3TZGA

Crystal structure of a porin-like protein (bvu_2266) from bacteroides vulgatus atcc 8482 at 2.80 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
245
structure length
239
Chain Sequence
DTYVTKVTDLTGEEEQVLKLEYDRDGKIIKYGDTPVRYEGDQITIGQMNKLCNVTFQIGKGKARESRARCMLKVGEEVYEADKQTVYDYKGDTIFINSDYRATSDYRFLKKVQGKYVFDQLGRLKEVMTVFTEANDSVSSCHTYYNYDNNINYQANLNLQAYVIDYDGVDSFFYFLLNLGQLRNRTALPNDIGYCMNHGLSTYNVHANYRLDDENPVRIEVLYNYTKLLSRIDLSYNPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hypothetical protein BVU_2266 (BVU_2266) from Bacteroides vulgatus ATCC 8482 at 2.80 A resolution
rcsb
source organism Bacteroides vulgatus
molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein BVU_2266
total genus 54
structure length 239
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-09-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.150 Mainly Beta Beta Barrel Porin Porin 3tzgA00
3TZGA
chains in the Genus database with same CATH superfamily
2Y0HA 4FRTA 1BXWA 1MM5A 1GFOA 2W80C 4O3WA 4RLBA 4AYEC 4D65A 3HOEA 2JQYA 8PRNA 3AAEA 2F1TA 3LK42 5G38A 5G26A 4IL6O 2OMFA 3HOLA 2Y0LA 3WU2O 2LFUA 3BS0A 4CTDA 2JMMA 3HWBA 3SZVA 4AKRA 1T16A 1ZHWA 4D5UA 2LHFA 3NJTA 3FYXA 5PRNA 1MM4A 5G3AA 3NSGA 4AZLA 4GF4A 5AFUL 4FUVA 4AFKA 3PQUA 4KR8A 4UB6O 2XTRA 4RLCA 4K3CA 3VZUX 4AKMA 5B66O 1H6S1 4FSOA 1G90A 3HW9A 3LK2A 5T5FA 2MHLA 1PRNA 4FOZA 4XNKA 4FRXA 3K19A 1ZHTA 4XNLA 3WI4A 2R89A 4AYNA 3AA7B 2AXTO 3EMNX 3DZMA 1THQA 3RBHA 1BT9A 1E54A 4C4VA 2ZFGA 4BUMX 3JCUO 5ADXL 4GCQA 5GV0A 5JDPA 2MNHA 3A0HO 2KZ7B 4O4XA 5GTHO 4JFBA 2J4UP 5G39A 2GE4A 1GFPA 2R88A 4PUXA 1GFMA 5DL7A 3A0BO 4AYDC 5AFUK 2R4NA 5DL6A 1HXXA 2XG6A 5D5DA 1ZHZA 3QRCA 3DWOX 1YS5A 6PRNA 3UU2A 2R4PA 1HXUA 1QJPA 2QTKA 3SYSA 3PGUA 2XTQA 1OSMA 4N59A 4N74A 4C69X 2KXPA 3KZIO 3T0SA 2XE3A 3AAAB 3AA6B 2W81C 3LK2B 4U9CA 3VZTX 2KDYA 3LK3B 4D64A 2WJRA 5KAFO 4UB8O 3UAQA 4GCSA 5GTIO 4QQ1A 1Q9GA 1T1LA 2IWVA 3TZGA 2ODJA 3AAEB 1ZHXA 3VY8X 1ORMA 4G75A 2YPVA 3POUA 4O3YA 4FSPA 2M07A 4RJWA 2N2LA 3LK41 1P4TA 2N2MA 2WVPA 2FGQX 2PRNA 2WJQA 2O4VA 4LSIA 3C5OA 4C00A 4E1SA 5ADXK 4O3ZA 1MPFA 3AA6A 2ERVA 3DA3A 3AA0B 3JTYA 4FESA 4N75A 4GHBA 2Y2XA 4FMSA 4AYMC 3QRAA 3BRZA 4G76A 2YNKA 4RJXA 4E1TA 5H2FO 3T20A 4O3XB 4O49A 5B5EO 5KAIO 2XE1A 3PGSA 1ZHYA 4LSFA 2X27X 3VY9X 3UPGA 5TISO 1Q9FA 2KXPB 4K3BA 4PR7A 4Z3TA 2M06A 2R8AA 3PORA 4JCHA 5EE2A 3WI5A 3PQSA 2ZLDA 4LSEA 4O4UA 1QJ8A 4FZMA 2XE5A 4FQEA 4PJ0O 1IZNA 3AA1A 3VE2A 5DL5A 5DL8A 3GP6A 3POQA 2KC0A 3PGRA 3T24A 4AUIA 4RL9A 2FGRA 3AA7A 2R4OA 2XMXA 2KZ7A 3DA4A 4FZNA 4KRAA 3KVDD 4AYID 3DWNA 4C4VB 5IYUA 1GFNA 2R4LA 1OPFA 2Y7SA 3PRNA 3SY7A 4KR4A 2Y0KA 3V8UA 3SZDA 3O0EA 3AA0A 1PHOA 2J1NA 3VE1A 3G7GA 4N58A 3VZWX 2XE2A 1GFQA 1IZNB 1S5LO 4LSHA 1QJ9A 4F4BA 1BH3A 3AAAA 4GCPA 3SYBA 2X9KA 3SY9A 4B61A 7PRNA 2IWWA 4FT6A 3LK3A 5E79O 4AKRB 3A2SX 4FZLA 2F1VA 2F1CX 1HXTA 3PF1A 2K0LA 3POXA 3BRYA 5FVNA 3AA1B 2K4TA 2PORA
chains in the Genus database with same CATH topology
2Y0HA 4FRTA 1BXWA 1MM5A 1GFOA 2W80C 4O3WA 4RLBA 4AYEC 4D65A 3HOEA 8PRNA 3AAEA 2F1TA 3LK42 5G26A 2OMFA 3HOLA 2Y0LA 2LFUA 2JMMA 3HWBA 3SZVA 4AKRA 4D5UA 1ZHWA 2LHFA 3FYXA 2K4TA 5PRNA 1MM4A 3NSGA 4AZLA 4GF4A 5AFUL 4FUVA 4AFKA 3PQUA 4KR8A 2XTRA 4RLCA 3VZUX 4AKMA 1H6S1 4FSOA 1G90A 3HW9A 3LK2A 5T5FA 2MHLA 1PRNA 4FOZA 4XNKA 4FRXA 3K19A 1ZHTA 4XNLA 3WI4A 4AYNA 3AA7B 3EMNX 1THQA 3RBHA 1BT9A 1E54A 2ZFGA 4BUMX 5ADXL 4GCQA 5GV0A 5JDPA 2MNHA 4O4XA 2KZ7B 2J4UP 4JFBA 2GE4A 1GFPA 4PUXA 5AFUK 1GFMA 5DL7A 4AYDC 5DL6A 1HXXA 2XG6A 5D5DA 1ZHZA 3QRCA 1YS5A 6PRNA 3UU2A 3SYSA 1HXUA 1QJPA 2XTQA 1OSMA 4N59A 4C69X 2KXPA 3T0SA 2XE3A 3AAAB 3AA6B 2W81C 3LK2B 4U9CA 3VZTX 2KDYA 3LK3B 4D64A 3UAQA 4GCSA 4QQ1A 1Q9GA 3TZGA 2ODJA 3AAEB 1ZHXA 3VY8X 1ORMA 4G75A 2YPVA 3POUA 4O3YA 4FSPA 2M07A 4RJWA 2N2LA 3LK41 1P4TA 2N2MA 2FGQX 2PRNA 4LSIA 2O4VA 3C5OA 4E1SA 5ADXK 4O3ZA 1MPFA 3AA6A 2ERVA 3DA3A 3AA0B 3JTYA 4FESA 4AYMC 4GHBA 2Y2XA 4FMSA 4E1TA 3QRAA 3T20A 4G76A 2YNKA 4RJXA 4O3XB 4O49A 2XE1A 3VY9X 1ZHYA 4LSFA 2X27X 3UPGA 1Q9FA 2KXPB 4Z3TA 2M06A 4JCHA 3PORA 5EE2A 3WI5A 3PQSA 2ZLDA 4LSEA 4O4UA 1QJ8A 4FZMA 2XE5A 1IZNA 3AA1A 3VE2A 5DL5A 5DL8A 3GP6A 3POQA 2KC0A 3T24A 4AUIA 4RL9A 2FGRA 3AA7A 2XMXA 2KZ7A 3DA4A 4FZNA 4KRAA 3KVDD 4AYID 5IYUA 1GFNA 1OPFA 2Y7SA 3PRNA 3SY7A 4KR4A 2Y0KA 3V8UA 3SZDA 3O0EA 3AA0A 1PHOA 2J1NA 3VE1A 3G7GA 4N58A 3VZWX 2XE2A 1GFQA 1IZNB 4LSHA 1QJ9A 4F4BA 1BH3A 3AAAA 4GCPA 3SYBA 3SY9A 4B61A 7PRNA 4FT6A 3LK3A 4AKRB 3A2SX 4FZLA 2F1VA 3POXA 1HXTA 2K0LA 5FVNA 3AA1B 2QTKA 2PORA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TZG A; 
#chains in the Genus database with same CATH topology
 2Y0H A;  4FRT A;  1BXW A;  1MM5 A;  1GFO A;  2W80 C;  4O3W A;  4RLB A;  4AYE C;  4D65 A;  3HOE A;  2JQY A;  8PRN A;  3AAE A;  2F1T A;  3LK4 2;  5G38 A;  5G26 A;  4IL6 O;  2OMF A;  3HOL A;  2Y0L A;  3WU2 O;  2LFU A;  3BS0 A;  4CTD A;  2JMM A;  3HWB A;  3SZV A;  4AKR A;  1T16 A;  1ZHW A;  4D5U A;  2LHF A;  3NJT A;  3FYX A;  5PRN A;  1MM4 A;  5G3A A;  3NSG A;  4AZL A;  4GF4 A;  5AFU L;  4FUV A;  4AFK A;  3PQU A;  4KR8 A;  4UB6 O;  2XTR A;  4RLC A;  4K3C A;  3VZU X;  4AKM A;  5B66 O;  1H6S 1;  4FSO A;  1G90 A;  3HW9 A;  3LK2 A;  5T5F A;  2MHL A;  1PRN A;  4FOZ A;  4XNK A;  4FRX A;  3K19 A;  1ZHT A;  4XNL A;  3WI4 A;  2R89 A;  4AYN A;  3AA7 B;  2AXT O;  3EMN X;  3DZM A;  1THQ A;  3RBH A;  1BT9 A;  1E54 A;  4C4V A;  2ZFG A;  4BUM X;  3JCU O;  5ADX L;  4GCQ A;  5GV0 A;  5JDP A;  2MNH A;  3A0H O;  2KZ7 B;  4O4X A;  5GTH O;  4JFB A;  2J4U P;  5G39 A;  2GE4 A;  1GFP A;  2R88 A;  4PUX A;  1GFM A;  5DL7 A;  3A0B O;  4AYD C;  5AFU K;  2R4N A;  5DL6 A;  1HXX A;  2XG6 A;  5D5D A;  1ZHZ A;  3QRC A;  3DWO X;  1YS5 A;  6PRN A;  3UU2 A;  2R4P A;  1HXU A;  1QJP A;  2QTK A;  3SYS A;  3PGU A;  2XTQ A;  1OSM A;  4N59 A;  4N74 A;  4C69 X;  2KXP A;  3KZI O;  3T0S A;  2XE3 A;  3AAA B;  3AA6 B;  2W81 C;  3LK2 B;  4U9C A;  3VZT X;  2KDY A;  3LK3 B;  4D64 A;  2WJR A;  5KAF O;  4UB8 O;  3UAQ A;  4GCS A;  5GTI O;  4QQ1 A;  1Q9G A;  1T1L A;  2IWV A;  3TZG A;  2ODJ A;  3AAE B;  1ZHX A;  3VY8 X;  1ORM A;  4G75 A;  2YPV A;  3POU A;  4O3Y A;  4FSP A;  2M07 A;  4RJW A;  2N2L A;  3LK4 1;  1P4T A;  2N2M A;  2WVP A;  2FGQ X;  2PRN A;  2WJQ A;  2O4V A;  4LSI A;  3C5O A;  4C00 A;  4E1S A;  5ADX K;  4O3Z A;  1MPF A;  3AA6 A;  2ERV A;  3DA3 A;  3AA0 B;  3JTY A;  4FES A;  4N75 A;  4GHB A;  2Y2X A;  4FMS A;  4AYM C;  3QRA A;  3BRZ A;  4G76 A;  2YNK A;  4RJX A;  4E1T A;  5H2F O;  3T20 A;  4O3X B;  4O49 A;  5B5E O;  5KAI O;  2XE1 A;  3PGS A;  1ZHY A;  4LSF A;  2X27 X;  3VY9 X;  3UPG A;  5TIS O;  1Q9F A;  2KXP B;  4K3B A;  4PR7 A;  4Z3T A;  2M06 A;  2R8A A;  3POR A;  4JCH A;  5EE2 A;  3WI5 A;  3PQS A;  2ZLD A;  4LSE A;  4O4U A;  1QJ8 A;  4FZM A;  2XE5 A;  4FQE A;  4PJ0 O;  1IZN A;  3AA1 A;  3VE2 A;  5DL5 A;  5DL8 A;  3GP6 A;  3POQ A;  2KC0 A;  3PGR A;  3T24 A;  4AUI A;  4RL9 A;  2FGR A;  3AA7 A;  2R4O A;  2XMX A;  2KZ7 A;  3DA4 A;  4FZN A;  4KRA A;  3KVD D;  4AYI D;  3DWN A;  4C4V B;  5IYU A;  1GFN A;  2R4L A;  1OPF A;  2Y7S A;  3PRN A;  3SY7 A;  4KR4 A;  2Y0K A;  3V8U A;  3SZD A;  3O0E A;  3AA0 A;  1PHO A;  2J1N A;  3VE1 A;  3G7G A;  4N58 A;  3VZW X;  2XE2 A;  1GFQ A;  1IZN B;  1S5L O;  4LSH A;  1QJ9 A;  4F4B A;  1BH3 A;  3AAA A;  4GCP A;  3SYB A;  2X9K A;  3SY9 A;  4B61 A;  7PRN A;  2IWW A;  4FT6 A;  3LK3 A;  5E79 O;  4AKR B;  3A2S X;  4FZL A;  2F1V A;  2F1C X;  1HXT A;  3PF1 A;  2K0L A;  3POX A;  3BRY A;  5FVN A;  3AA1 B;  2K4T A;  2POR A; 
#chains in the Genus database with same CATH homology
 2Y0H A;  4FRT A;  1BXW A;  1MM5 A;  1GFO A;  2W80 C;  4O3W A;  4RLB A;  4AYE C;  4D65 A;  3HOE A;  8PRN A;  3AAE A;  2F1T A;  3LK4 2;  5G26 A;  2OMF A;  3HOL A;  2Y0L A;  2LFU A;  2JMM A;  3HWB A;  3SZV A;  4AKR A;  4D5U A;  1ZHW A;  2LHF A;  3FYX A;  2K4T A;  5PRN A;  1MM4 A;  3NSG A;  4AZL A;  4GF4 A;  5AFU L;  4FUV A;  4AFK A;  3PQU A;  4KR8 A;  2XTR A;  4RLC A;  3VZU X;  4AKM A;  1H6S 1;  4FSO A;  1G90 A;  3HW9 A;  3LK2 A;  5T5F A;  2MHL A;  1PRN A;  4FOZ A;  4XNK A;  4FRX A;  3K19 A;  1ZHT A;  4XNL A;  3WI4 A;  4AYN A;  3AA7 B;  3EMN X;  1THQ A;  3RBH A;  1BT9 A;  1E54 A;  2ZFG A;  4BUM X;  5ADX L;  4GCQ A;  5GV0 A;  5JDP A;  2MNH A;  4O4X A;  2KZ7 B;  2J4U P;  4JFB A;  2GE4 A;  1GFP A;  4PUX A;  5AFU K;  1GFM A;  5DL7 A;  4AYD C;  5DL6 A;  1HXX A;  2XG6 A;  5D5D A;  1ZHZ A;  3QRC A;  1YS5 A;  6PRN A;  3UU2 A;  3SYS A;  1HXU A;  1QJP A;  2XTQ A;  1OSM A;  4N59 A;  4C69 X;  2KXP A;  3T0S A;  2XE3 A;  3AAA B;  3AA6 B;  2W81 C;  3LK2 B;  4U9C A;  3VZT X;  2KDY A;  3LK3 B;  4D64 A;  3UAQ A;  4GCS A;  4QQ1 A;  1Q9G A;  3TZG A;  2ODJ A;  3AAE B;  1ZHX A;  3VY8 X;  1ORM A;  4G75 A;  2YPV A;  3POU A;  4O3Y A;  4FSP A;  2M07 A;  4RJW A;  2N2L A;  3LK4 1;  1P4T A;  2N2M A;  2FGQ X;  2PRN A;  4LSI A;  2O4V A;  3C5O A;  4E1S A;  5ADX K;  4O3Z A;  1MPF A;  3AA6 A;  2ERV A;  3DA3 A;  3AA0 B;  3JTY A;  4FES A;  4AYM C;  4GHB A;  2Y2X A;  4FMS A;  4E1T A;  3QRA A;  3T20 A;  4G76 A;  2YNK A;  4RJX A;  4O3X B;  4O49 A;  2XE1 A;  3VY9 X;  1ZHY A;  4LSF A;  2X27 X;  3UPG A;  1Q9F A;  2KXP B;  4Z3T A;  2M06 A;  4JCH A;  3POR A;  5EE2 A;  3WI5 A;  3PQS A;  2ZLD A;  4LSE A;  4O4U A;  1QJ8 A;  4FZM A;  2XE5 A;  1IZN A;  3AA1 A;  3VE2 A;  5DL5 A;  5DL8 A;  3GP6 A;  3POQ A;  2KC0 A;  3T24 A;  4AUI A;  4RL9 A;  2FGR A;  3AA7 A;  2XMX A;  2KZ7 A;  3DA4 A;  4FZN A;  4KRA A;  3KVD D;  4AYI D;  5IYU A;  1GFN A;  1OPF A;  2Y7S A;  3PRN A;  3SY7 A;  4KR4 A;  2Y0K A;  3V8U A;  3SZD A;  3O0E A;  3AA0 A;  1PHO A;  2J1N A;  3VE1 A;  3G7G A;  4N58 A;  3VZW X;  2XE2 A;  1GFQ A;  1IZN B;  4LSH A;  1QJ9 A;  4F4B A;  1BH3 A;  3AAA A;  4GCP A;  3SYB A;  3SY9 A;  4B61 A;  7PRN A;  4FT6 A;  3LK3 A;  4AKR B;  3A2S X;  4FZL A;  2F1V A;  3POX A;  1HXT A;  2K0L A;  5FVN A;  3AA1 B;  2QTK A;  2POR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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