3TO0A

Crystal structure of mus musculus iodotyrosine deiodinase (iyd) c217a, c239a bound to fmn
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
219
structure length
184
Chain Sequence
EHIPFSHTRYPEQEMRMRSQEFYELLNKRRSVRFISSEHVPMEVIENVIKAAGTAPSGAHTEPWTFVVVKDPDMKHKIREIIEEEEEIKEYLDTAPVLILIFKQVYNEISVSIAAGLLLAALQNAGLVTVTTTPLNAGPRLRVLLGRPSHEKLLVLLPVGYPSRDATVPDLKRKALDQIMVTVH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Iodotyrosine deiodinase 1
publication title Expression of a soluble form of iodotyrosine deiodinase for active site characterization by engineering the native membrane protein from Mus musculus.
pubmed doi rcsb
source organism Mus musculus
total genus 54
structure length 184
sequence length 219
chains with identical sequence B
ec nomenclature ec 1.21.1.1: Iodotyrosine deiodinase.
pdb deposition date 2011-09-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00881 Nitroreductase Nitroreductase family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.109.10 Alpha Beta 3-Layer(aba) Sandwich NADH Oxidase NADH Oxidase 3to0A00
3EO8A 2ISLA 4BNBA 3GAGA 3X21A 2I7HA 3EOFA 3GR3A 3GB5A 1YWQA 2ISKA 1YLUA 4XOOA 1F5VA 5KO7A 3HJ9A 4EO3A 4URPA 2YMVA 3X22A 2WQFA 3GE5A 1ICVA 3G14A 3K6HA 1ICRA 3GBHA 4TTCA 2WZVA 5KRDA 3GE6A 1YKIA 2ISJA 3EK3A 4TTBA 1BKJA 4DN2A 3E10A 3TNZA 1YLRA 2H0UA 1ICUA 3KOQA 2IFAA 4QLXA 3QDLA 1OOQA 5HDJA 3GFAA 1VFRA 1DS7A 1VKWA 3BM2A 4BN7A 5KO8A 1OO5A 2BKJA 2WZWA 2HAYA 3PXVA 3HOIA 1OO6A 3EO7A 3GFDA 1OONA 4QLYA 4G8SA 5J6CA 1NOXA 3TO0A 2FREA 3GH8A 3N2SA 3HZNA 2R01A 1NECA 3KWKA 1V5YA 3OF4A 4BN6A 3BM1A 5HEIA 4BN8A 1V5ZA 3E39A 1KQDA 4BN9A 3M5KA 4XOQA 2B67A 3BEMA 1IDTA 1ZCHA 3H4OA 1KQCA 4XOMA 1KQBA
chains in the Genus database with same CATH superfamily
3EO8A 2ISLA 4BNBA 3GAGA 3X21A 2I7HA 3EOFA 3GR3A 3GB5A 1YWQA 2ISKA 1YLUA 4XOOA 1F5VA 5KO7A 3HJ9A 4EO3A 4URPA 2YMVA 3X22A 2WQFA 3GE5A 1ICVA 3G14A 3K6HA 1ICRA 3GBHA 4TTCA 2WZVA 5KRDA 3GE6A 1YKIA 2ISJA 3EK3A 4TTBA 1BKJA 1J6RA 4DN2A 3E10A 3TNZA 1YLRA 2H0UA 1ICUA 3KOQA 2IFAA 4QLXA 3QDLA 1OOQA 5HDJA 3GFAA 1VFRA 1DS7A 1VKWA 3BM2A 4BN7A 5KO8A 1OO5A 2BKJA 2WZWA 2HAYA 3PXVA 3HOIA 1OO6A 3EO7A 3GFDA 1OONA 4QLYA 4G8SA 5J6CA 1NOXA 3TO0A 2FREA 3GH8A 3N2SA 3HZNA 2R01A 1NECA 3KWKA 1V5YA 3OF4A 4BN6A 3BM1A 5HEIA 4BN8A 1V5ZA 3E39A 1KQDA 4BN9A 3M5KA 4XOQA 2B67A 3BEMA 1IDTA 1ZCHA 3H4OA 1KQCA 4XOMA 1KQBA
chains in the Genus database with same CATH topology
3EO8A 2ISLA 4BNBA 3GAGA 3X21A 2I7HA 3EOFA 3GR3A 3GB5A 1YWQA 2ISKA 1YLUA 4XOOA 1F5VA 5KO7A 3HJ9A 4EO3A 4URPA 2YMVA 3X22A 2WQFA 3GE5A 1ICVA 3G14A 3K6HA 1ICRA 3GBHA 4TTCA 2WZVA 5KRDA 3GE6A 1YKIA 2ISJA 3EK3A 4TTBA 1BKJA 1J6RA 4DN2A 3E10A 3TNZA 1YLRA 2H0UA 1ICUA 3KOQA 2IFAA 4QLXA 3QDLA 1OOQA 5HDJA 3GFAA 1VFRA 1DS7A 1VKWA 3BM2A 4BN7A 5KO8A 1OO5A 2BKJA 2WZWA 2HAYA 3PXVA 3HOIA 1OO6A 3EO7A 3GFDA 1OONA 4QLYA 4G8SA 5J6CA 1NOXA 3TO0A 2FREA 3GH8A 3N2SA 3HZNA 2R01A 1NECA 3KWKA 1V5YA 3OF4A 4BN6A 3BM1A 5HEIA 4BN8A 1V5ZA 3E39A 1KQDA 4BN9A 3M5KA 4XOQA 2B67A 3BEMA 1IDTA 1ZCHA 3H4OA 1KQCA 4XOMA 1KQBA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3EO8 A;  2ISL A;  4BNB A;  3GAG A;  3X21 A;  2I7H A;  3EOF A;  3GR3 A;  3GB5 A;  1YWQ A;  2ISK A;  1YLU A;  4XOO A;  1F5V A;  5KO7 A;  3HJ9 A;  4EO3 A;  4URP A;  2YMV A;  3X22 A;  2WQF A;  3GE5 A;  1ICV A;  3G14 A;  3K6H A;  1ICR A;  3GBH A;  4TTC A;  2WZV A;  5KRD A;  3GE6 A;  1YKI A;  2ISJ A;  3EK3 A;  4TTB A;  1BKJ A;  4DN2 A;  3E10 A;  3TNZ A;  1YLR A;  2H0U A;  1ICU A;  3KOQ A;  2IFA A;  4QLX A;  3QDL A;  1OOQ A;  5HDJ A;  3GFA A;  1VFR A;  1DS7 A;  1VKW A;  3BM2 A;  4BN7 A;  5KO8 A;  1OO5 A;  2BKJ A;  2WZW A;  2HAY A;  3PXV A;  3HOI A;  1OO6 A;  3EO7 A;  3GFD A;  1OON A;  4QLY A;  4G8S A;  5J6C A;  1NOX A;  3TO0 A;  2FRE A;  3GH8 A;  3N2S A;  3HZN A;  2R01 A;  1NEC A;  3KWK A;  1V5Y A;  3OF4 A;  4BN6 A;  3BM1 A;  5HEI A;  4BN8 A;  1V5Z A;  3E39 A;  1KQD A;  4BN9 A;  3M5K A;  4XOQ A;  2B67 A;  3BEM A;  1IDT A;  1ZCH A;  3H4O A;  1KQC A;  4XOM A;  1KQB A; 
#chains in the Genus database with same CATH topology
 3EO8 A;  2ISL A;  4BNB A;  3GAG A;  3X21 A;  2I7H A;  3EOF A;  3GR3 A;  3GB5 A;  1YWQ A;  2ISK A;  1YLU A;  4XOO A;  1F5V A;  5KO7 A;  3HJ9 A;  4EO3 A;  4URP A;  2YMV A;  3X22 A;  2WQF A;  3GE5 A;  1ICV A;  3G14 A;  3K6H A;  1ICR A;  3GBH A;  4TTC A;  2WZV A;  5KRD A;  3GE6 A;  1YKI A;  2ISJ A;  3EK3 A;  4TTB A;  1BKJ A;  1J6R A;  4DN2 A;  3E10 A;  3TNZ A;  1YLR A;  2H0U A;  1ICU A;  3KOQ A;  2IFA A;  4QLX A;  3QDL A;  1OOQ A;  5HDJ A;  3GFA A;  1VFR A;  1DS7 A;  1VKW A;  3BM2 A;  4BN7 A;  5KO8 A;  1OO5 A;  2BKJ A;  2WZW A;  2HAY A;  3PXV A;  3HOI A;  1OO6 A;  3EO7 A;  3GFD A;  1OON A;  4QLY A;  4G8S A;  5J6C A;  1NOX A;  3TO0 A;  2FRE A;  3GH8 A;  3N2S A;  3HZN A;  2R01 A;  1NEC A;  3KWK A;  1V5Y A;  3OF4 A;  4BN6 A;  3BM1 A;  5HEI A;  4BN8 A;  1V5Z A;  3E39 A;  1KQD A;  4BN9 A;  3M5K A;  4XOQ A;  2B67 A;  3BEM A;  1IDT A;  1ZCH A;  3H4O A;  1KQC A;  4XOM A;  1KQB A; 
#chains in the Genus database with same CATH homology
 3EO8 A;  2ISL A;  4BNB A;  3GAG A;  3X21 A;  2I7H A;  3EOF A;  3GR3 A;  3GB5 A;  1YWQ A;  2ISK A;  1YLU A;  4XOO A;  1F5V A;  5KO7 A;  3HJ9 A;  4EO3 A;  4URP A;  2YMV A;  3X22 A;  2WQF A;  3GE5 A;  1ICV A;  3G14 A;  3K6H A;  1ICR A;  3GBH A;  4TTC A;  2WZV A;  5KRD A;  3GE6 A;  1YKI A;  2ISJ A;  3EK3 A;  4TTB A;  1BKJ A;  1J6R A;  4DN2 A;  3E10 A;  3TNZ A;  1YLR A;  2H0U A;  1ICU A;  3KOQ A;  2IFA A;  4QLX A;  3QDL A;  1OOQ A;  5HDJ A;  3GFA A;  1VFR A;  1DS7 A;  1VKW A;  3BM2 A;  4BN7 A;  5KO8 A;  1OO5 A;  2BKJ A;  2WZW A;  2HAY A;  3PXV A;  3HOI A;  1OO6 A;  3EO7 A;  3GFD A;  1OON A;  4QLY A;  4G8S A;  5J6C A;  1NOX A;  3TO0 A;  2FRE A;  3GH8 A;  3N2S A;  3HZN A;  2R01 A;  1NEC A;  3KWK A;  1V5Y A;  3OF4 A;  4BN6 A;  3BM1 A;  5HEI A;  4BN8 A;  1V5Z A;  3E39 A;  1KQD A;  4BN9 A;  3M5K A;  4XOQ A;  2B67 A;  3BEM A;  1IDT A;  1ZCH A;  3H4O A;  1KQC A;  4XOM A;  1KQB A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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