3TSJA

Crystal structure of phl p 4, a grass pollen allergen with glucose dehydrogenase activity
Total Genus 168
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
168
sequence length
489
structure length
489
Chain Sequence
DFLGCLVKEIPPRLLYAKSSPAYPSVLGQTIRNSRWSSPDNVKPLYIITPTQVSHIQSAVVCGRRHSVRIRVRSGGHDYEGLSYRSLQPETFAVVDLNKMRAVWVDGKARTAWVDSGAQLGELYYAIYKASPTLAFPAGVCPTIGVGGNFAGGGFGMLLRKYGIAAENVIDVKLVDANGKLHDKKSMGDDHFWAVRGGGGESFGIVVAWQVKLLPVPPTVTIFKISKTVSEGAVDIINKWQVVAPQLPADLMIRIIAQGPKATFEAMYLGTCKTLTPLMSSKFPELGMNPSHCNEMSWIQSIPFVHLGHRDALEDDLLNRQNSFKPFAEYKSDYVYQPFPKTVWEQILNTWLVKPGAGIMIFDPYGATISATPESATPFPHRKGVLFNIQYVNYWFAPGAAAAPLSWSKDIYNYMEPYVSKNPRQAYANYRDIDLGRNEVVNDVSTYASGKVWGQKYFKGNFERLAITKGKVDPTDYFRNEQSIPPLIK
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Allergen, oxidoreductase
source organism Phleum pratense
publication title Crystal structure and immunologic characterization of the major grass pollen allergen Phl p 4.
pubmed doi rcsb
molecule keywords Pollen allergen Phl p 4
total genus 168
structure length 489
sequence length 489
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-09-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01565 FAD_binding_4 FAD binding domain
A PF08031 BBE Berberine and berberine like
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.43.10 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 2 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase, domain 2 3tsjA01
3.30.465.50 Alpha Beta 2-Layer Sandwich Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 3tsjA02
3.40.462.20 Alpha Beta 3-Layer(aba) Sandwich Vanillyl-alcohol Oxidase; Chain A, domain 3 Vanillyl-alcohol Oxidase; Chain A, domain 3 3tsjA03
3I99A 3D2HA 3VTEA 2Q85A 2VFSA 1FFVC 1W1QA 3D2JA 3W8ZA 1N61C 4BCAA 2BVFA 1VDVA 4PVHA 4BBYA 4OALA 2Q4WA 2VFVA 4BC9A 1V97A 2W3SA 3B9JB 3PQBA 4PWCA 3S1EA 3EUB3 4PYTA 3JS8A 1WVEA 2VFTA 3W8WA 3D2DA 1UXYA 2W3RA 2E3TA 3NS1B 4ML8A 3HSUA 2WDWA 1MBBA 1MBTA 1N60C 1FIQB 1FFUC 1WVFA 3BW7A 4EC3A 3PM9A 3POPA 2Y3SA 1F0XA 3FWAA 1QLUA 5HQXA 3S1DA 2QKNA 2GQUA 4UD8A 4XLOA 3AMZA 3SR6B 4BC7A 4O95A 3TX1A 2Y4GA 4PVJA 2AXRA 1W1KA 1VAOA 2W54A 1W1LA 4PVEA 1T3QC 1E8GA 1N63C 1N62C 1I19A 5D79A 1JROA 5HMRA 1QLTA 2VFUA 4ZOHB 1E0YA 1ZR6A 3KJMA 5ADZA 1W1JA 4PVKA 5L6FA 3AM9A 3TSHA 5FXPA 5K8EA 1E8HA 5I1WA 3GSYA 3RJ8A 1W1MA 3S1CA 2QPMA 2EXRA 5L6GA 5AWVA 3ETRB 2BVGA 4MLAA 3W8XA 1WYGA 3FW7A 1AHVA 2W55A 3C0PA 3DQ0A 3S1FA 5AE2A 1DIIA 5FXFA 2Y08A 5AE3A 2VFRA 5I1VA 1DIQA 2IPIA 4DNSA 2Y3RA 5HHZA 1HSKA 5AE1A 2MBRA 5FXDA 1W1SA 3TSJA 3NVZB 3NRZB 4JAYA 1E8FA 1DZNA 1FO4A 1W1OA 4JB1A 2GQTA 5FXEA 1ZXIC 3FW8A 4PZFA 1W1RA 1N5WC 1AHUA 4PWBA 3AN1A 2VAOA 2BVHA 3RJAA 1N5XA 1AHZA 3FW9A 2I0KA
chains in the Genus database with same CATH superfamily
3I99A 3D2HA 3NVVB 3VTEA 2Q85A 4HG0A 2VFSA 1FFVC 1W1QA 3D2JA 2P13A 3W8ZA 1N61C 4BCAA 3EJEB 5G5HB 2BVFA 1VDVA 4PVHA 4BBYA 4OALA 3NVWB 2Q4WA 2VFVA 4BC9A 1V97A 2W3SA 3B9JB 3PQBA 3LLBA 4PWCA 3S1EA 3EUB3 4PYTA 2O3GA 3JS8A 1WVEA 2VFTA 3W8WA 3D2DA 1UXYA 2W3RA 2E3TA 3NS1B 4ML8A 2UUUA 3HSUA 2WDWA 1MBBA 1MBTA 1N60C 1FIQB 1FFUC 1WVFA 3BW7A 4EC3A 3PM9A 3POPA 3EJDB 2Y3SA 1F0XA 3FWAA 1QLUA 5HQXA 3S1DA 2QKNA 2P3HA 2GQUA 4UD8A 4XLOA 3AMZA 3SR6B 4BC7A 4O95A 3TX1A 2Y4GA 4PVJA 1RM6B 2YVSA 2AXRA 1W1KA 1VAOA 2W54A 1W1LA 4PVEA 3EJBB 1T3QC 1E8GA 1N63C 1N62C 1I19A 5D79A 1JROA 5HMRA 1QLTA 2VFUA 4ZOHB 1E0YA 3DEDA 1ZR6A 3KJMA 5ADZA 1W1JA 4PVKA 5L6FA 3AM9A 3TSHA 5FXPA 5K8EA 1SB3B 1E8HA 5I1WA 2R8DA 3GSYA 3RJ8A 1W1MA 3HRDC 3NVYB 3S1CA 2QPMA 2EXRA 5L6GA 5AWVA 3ETRB 2BVGA 4MLAA 3W8XA 1WYGA 2NQWA 3FW7A 1AHVA 2W55A 3C0PA 3DQ0A 3S1FA 5AE2A 1DIIA 5FXFA 2Y08A 5AE3A 2VFRA 2UUVA 5I1VA 1JRPA 1DIQA 2IPIA 4DNSA 2Y3RA 2OAIA 5G5GB 2PLSA 5HHZA 1HSKA 5AE1A 2P4PA 2R2ZA 2MBRA 2RK5A 5FXDA 1W1SA 3TSJA 3NVZB 3NRZB 4JAYA 1E8FA 1DZNA 1FO4A 1W1OA 4JB1A 2GQTA 5FXEA 1ZXIC 3FW8A 2PLIA 4PZFA 1W1RA 1N5WC 1AHUA 4PWBA 3AN1A 3LAEA 2VAOA 2BVHA 3RJAA 1N5XA 1AHZA 3FW9A 2I0KA
chains in the Genus database with same CATH topology
3I99A 3D2HA 3VTEA 3NVVB 2Q85A 4HG0A 2VFSA 1FFVC 1W1QA 3D2JA 2P13A 3W8ZA 1N61C 4BCAA 5G5HB 2BVFA 1VDVA 4PVHA 4BBYA 4OALA 3NVWB 2Q4WA 2VFVA 4BC9A 1V97A 2W3SA 3B9JB 3PQBA 3LLBA 4PWCA 3S1EA 3EUB3 4PYTA 2O3GA 3JS8A 1WVEA 2VFTA 3W8WA 3D2DA 1UXYA 2W3RA 2E3TA 3NS1B 4ML8A 2UUUA 3HSUA 2WDWA 1MBBA 1MBTA 1N60C 1FIQB 1FFUC 1WVFA 3BW7A 4EC3A 3PM9A 3POPA 2Y3SA 1F0XA 3FWAA 1QLUA 5HQXA 3S1DA 2QKNA 2P3HA 2GQUA 4UD8A 4XLOA 3AMZA 3SR6B 4BC7A 4O95A 3TX1A 2Y4GA 4PVJA 1RM6B 2YVSA 2AXRA 1W1KA 1VAOA 2W54A 1W1LA 4PVEA 1T3QC 1E8GA 1N63C 1N62C 1I19A 5D79A 1JROA 5HMRA 1QLTA 2VFUA 4ZOHB 1E0YA 3DEDA 1ZR6A 3KJMA 5ADZA 1W1JA 4PVKA 5L6FA 3AM9A 3TSHA 5FXPA 5K8EA 1SB3B 1E8HA 5I1WA 2R8DA 3GSYA 3RJ8A 1W1MA 3HRDC 3S1CA 3NVYB 2QPMA 2EXRA 5L6GA 5AWVA 3ETRB 2BVGA 4MLAA 3W8XA 1WYGA 2NQWA 3FW7A 1AHVA 2W55A 3C0PA 3DQ0A 3S1FA 5AE2A 1DIIA 5FXFA 2Y08A 5AE3A 2VFRA 2UUVA 5I1VA 1JRPA 1DIQA 2IPIA 4DNSA 2Y3RA 2OAIA 5G5GB 2PLSA 5HHZA 1HSKA 5AE1A 2P4PA 2R2ZA 2MBRA 2RK5A 5FXDA 1W1SA 3TSJA 3NVZB 3NRZB 4JAYA 1E8FA 1DZNA 1FO4A 1W1OA 4JB1A 2GQTA 5FXEA 1ZXIC 3FW8A 2PLIA 4PZFA 1W1RA 1N5WC 1AHUA 4PWBA 3AN1A 3LAEA 2VAOA 2BVHA 3RJAA 1N5XA 1AHZA 3FW9A 2I0KA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3I99 A;  3D2H A;  3VTE A;  2Q85 A;  2VFS A;  1FFV C;  1W1Q A;  3D2J A;  3W8Z A;  1N61 C;  4BCA A;  2BVF A;  1VDV A;  4PVH A;  4BBY A;  4OAL A;  2Q4W A;  2VFV A;  4BC9 A;  1V97 A;  2W3S A;  3B9J B;  3PQB A;  4PWC A;  3S1E A;  3EUB 3;  4PYT A;  3JS8 A;  1WVE A;  2VFT A;  3W8W A;  3D2D A;  1UXY A;  2W3R A;  2E3T A;  3NS1 B;  4ML8 A;  3HSU A;  2WDW A;  1MBB A;  1MBT A;  1N60 C;  1FIQ B;  1FFU C;  1WVF A;  3BW7 A;  4EC3 A;  3PM9 A;  3POP A;  2Y3S A;  1F0X A;  3FWA A;  1QLU A;  5HQX A;  3S1D A;  2QKN A;  2GQU A;  4UD8 A;  4XLO A;  3AMZ A;  3SR6 B;  4BC7 A;  4O95 A;  3TX1 A;  2Y4G A;  4PVJ A;  2AXR A;  1W1K A;  1VAO A;  2W54 A;  1W1L A;  4PVE A;  1T3Q C;  1E8G A;  1N63 C;  1N62 C;  1I19 A;  5D79 A;  1JRO A;  5HMR A;  1QLT A;  2VFU A;  4ZOH B;  1E0Y A;  1ZR6 A;  3KJM A;  5ADZ A;  1W1J A;  4PVK A;  5L6F A;  3AM9 A;  3TSH A;  5FXP A;  5K8E A;  1E8H A;  5I1W A;  3GSY A;  3RJ8 A;  1W1M A;  3S1C A;  2QPM A;  2EXR A;  5L6G A;  5AWV A;  3ETR B;  2BVG A;  4MLA A;  3W8X A;  1WYG A;  3FW7 A;  1AHV A;  2W55 A;  3C0P A;  3DQ0 A;  3S1F A;  5AE2 A;  1DII A;  5FXF A;  2Y08 A;  5AE3 A;  2VFR A;  5I1V A;  1DIQ A;  2IPI A;  4DNS A;  2Y3R A;  5HHZ A;  1HSK A;  5AE1 A;  2MBR A;  5FXD A;  1W1S A;  3TSJ A;  3NVZ B;  3NRZ B;  4JAY A;  1E8F A;  1DZN A;  1FO4 A;  1W1O A;  4JB1 A;  2GQT A;  5FXE A;  1ZXI C;  3FW8 A;  4PZF A;  1W1R A;  1N5W C;  1AHU A;  4PWB A;  3AN1 A;  2VAO A;  2BVH A;  3RJA A;  1N5X A;  1AHZ A;  3FW9 A;  2I0K A; 
#chains in the Genus database with same CATH topology
 3I99 A;  3D2H A;  3NVV B;  3VTE A;  2Q85 A;  4HG0 A;  2VFS A;  1FFV C;  1W1Q A;  3D2J A;  2P13 A;  3W8Z A;  1N61 C;  4BCA A;  3EJE B;  5G5H B;  2BVF A;  1VDV A;  4PVH A;  4BBY A;  4OAL A;  3NVW B;  2Q4W A;  2VFV A;  4BC9 A;  1V97 A;  2W3S A;  3B9J B;  3PQB A;  3LLB A;  4PWC A;  3S1E A;  3EUB 3;  4PYT A;  2O3G A;  3JS8 A;  1WVE A;  2VFT A;  3W8W A;  3D2D A;  1UXY A;  2W3R A;  2E3T A;  3NS1 B;  4ML8 A;  2UUU A;  3HSU A;  2WDW A;  1MBB A;  1MBT A;  1N60 C;  1FIQ B;  1FFU C;  1WVF A;  3BW7 A;  4EC3 A;  3PM9 A;  3POP A;  3EJD B;  2Y3S A;  1F0X A;  3FWA A;  1QLU A;  5HQX A;  3S1D A;  2QKN A;  2P3H A;  2GQU A;  4UD8 A;  4XLO A;  3AMZ A;  3SR6 B;  4BC7 A;  4O95 A;  3TX1 A;  2Y4G A;  4PVJ A;  1RM6 B;  2YVS A;  2AXR A;  1W1K A;  1VAO A;  2W54 A;  1W1L A;  4PVE A;  3EJB B;  1T3Q C;  1E8G A;  1N63 C;  1N62 C;  1I19 A;  5D79 A;  1JRO A;  5HMR A;  1QLT A;  2VFU A;  4ZOH B;  1E0Y A;  3DED A;  1ZR6 A;  3KJM A;  5ADZ A;  1W1J A;  4PVK A;  5L6F A;  3AM9 A;  3TSH A;  5FXP A;  5K8E A;  1SB3 B;  1E8H A;  5I1W A;  2R8D A;  3GSY A;  3RJ8 A;  1W1M A;  3HRD C;  3NVY B;  3S1C A;  2QPM A;  2EXR A;  5L6G A;  5AWV A;  3ETR B;  2BVG A;  4MLA A;  3W8X A;  1WYG A;  2NQW A;  3FW7 A;  1AHV A;  2W55 A;  3C0P A;  3DQ0 A;  3S1F A;  5AE2 A;  1DII A;  5FXF A;  2Y08 A;  5AE3 A;  2VFR A;  2UUV A;  5I1V A;  1JRP A;  1DIQ A;  2IPI A;  4DNS A;  2Y3R A;  2OAI A;  5G5G B;  2PLS A;  5HHZ A;  1HSK A;  5AE1 A;  2P4P A;  2R2Z A;  2MBR A;  2RK5 A;  5FXD A;  1W1S A;  3TSJ A;  3NVZ B;  3NRZ B;  4JAY A;  1E8F A;  1DZN A;  1FO4 A;  1W1O A;  4JB1 A;  2GQT A;  5FXE A;  1ZXI C;  3FW8 A;  2PLI A;  4PZF A;  1W1R A;  1N5W C;  1AHU A;  4PWB A;  3AN1 A;  3LAE A;  2VAO A;  2BVH A;  3RJA A;  1N5X A;  1AHZ A;  3FW9 A;  2I0K A; 
#chains in the Genus database with same CATH homology
 3I99 A;  3D2H A;  3VTE A;  3NVV B;  2Q85 A;  4HG0 A;  2VFS A;  1FFV C;  1W1Q A;  3D2J A;  2P13 A;  3W8Z A;  1N61 C;  4BCA A;  5G5H B;  2BVF A;  1VDV A;  4PVH A;  4BBY A;  4OAL A;  3NVW B;  2Q4W A;  2VFV A;  4BC9 A;  1V97 A;  2W3S A;  3B9J B;  3PQB A;  3LLB A;  4PWC A;  3S1E A;  3EUB 3;  4PYT A;  2O3G A;  3JS8 A;  1WVE A;  2VFT A;  3W8W A;  3D2D A;  1UXY A;  2W3R A;  2E3T A;  3NS1 B;  4ML8 A;  2UUU A;  3HSU A;  2WDW A;  1MBB A;  1MBT A;  1N60 C;  1FIQ B;  1FFU C;  1WVF A;  3BW7 A;  4EC3 A;  3PM9 A;  3POP A;  2Y3S A;  1F0X A;  3FWA A;  1QLU A;  5HQX A;  3S1D A;  2QKN A;  2P3H A;  2GQU A;  4UD8 A;  4XLO A;  3AMZ A;  3SR6 B;  4BC7 A;  4O95 A;  3TX1 A;  2Y4G A;  4PVJ A;  1RM6 B;  2YVS A;  2AXR A;  1W1K A;  1VAO A;  2W54 A;  1W1L A;  4PVE A;  1T3Q C;  1E8G A;  1N63 C;  1N62 C;  1I19 A;  5D79 A;  1JRO A;  5HMR A;  1QLT A;  2VFU A;  4ZOH B;  1E0Y A;  3DED A;  1ZR6 A;  3KJM A;  5ADZ A;  1W1J A;  4PVK A;  5L6F A;  3AM9 A;  3TSH A;  5FXP A;  5K8E A;  1SB3 B;  1E8H A;  5I1W A;  2R8D A;  3GSY A;  3RJ8 A;  1W1M A;  3HRD C;  3S1C A;  3NVY B;  2QPM A;  2EXR A;  5L6G A;  5AWV A;  3ETR B;  2BVG A;  4MLA A;  3W8X A;  1WYG A;  2NQW A;  3FW7 A;  1AHV A;  2W55 A;  3C0P A;  3DQ0 A;  3S1F A;  5AE2 A;  1DII A;  5FXF A;  2Y08 A;  5AE3 A;  2VFR A;  2UUV A;  5I1V A;  1JRP A;  1DIQ A;  2IPI A;  4DNS A;  2Y3R A;  2OAI A;  5G5G B;  2PLS A;  5HHZ A;  1HSK A;  5AE1 A;  2P4P A;  2R2Z A;  2MBR A;  2RK5 A;  5FXD A;  1W1S A;  3TSJ A;  3NVZ B;  3NRZ B;  4JAY A;  1E8F A;  1DZN A;  1FO4 A;  1W1O A;  4JB1 A;  2GQT A;  5FXE A;  1ZXI C;  3FW8 A;  2PLI A;  4PZF A;  1W1R A;  1N5W C;  1AHU A;  4PWB A;  3AN1 A;  3LAE A;  2VAO A;  2BVH A;  3RJA A;  1N5X A;  1AHZ A;  3FW9 A;  2I0K A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...