3TSHA

Crystal structure of phl p 4, a grass pollen allergen with glucose dehydrogenase activity
Total Genus 172
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
172
sequence length
490
structure length
490
Chain Sequence
EDFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Allergen, oxidoreductase
molecule keywords Pollen allergen Phl p 4
publication title Crystal structure and immunologic characterization of the major grass pollen allergen Phl p 4.
pubmed doi rcsb
source organism Phleum pratense
total genus 172
structure length 490
sequence length 490
ec nomenclature
pdb deposition date 2011-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3tshA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3tshA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3tshA03
5AE1A 1MBTA 1WVEA 1N62C 2GQUA 1W1QA 1UXYA 1FFUC 1W1KA 3B9JB 2IPIA 2VFRA 3S1FA 2AXRA 3C0PA 3W8ZA 5FXPA 1E8FA 3JS8A 3ETRB 4JB1A 3HSUA 1FIQB 4PYTA 2EXRA 2GQTA 3NVZB 1V97A 4OALA 4UD8A 5FXEA 5HHZA 2W54A 3W8WA 1AHUA 1HSKA 2W3SA 1E0YA 3S1EA 1DIIA 5L6GA 1W1RA 1N5WC 1ZXIC 1N61C 1DIQA 5ADZA 4JAYA 4ZOHB 1E8HA 1QLUA 3W8XA 2I0KA 5I1WA 3GSYA 3NRZB 1W1OA 2QPMA 2BVFA 4DNSA 2Q85A 3VTEA 1WYGA 1FFVC 3BW7A 3FW8A 1DZNA 5D79A 3AN1A 5L6FA 3D2JA 1AHVA 3FW7A 4BCAA 3RJAA 4BC7A 2W3RA 4EC3A 4BC9A 2Y3SA 1N60C 2E3TA 4XLOA 3D2DA 1T3QC 5AWVA 1N5XA 4PWCA 3PQBA 3KJMA 4BBYA 3SR6B 1F0XA 3S1DA 1W1LA 5FXDA 3TX1A 3FW9A 1MBBA 2Q4WA 5HMRA 5AE3A 2QKNA 5FXFA 3POPA 4PZFA 2BVHA 1N63C 4MLAA 1VDVA 1FO4A 1QLTA 4O95A 3DQ0A 3I99A 2VFTA 1W1MA 3PM9A 5I1VA 3RJ8A 4PVHA 1E8GA 1W1JA 3EUB3 5HQXA 1WVFA 2VAOA 3AMZA 4ML8A 1JROA 2W55A 3S1CA 3NS1B 5K8EA 3TSHA 2Y3RA 2VFVA 2Y08A 1VAOA 3AM9A 2VFUA 4PVKA 4PWBA 1ZR6A 2BVGA 4PVEA 1AHZA 2Y4GA 2MBRA 1W1SA 2VFSA 3TSJA 1I19A 3FWAA 4PVJA 2WDWA 5AE2A 3D2HA
chains in the Genus database with same CATH superfamily
5AE1A 1MBTA 1WVEA 1N62C 2R8DA 2GQUA 1W1QA 1UXYA 3HRDC 1FFUC 1W1KA 3B9JB 2NQWA 2IPIA 2VFRA 2PLSA 3S1FA 2AXRA 3C0PA 3W8ZA 5FXPA 1E8FA 3JS8A 3ETRB 4JB1A 1SB3B 3HSUA 1FIQB 3LAEA 4PYTA 2EXRA 2P3HA 4HG0A 2GQTA 3NVZB 1V97A 4OALA 4UD8A 5FXEA 2RK5A 5HHZA 2W54A 3W8WA 1AHUA 1HSKA 2W3SA 1E0YA 3S1EA 1DIIA 2UUVA 2R2ZA 5L6GA 1W1RA 1N5WC 1ZXIC 3EJBB 1N61C 1DIQA 5ADZA 4JAYA 2P4PA 4ZOHB 1E8HA 1QLUA 3W8XA 1JRPA 2UUUA 2I0KA 5I1WA 3GSYA 3NRZB 1W1OA 1RM6B 2QPMA 2BVFA 4DNSA 2Q85A 3VTEA 1WYGA 1FFVC 3BW7A 3FW8A 1DZNA 5D79A 3AN1A 5L6FA 3D2JA 1AHVA 3FW7A 4BCAA 3NVWB 3NVYB 3RJAA 4BC7A 2W3RA 4EC3A 3EJDB 2PLIA 4BC9A 2Y3SA 1N60C 2E3TA 3EJEB 4XLOA 3D2DA 1T3QC 5AWVA 1N5XA 4PWCA 3PQBA 3KJMA 4BBYA 3SR6B 1F0XA 3S1DA 1W1LA 5FXDA 3TX1A 2O3GA 3FW9A 1MBBA 2Q4WA 5HMRA 5AE3A 2QKNA 5FXFA 3POPA 3NVVB 4PZFA 2BVHA 1N63C 4MLAA 1VDVA 1FO4A 1QLTA 4O95A 3DQ0A 3I99A 2VFTA 5G5HB 1W1MA 3PM9A 5I1VA 3DEDA 3RJ8A 4PVHA 2YVSA 1E8GA 1W1JA 3EUB3 2OAIA 5HQXA 1WVFA 2VAOA 3AMZA 4ML8A 1JROA 2W55A 3S1CA 3NS1B 3LLBA 5G5GB 5K8EA 3TSHA 2Y3RA 2VFVA 2P13A 2Y08A 1VAOA 3AM9A 2VFUA 4PVKA 4PWBA 1ZR6A 2BVGA 4PVEA 1AHZA 2Y4GA 2MBRA 1W1SA 2VFSA 3TSJA 1I19A 3FWAA 4PVJA 2WDWA 5AE2A 3D2HA
chains in the Genus database with same CATH topology
5AE1A 1MBTA 1WVEA 1N62C 2R8DA 2GQUA 1W1QA 1UXYA 3HRDC 1FFUC 1W1KA 3B9JB 2NQWA 2IPIA 2VFRA 2PLSA 3S1FA 2AXRA 3C0PA 3W8ZA 5FXPA 1E8FA 3JS8A 3ETRB 4JB1A 1SB3B 3HSUA 1FIQB 3LAEA 4PYTA 2EXRA 2P3HA 4HG0A 2GQTA 3NVZB 1V97A 4OALA 4UD8A 5FXEA 2RK5A 5HHZA 2W54A 3W8WA 1AHUA 1HSKA 2W3SA 1E0YA 3S1EA 1DIIA 2UUVA 2R2ZA 5L6GA 1W1RA 1N5WC 1ZXIC 1N61C 1DIQA 5ADZA 4JAYA 2P4PA 4ZOHB 1E8HA 1QLUA 3W8XA 1JRPA 2UUUA 2I0KA 5I1WA 3GSYA 3NRZB 1W1OA 1RM6B 2QPMA 2BVFA 4DNSA 2Q85A 3VTEA 1WYGA 1FFVC 3BW7A 3FW8A 1DZNA 5D79A 3AN1A 5L6FA 3D2JA 1AHVA 3FW7A 4BCAA 3NVWB 3NVYB 3RJAA 4BC7A 2W3RA 4EC3A 2PLIA 4BC9A 2Y3SA 1N60C 2E3TA 4XLOA 3D2DA 1T3QC 5AWVA 1N5XA 4PWCA 3PQBA 3KJMA 4BBYA 3SR6B 1F0XA 3S1DA 1W1LA 5FXDA 3TX1A 2O3GA 3FW9A 1MBBA 2Q4WA 5HMRA 5AE3A 2QKNA 5FXFA 3POPA 3NVVB 4PZFA 2BVHA 1N63C 4MLAA 1VDVA 1FO4A 1QLTA 4O95A 3DQ0A 3I99A 2VFTA 5G5HB 1W1MA 3PM9A 5I1VA 3DEDA 3RJ8A 4PVHA 2YVSA 1E8GA 1W1JA 3EUB3 2OAIA 5HQXA 1WVFA 2VAOA 3AMZA 4ML8A 1JROA 2W55A 3S1CA 3NS1B 3LLBA 5G5GB 5K8EA 3TSHA 2Y3RA 2VFVA 2P13A 2Y08A 1VAOA 3AM9A 2VFUA 4PVKA 4PWBA 1ZR6A 2BVGA 4PVEA 1AHZA 2Y4GA 2MBRA 1W1SA 2VFSA 3TSJA 1I19A 3FWAA 4PVJA 2WDWA 5AE2A 3D2HA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5AE1 A;  1MBT A;  1WVE A;  1N62 C;  2GQU A;  1W1Q A;  1UXY A;  1FFU C;  1W1K A;  3B9J B;  2IPI A;  2VFR A;  3S1F A;  2AXR A;  3C0P A;  3W8Z A;  5FXP A;  1E8F A;  3JS8 A;  3ETR B;  4JB1 A;  3HSU A;  1FIQ B;  4PYT A;  2EXR A;  2GQT A;  3NVZ B;  1V97 A;  4OAL A;  4UD8 A;  5FXE A;  5HHZ A;  2W54 A;  3W8W A;  1AHU A;  1HSK A;  2W3S A;  1E0Y A;  3S1E A;  1DII A;  5L6G A;  1W1R A;  1N5W C;  1ZXI C;  1N61 C;  1DIQ A;  5ADZ A;  4JAY A;  4ZOH B;  1E8H A;  1QLU A;  3W8X A;  2I0K A;  5I1W A;  3GSY A;  3NRZ B;  1W1O A;  2QPM A;  2BVF A;  4DNS A;  2Q85 A;  3VTE A;  1WYG A;  1FFV C;  3BW7 A;  3FW8 A;  1DZN A;  5D79 A;  3AN1 A;  5L6F A;  3D2J A;  1AHV A;  3FW7 A;  4BCA A;  3RJA A;  4BC7 A;  2W3R A;  4EC3 A;  4BC9 A;  2Y3S A;  1N60 C;  2E3T A;  4XLO A;  3D2D A;  1T3Q C;  5AWV A;  1N5X A;  4PWC A;  3PQB A;  3KJM A;  4BBY A;  3SR6 B;  1F0X A;  3S1D A;  1W1L A;  5FXD A;  3TX1 A;  3FW9 A;  1MBB A;  2Q4W A;  5HMR A;  5AE3 A;  2QKN A;  5FXF A;  3POP A;  4PZF A;  2BVH A;  1N63 C;  4MLA A;  1VDV A;  1FO4 A;  1QLT A;  4O95 A;  3DQ0 A;  3I99 A;  2VFT A;  1W1M A;  3PM9 A;  5I1V A;  3RJ8 A;  4PVH A;  1E8G A;  1W1J A;  3EUB 3;  5HQX A;  1WVF A;  2VAO A;  3AMZ A;  4ML8 A;  1JRO A;  2W55 A;  3S1C A;  3NS1 B;  5K8E A;  3TSH A;  2Y3R A;  2VFV A;  2Y08 A;  1VAO A;  3AM9 A;  2VFU A;  4PVK A;  4PWB A;  1ZR6 A;  2BVG A;  4PVE A;  1AHZ A;  2Y4G A;  2MBR A;  1W1S A;  2VFS A;  3TSJ A;  1I19 A;  3FWA A;  4PVJ A;  2WDW A;  5AE2 A;  3D2H A; 
#chains in the Genus database with same CATH topology
 5AE1 A;  1MBT A;  1WVE A;  1N62 C;  2R8D A;  2GQU A;  1W1Q A;  1UXY A;  3HRD C;  1FFU C;  1W1K A;  3B9J B;  2NQW A;  2IPI A;  2VFR A;  2PLS A;  3S1F A;  2AXR A;  3C0P A;  3W8Z A;  5FXP A;  1E8F A;  3JS8 A;  3ETR B;  4JB1 A;  1SB3 B;  3HSU A;  1FIQ B;  3LAE A;  4PYT A;  2EXR A;  2P3H A;  4HG0 A;  2GQT A;  3NVZ B;  1V97 A;  4OAL A;  4UD8 A;  5FXE A;  2RK5 A;  5HHZ A;  2W54 A;  3W8W A;  1AHU A;  1HSK A;  2W3S A;  1E0Y A;  3S1E A;  1DII A;  2UUV A;  2R2Z A;  5L6G A;  1W1R A;  1N5W C;  1ZXI C;  3EJB B;  1N61 C;  1DIQ A;  5ADZ A;  4JAY A;  2P4P A;  4ZOH B;  1E8H A;  1QLU A;  3W8X A;  1JRP A;  2UUU A;  2I0K A;  5I1W A;  3GSY A;  3NRZ B;  1W1O A;  1RM6 B;  2QPM A;  2BVF A;  4DNS A;  2Q85 A;  3VTE A;  1WYG A;  1FFV C;  3BW7 A;  3FW8 A;  1DZN A;  5D79 A;  3AN1 A;  5L6F A;  3D2J A;  1AHV A;  3FW7 A;  4BCA A;  3NVW B;  3NVY B;  3RJA A;  4BC7 A;  2W3R A;  4EC3 A;  3EJD B;  2PLI A;  4BC9 A;  2Y3S A;  1N60 C;  2E3T A;  3EJE B;  4XLO A;  3D2D A;  1T3Q C;  5AWV A;  1N5X A;  4PWC A;  3PQB A;  3KJM A;  4BBY A;  3SR6 B;  1F0X A;  3S1D A;  1W1L A;  5FXD A;  3TX1 A;  2O3G A;  3FW9 A;  1MBB A;  2Q4W A;  5HMR A;  5AE3 A;  2QKN A;  5FXF A;  3POP A;  3NVV B;  4PZF A;  2BVH A;  1N63 C;  4MLA A;  1VDV A;  1FO4 A;  1QLT A;  4O95 A;  3DQ0 A;  3I99 A;  2VFT A;  5G5H B;  1W1M A;  3PM9 A;  5I1V A;  3DED A;  3RJ8 A;  4PVH A;  2YVS A;  1E8G A;  1W1J A;  3EUB 3;  2OAI A;  5HQX A;  1WVF A;  2VAO A;  3AMZ A;  4ML8 A;  1JRO A;  2W55 A;  3S1C A;  3NS1 B;  3LLB A;  5G5G B;  5K8E A;  3TSH A;  2Y3R A;  2VFV A;  2P13 A;  2Y08 A;  1VAO A;  3AM9 A;  2VFU A;  4PVK A;  4PWB A;  1ZR6 A;  2BVG A;  4PVE A;  1AHZ A;  2Y4G A;  2MBR A;  1W1S A;  2VFS A;  3TSJ A;  1I19 A;  3FWA A;  4PVJ A;  2WDW A;  5AE2 A;  3D2H A; 
#chains in the Genus database with same CATH homology
 5AE1 A;  1MBT A;  1WVE A;  1N62 C;  2R8D A;  2GQU A;  1W1Q A;  1UXY A;  3HRD C;  1FFU C;  1W1K A;  3B9J B;  2NQW A;  2IPI A;  2VFR A;  2PLS A;  3S1F A;  2AXR A;  3C0P A;  3W8Z A;  5FXP A;  1E8F A;  3JS8 A;  3ETR B;  4JB1 A;  1SB3 B;  3HSU A;  1FIQ B;  3LAE A;  4PYT A;  2EXR A;  2P3H A;  4HG0 A;  2GQT A;  3NVZ B;  1V97 A;  4OAL A;  4UD8 A;  5FXE A;  2RK5 A;  5HHZ A;  2W54 A;  3W8W A;  1AHU A;  1HSK A;  2W3S A;  1E0Y A;  3S1E A;  1DII A;  2UUV A;  2R2Z A;  5L6G A;  1W1R A;  1N5W C;  1ZXI C;  1N61 C;  1DIQ A;  5ADZ A;  4JAY A;  2P4P A;  4ZOH B;  1E8H A;  1QLU A;  3W8X A;  1JRP A;  2UUU A;  2I0K A;  5I1W A;  3GSY A;  3NRZ B;  1W1O A;  1RM6 B;  2QPM A;  2BVF A;  4DNS A;  2Q85 A;  3VTE A;  1WYG A;  1FFV C;  3BW7 A;  3FW8 A;  1DZN A;  5D79 A;  3AN1 A;  5L6F A;  3D2J A;  1AHV A;  3FW7 A;  4BCA A;  3NVW B;  3NVY B;  3RJA A;  4BC7 A;  2W3R A;  4EC3 A;  2PLI A;  4BC9 A;  2Y3S A;  1N60 C;  2E3T A;  4XLO A;  3D2D A;  1T3Q C;  5AWV A;  1N5X A;  4PWC A;  3PQB A;  3KJM A;  4BBY A;  3SR6 B;  1F0X A;  3S1D A;  1W1L A;  5FXD A;  3TX1 A;  2O3G A;  3FW9 A;  1MBB A;  2Q4W A;  5HMR A;  5AE3 A;  2QKN A;  5FXF A;  3POP A;  3NVV B;  4PZF A;  2BVH A;  1N63 C;  4MLA A;  1VDV A;  1FO4 A;  1QLT A;  4O95 A;  3DQ0 A;  3I99 A;  2VFT A;  5G5H B;  1W1M A;  3PM9 A;  5I1V A;  3DED A;  3RJ8 A;  4PVH A;  2YVS A;  1E8G A;  1W1J A;  3EUB 3;  2OAI A;  5HQX A;  1WVF A;  2VAO A;  3AMZ A;  4ML8 A;  1JRO A;  2W55 A;  3S1C A;  3NS1 B;  3LLB A;  5G5G B;  5K8E A;  3TSH A;  2Y3R A;  2VFV A;  2P13 A;  2Y08 A;  1VAO A;  3AM9 A;  2VFU A;  4PVK A;  4PWB A;  1ZR6 A;  2BVG A;  4PVE A;  1AHZ A;  2Y4G A;  2MBR A;  1W1S A;  2VFS A;  3TSJ A;  1I19 A;  3FWA A;  4PVJ A;  2WDW A;  5AE2 A;  3D2H A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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