3TOWA

Crystal structure of the mabp domain of mvb12b of human escrt-i complex
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
152
structure length
152
Chain Sequence
MDPITGVGVVASRNRAPTGYDVVAQTADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDIKDTLPVGFIPIQETVDTQEVAFRKKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIGELNSMGIWYRMGHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Protein transport
molecule keywords Multivesicular body subunit 12B
publication title Structural basis for membrane targeting by the MVB12-associated beta-prism domain of the human ESCRT-I MVB12 subunit.
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 152
sequence length 152
ec nomenclature
pdb deposition date 2011-09-06
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.100.10.50 Mainly Beta Aligned Prism Vitelline Membrane Outer Layer Protein I, subunit A Vitelline Membrane Outer Layer Protein I, subunit A 3towA00
3TOWA 2QP2A
chains in the Genus database with same CATH superfamily
1UGWA 1UGYA 4AKDA 5J51A 1VBOA 2NUOA 2BMZA 1W99A 1J4UA 4DDNA 2BN0A 1C3NA 1X1VA 3VZGA 4WOGA 4QX2A 3WOCA 3R50A 5EXGA 3EB7A 1I5PA 1UGWC 4PIUA 4R6RA 1VMOA 1XXRA 1XXQA 4QX1A 3LLZA 3LL0A 1JOTA 2BMYA 4R6OA 4AKBA 5JM1A 2JZ4A 1VBPA 1XEZA 3R51A 1JACA 4R6NA 4MOAA 1M26A 3AQGA 3LL1A 5J4XA 4R6QA 2HYQA 1WS4C 3VZEA 3LM1A 1UGYC 2C9KA 2GTYA 2GUDA 1JI6A 3MIVA 1J4SA 1C3MA 3LLYA 3LKYA 3VZFA 1C3KA 3VY7A 4PITA 1ZGSA 4ARXA 4D8MA 4QX3A 3MITA 2HYRA 3WOBA 4W8JA 1KUJA 3MIUA 3R52A 4AKCA 2GUXA 1UGXA 1DLCA 1WS5A 3APAA 1J4TA 5J50A 1ZGRA 3P8SA 2NU5A 4PIKA 1PXDA 2QP2A 1KU8A 1TP8A 1OUWA 2GUEA 5J4TA 3O44A 1UH1A 4R6PA 1WS5C 5AV7A 1CIYA 2GUCA 1UH0A 3LL2A 4PIFA 4AK4A 1TOQA 4MQ0A 5BN6E 4QX0A 4ARYA 3TOWA 4GX7A 3VY6A 1WS4A
chains in the Genus database with same CATH topology
4D8MA 3TOWA 2QP2A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TOW A;  2QP2 A; 
#chains in the Genus database with same CATH topology
 1UGW A;  1UGY A;  4AKD A;  5J51 A;  1VBO A;  2NUO A;  2BMZ A;  1W99 A;  1J4U A;  4DDN A;  2BN0 A;  1C3N A;  1X1V A;  3VZG A;  4WOG A;  4QX2 A;  3WOC A;  3R50 A;  5EXG A;  3EB7 A;  1I5P A;  1UGW C;  4PIU A;  4R6R A;  1VMO A;  1XXR A;  1XXQ A;  4QX1 A;  3LLZ A;  3LL0 A;  1JOT A;  2BMY A;  4R6O A;  4AKB A;  5JM1 A;  2JZ4 A;  1VBP A;  1XEZ A;  3R51 A;  1JAC A;  4R6N A;  4MOA A;  1M26 A;  3AQG A;  3LL1 A;  5J4X A;  4R6Q A;  2HYQ A;  1WS4 C;  3VZE A;  3LM1 A;  1UGY C;  2C9K A;  2GTY A;  2GUD A;  1JI6 A;  3MIV A;  1J4S A;  1C3M A;  3LLY A;  3LKY A;  3VZF A;  1C3K A;  3VY7 A;  4PIT A;  1ZGS A;  4ARX A;  4D8M A;  4QX3 A;  3MIT A;  2HYR A;  3WOB A;  4W8J A;  1KUJ A;  3MIU A;  3R52 A;  4AKC A;  2GUX A;  1UGX A;  1DLC A;  1WS5 A;  3APA A;  1J4T A;  5J50 A;  1ZGR A;  3P8S A;  2NU5 A;  4PIK A;  1PXD A;  2QP2 A;  1KU8 A;  1TP8 A;  1OUW A;  2GUE A;  5J4T A;  3O44 A;  1UH1 A;  4R6P A;  1WS5 C;  5AV7 A;  1CIY A;  2GUC A;  1UH0 A;  3LL2 A;  4PIF A;  4AK4 A;  1TOQ A;  4MQ0 A;  5BN6 E;  4QX0 A;  4ARY A;  3TOW A;  4GX7 A;  3VY6 A;  1WS4 A; 
#chains in the Genus database with same CATH homology
 4D8M A;  3TOW A;  2QP2 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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