The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
105
|
sequence length |
306
|
structure length |
283
|
Chain Sequence |
TTVLLDEAVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAKTIDDPRFSIIHGPFSALGEYVAERDLIGKIDGILLDLGVSSPQLDDAERGFSFMRDGPLDMRMDPTRGQSAAEWLQTAEEADIAWVLKTYGEERFAKRIARAIVERNREQPMTRTKELAEVVAAATPVKHPATRTFQAVRIWVNSELEEIEQALKSSLNVLAPGGRLSIISFHSLEDRIVKRFMRENSRGRQLRALGKLMPGEEEVAENPRARSSVLRIAERTNA
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal and solution structures of methyltransferase RsmH provide basis for methylation of C1402 in 16S rRNA.
pubmed doi rcsb |
| source organism |
Escherichia coli
|
| molecule tags |
Transferase
|
| molecule keywords |
Ribosomal RNA small subunit methyltransferase H
|
| total genus |
105
|
| structure length |
283
|
| sequence length |
306
|
| ec nomenclature |
ec
2.1.1.199: 16S rRNA (cytosine(1402)-N(4))-methyltransferase. |
| pdb deposition date | 2011-08-25 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF01795 | Methyltransf_5 | MraW methylase family |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Alpha | Orthogonal Bundle | DNA polymerase; domain 1 | Putative methyltransferase TM0872, insert domain | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Rossmann fold | Vaccinia Virus protein VP39 |
