3THMF

Crystal structure of fas receptor extracellular domain in complex with fab ep6b_b01
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
84
structure length
77
Chain Sequence
LHHDGQFCHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHFSSKCRRCRLCGHGLEVEINCTRTQNTKCRCC
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Immune system
molecule keywords Fab EP6b_B01, light chain
publication title A series of Fas receptor agonist antibodies that demonstrate an inverse correlation between affinity and potency.
pubmed doi rcsb
source organism Homo sapiens
total genus 13
structure length 77
sequence length 84
ec nomenclature
pdb deposition date 2011-08-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3thmF00
1EXTA 1JMAB 2UWIA 3MI8D 4MSVB 4FHQA 2AW2B 4M4RA 1D4VA 5L36B 1DU3A 3U3PA 3WVTA 4YN0A 3TJEF 3ME2R 3U3QA 3ALQR 2H9GR 3IJ2X 1ZA3R 4RSUD 5IHLA 4OD2S 3URFZ 3U3TA 4BK5A 4KGGC 1SG1X 4KGQC 4I9XC 3THMF 2HEVR 4E4DR 4BK4A 4MXWR 5BNQR 2X10A 3ME4A 3QO4A 4J6GC 1FT4A 3QBQB 3BUKC 4M4PA 3K51B 5CIRE 1TNRR 3U3VA 2HEYR 5DMJA 3FL7A 3QD6R 3U3SA 3MHDD 1D0GR 1NCFA 4GIQR 4N90R 3X3FA 3MBWA
chains in the Genus database with same CATH superfamily
1EXTA 1JMAB 2UWIA 3MI8D 4MSVB 2E4VA 2E4WA 4FHQA 2AW2B 4M4RA 1D4VA 2QR6A 5L36B 1DU3A 3U3PA 3WVTA 4YN0A 3TJEF 3ME2R 3U3QA 3ALQR 2H9GR 3IJ2X 1ZA3R 4RSUD 5IHLA 4OD2S 3URFZ 3U3TA 4BK5A 4KGGC 1SG1X 4KGQC 4I9XC 3THMF 2HEVR 4E4DR 4BK4A 4MXWR 5BNQR 2X10A 2E4UA 3ME4A 3QO4A 4J6GC 1FT4A 3QBQB 3BUKC 4M4PA 3K51B 5CIRE 1TNRR 3U3VA 2HEYR 5DMJA 2E4XA 3FL7A 3QD6R 3U3SA 3MHDD 1NCFA 1D0GR 2E4YA 4GIQR 4N90R 3X3FA 3MBWA
chains in the Genus database with same CATH topology
1EXTA 1JMAB 2UWIA 3MI8D 4MSVB 4FHQA 2AW2B 4M4RA 1D4VA 5L36B 1DU3A 3U3PA 3WVTA 4YN0A 3TJEF 3ME2R 3U3QA 3ALQR 2H9GR 3IJ2X 1ZA3R 4RSUD 5IHLA 4OD2S 3URFZ 3U3TA 4BK5A 4KGGC 1SG1X 4KGQC 4I9XC 3THMF 2HEVR 4E4DR 4BK4A 4MXWR 5BNQR 2X10A 3ME4A 3QO4A 4J6GC 1FT4A 3QBQB 3BUKC 4M4PA 3K51B 5CIRE 1TNRR 3U3VA 2HEYR 5DMJA 3FL7A 3QD6R 3U3SA 3MHDD 1D0GR 1NCFA 4GIQR 4N90R 3X3FA 3MBWA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EXT A;  1JMA B;  2UWI A;  3MI8 D;  4MSV B;  4FHQ A;  2AW2 B;  4M4R A;  1D4V A;  5L36 B;  1DU3 A;  3U3P A;  3WVT A;  4YN0 A;  3TJE F;  3ME2 R;  3U3Q A;  3ALQ R;  2H9G R;  3IJ2 X;  1ZA3 R;  4RSU D;  5IHL A;  4OD2 S;  3URF Z;  3U3T A;  4BK5 A;  4KGG C;  1SG1 X;  4KGQ C;  4I9X C;  3THM F;  2HEV R;  4E4D R;  4BK4 A;  4MXW R;  5BNQ R;  2X10 A;  3ME4 A;  3QO4 A;  4J6G C;  1FT4 A;  3QBQ B;  3BUK C;  4M4P A;  3K51 B;  5CIR E;  1TNR R;  3U3V A;  2HEY R;  5DMJ A;  3FL7 A;  3QD6 R;  3U3S A;  3MHD D;  1D0G R;  1NCF A;  4GIQ R;  4N90 R;  3X3F A;  3MBW A; 
#chains in the Genus database with same CATH topology
 1EXT A;  1JMA B;  2UWI A;  3MI8 D;  4MSV B;  2E4V A;  2E4W A;  4FHQ A;  2AW2 B;  4M4R A;  1D4V A;  2QR6 A;  5L36 B;  1DU3 A;  3U3P A;  3WVT A;  4YN0 A;  3TJE F;  3ME2 R;  3U3Q A;  3ALQ R;  2H9G R;  3IJ2 X;  1ZA3 R;  4RSU D;  5IHL A;  4OD2 S;  3URF Z;  3U3T A;  4BK5 A;  4KGG C;  1SG1 X;  4KGQ C;  4I9X C;  3THM F;  2HEV R;  4E4D R;  4BK4 A;  4MXW R;  5BNQ R;  2X10 A;  2E4U A;  3ME4 A;  3QO4 A;  4J6G C;  1FT4 A;  3QBQ B;  3BUK C;  4M4P A;  3K51 B;  5CIR E;  1TNR R;  3U3V A;  2HEY R;  5DMJ A;  2E4X A;  3FL7 A;  3QD6 R;  3U3S A;  3MHD D;  1NCF A;  1D0G R;  2E4Y A;  4GIQ R;  4N90 R;  3X3F A;  3MBW A; 
#chains in the Genus database with same CATH homology
 1EXT A;  1JMA B;  2UWI A;  3MI8 D;  4MSV B;  4FHQ A;  2AW2 B;  4M4R A;  1D4V A;  5L36 B;  1DU3 A;  3U3P A;  3WVT A;  4YN0 A;  3TJE F;  3ME2 R;  3U3Q A;  3ALQ R;  2H9G R;  3IJ2 X;  1ZA3 R;  4RSU D;  5IHL A;  4OD2 S;  3URF Z;  3U3T A;  4BK5 A;  4KGG C;  1SG1 X;  4KGQ C;  4I9X C;  3THM F;  2HEV R;  4E4D R;  4BK4 A;  4MXW R;  5BNQ R;  2X10 A;  3ME4 A;  3QO4 A;  4J6G C;  1FT4 A;  3QBQ B;  3BUK C;  4M4P A;  3K51 B;  5CIR E;  1TNR R;  3U3V A;  2HEY R;  5DMJ A;  3FL7 A;  3QD6 R;  3U3S A;  3MHD D;  1D0G R;  1NCF A;  4GIQ R;  4N90 R;  3X3F A;  3MBW A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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