DBO A;  2O17 A;  2V5I A;  3LMW A;  3N6Z A;  1K4Z A;  1CZF A;  2X3H A;  3P4G A;  2QX3 A;  4HWV A;  4OJ5 A;  4YFO A;  1HG8 A;  2X6Y A;  1O8J A;  1CLW A;  1IDK A;  4XLA A;  5JMC B;  5AMV A;  1KCD A;  4JRA C;  2NST A;  2PYG A;  2BM7 A;  2XC1 A;  1WMR A;  1K5C A;  2J8K A;  4YZ0 A;  3VST A;  1WXR A;  1TYW A;  2BSP A;  1QJV A;  4Z03 A;  1JRG A;  1QQ1 A;  1KTW A;  2NSP A;  2Z8G A;  3GQ9 A;  4XKV A;  2G0Y A;  1O8F A;  2INV A;  3SY2 A;  3B90 A;  1L1I A;  4V02 C;  2IOU G;  2NZM A;  1O88 A;  4U4B A;  2BM4 A;  4PMH A;  5C1C A;  2VBM A;  4Z06 A;  1QRB A;  4YEI A;  5C1E A;  4KH3 A;  1TYV A;  1RU4 A;  3NAW A;  4XOP A;  2ODL A;  4OJO A;  2NT9 A;  1RWR A;  1O8M A;  2YUH A;  4YDT A;  2XT4 A;  4W8S A;  3PSZ A;  5JLV C;  3LJY A;  2XTY A;  1EZG A;  1PLU A;  4XLE A;  2BX6 A;  1NHC A;  4YZQ A;  2QXZ A;  1XG2 A;  5DNS A;  2NT6 A;  2XTX A;  2NTB A;  3GQ8 A;  3FY3 A;  4W8R A;  4XKW A;  1QA3 A;  1OFD A;  2O1D A;  2J8I A;  1LM1 A;  1TYX A;  2EWE A;  2UVE A;  2XTW A;  3B8Y A;  2QYU A;  3VSU A;  3UW0 A;  2X6X A;  4XQF A;  1O8K A;  3NB2 A;  4XMY A;  3ZPP A;  1IB4 A;  2PEC A;  2UVF A;  4NK8 A;  1IA5 A;  3SZE A;  1EE6 A;  3KRG A;  3JX8 A;  4U49 A;  3VMW A;  4EW9 A;  4OJ6 A;  4YEL A;  3GQA A;  2XT2 A;  3B4N A;  4NK6 A;  2W7Z A;  4XLC A;  3SUC A;  1O8L A;  4XN0 A;  4C2L A;  1QCX A;  1PE9 A;  2PYH A;  3BH7 B;  4OJP A;  1O8I A;  1O8E A;  2QZA A;  4OPW A;  4YCQ A;  1DAB A;  4OJL A;  3ZSC A;  1OGO X;  3VMV A;  3TH0 A;  4OM9 A;  2VFO A;  4XNF A;  2VFN A;  3EQO A;  4XLH A;  2QY1 A;  1X0C A;  1LLW A;  3BH6 B;  3SYJ A;  4YC5 A;  4OZY A;  2VFQ A;  4XR6 A;  1RMG A;  4XOR A;  2B0R A;  1H80 A;  3JUR A;  2VFM A;  1OFE A;  3ML3 A;  4XM3 A;  1QA1 A;  3DU1 X;  1BHE A;  1OOC A;  2VBK A;  4I84 A;  2O04 A;  2O0V A;  3H09 A;  3PSS A;  2O6W A;  1HF2 A;  1O8D A;  3WWG A;  1KCC A;  1VBL A;  3PET A;  1EA0 A;  2VFP A;  4MR0 A;  1K8F A;  4XN3 A;  2F3L A;  1DBG A;  1LLZ A;  2BM5 A;  2NTP A;  3GQ7 A;  4XON A;  3T9G A;  1GQ8 A;  2INU A;  1TYU A;  2O0W A;  4OZZ A;  4XLF A;  3RIQ A;  3VSV A;  3LYC A;  4XL9 A; 
#chains in the Genus database with same CATH homology
 2VFQ A;  2XC1 A;  3AK5 A;  1QA2 A;  1TSP A;  2B0R A;  1WXR A;  1TYW A;  1KQ5 A;  1QA3 A;  2VFM A;  3ML3 A;  1QQ1 A;  1TYX A;  2J8I A;  1QA1 A;  1QRC A;  2G0Y A;  4V02 C;  2IOU G;  2BM6 A;  3H09 A;  3SZE A;  2BM4 A;  3JX8 A;  3N90 A;  4OJ6 A;  1HF2 A;  1QRB A;  2W7Z A;  3BH7 B;  3P4G A;  3N6Z A;  2V5I A;  3PET A;  4OJP A;  1K4Z A;  1TYV A;  4KH3 A;  4OPW A;  2VFP A;  4OJ5 A;  1K8F A;  4OJL A;  2F3L A;  4OJO A;  3TH0 A;  2BM5 A;  2YUH A;  1DAB A;  1CLW A;  4OM9 A;  2VFO A;  5JLV C;  2VFN A;  1TYU A;  5JMC B;  3LJY A;  3RIQ A;  4JRA C;  3LYC A;  2BX6 A;  2BM7 A;  3SYJ A;  3BH6 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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