3TZGA

Crystal structure of a porin-like protein (bvu_2266) from bacteroides vulgatus atcc 8482 at 2.80 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
245
structure length
239
Chain Sequence
b'DTYVTKVTDLTGEEEQVLKLEYDRDGKIIKYGDTPVRYEGDQITIGQMNKLCNVTFQIGKGKARESRARCMLKVGEEVYEADKQTVYDYKGDTIFINSDYRATSDYRFLKKVQGKYVFDQLGRLKEVMTVFTEANDSVSSCHTYYNYDNNINYQANLNLQAYVIDYDGVDSFFYFLLNLGQLRNRTALPNDIGYCMNHGLSTYNVHANYRLDDENPVRIEVLYNYTKLLSRIDLSYNPL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein BVU_2266
publication title Crystal structure of a hypothetical protein BVU_2266 (BVU_2266) from Bacteroides vulgatus ATCC 8482 at 2.80 A resolution
rcsb
source organism Bacteroides vulgatus
molecule tags Structural genomics, unknown function
total genus 54
structure length 239
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-09-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.150 Mainly Beta Beta Barrel Porin Porin 3tzgA00
3TZGA
chains in the Genus database with same CATH superfamily
4FQEA 5G38A 3POQA 2R4NA 3QRCA 1MM4A 3QRAA 3HW9A 2IWWA 2YNKA 3BRYA 1HXXA 2O4VA 4AYEC 2KXPA 5ADXL 3PORA 2W81C 3T0SA 4FZLA 3PGUA 4GF4A 4FZNA 5G3AA 4AUIA 3BRZA 3AA7B 2N2MA 1GFOA 2KDYA 4GHBA 3G7GA 4JCHA 3VE2A 4O3XB 5B5EO 4AYNA 5DL8A 2XE1A 5GTHO 4G75A 4RLBA 2Y0LA 4LSIA 4PJ0O 3TZGA 5GV0A 2WJQA 3LK3B 3WI4A 4RJXA 2AXTO 1GFPA 3T20A 2MHLA 3LK2B 1IZNB 2YPVA 1IZNA 2M06A 2X27X 2KZ7B 3LK2A 2KZ7A 4IL6O 4UB6O 4XNKA 3WU2O 5ADXK 3BS0A 4O3ZA 1H6S1 2XG6A 3LK41 2XMXA 5TISO 4FESA 1GFMA 1PRNA 2OMFA 4KR4A 3SY9A 2J1NA 2ZFGA 3SYBA 4CTDA 1BXWA 5B66O 2LHFA 4FOZA 1MM5A 5G39A 1P4TA 5G26A 2R8AA 4C4VA 3PGSA 2K4TA 1HXUA 2KXPB 1T16A 5KAIO 1Q9FA 1ZHTA 3HWBA 3SZVA 3VE1A 4O3YA 5DL5A 3C5OA 5FVNA 3GP6A 4PR7A 2W80C 2Y2XA 3PRNA 3HOEA 8PRNA 2PORA 3KVDD 2Y7SA 3FYXA 3EMNX 3SZDA 5DL6A 6PRNA 5H2FO 3AAEB 4FT6A 3AAEA 4JFBA 1BH3A 5PRNA 3AA1B 3AA1A 4QQ1A 4K3CA 5E79O 1GFNA 4O4XA 4RL9A 5T5FA 3LK42 3SYSA 3UAQA 2WJRA 4GCPA 5JDPA 2GE4A 3A0BO 4O4UA 4GCQA 4O49A 4E1TA 4G76A 3A0HO 3DZMA 2Y0HA 3SY7A 1QJ8A 5KAFO 2QTKA 4D5UA 3PF1A 4UB8O 3AAAB 5EE2A 3AAAA 2LFUA 4C4VB 3DWOX 3V8UA 4N59A 1ZHZA 3VY9X 3VZWX 2PRNA 1THQA 1G90A 1ZHXA 2FGQX 2IWVA 3O0EA 4N75A 1ZHWA 4D65A 1OPFA 2XE2A 3UU2A 3JTYA 3T24A 7PRNA 5AFUL 3POXA 2XTQA 2XE3A 4FMSA 3RBHA 1YS5A 2ODJA 2Y0KA 2MNHA 5D5DA 3UPGA 2F1TA 3NJTA 3HOLA 4GCSA 3DA3A 1T1LA 4N58A 3JCUO 4RLCA 4C00A 4KR8A 3NSGA 1GFQA 4FUVA 2ERVA 3DA4A 2F1CX 3POUA 3A2SX 4PUXA 4F4BA 2WVPA 2ZLDA 1HXTA 2R4OA 2FGRA 4AKRB 4XNLA 2X9KA 3VZTX 4AKRA 3K19A 4C69X 5AFUK 2R4PA 2K0LA 1ORMA 1ZHYA 3VZUX 2JMMA 4K3BA 4E1SA 4U9CA 4RJWA 2R4LA 2F1VA 2XE5A 2XTRA 2R89A 1Q9GA 3AA7A 4FRXA 3VY8X 1QJ9A 4AYDC 3DWNA 4FSOA 4KRAA 4O3WA 2M07A 1OSMA 2R88A 4AKMA 3PQSA 4FSPA 3WI5A 4N74A 4B61A 4FZMA 3PQUA 4LSFA 2N2LA 3LK3A 4AZLA 4D64A 1PHOA 4BUMX 1BT9A 2J4UP 5GTIO 4AYMC 3AA0B 5IYUA 3AA0A 3AA6B 3PGRA 3AA6A 1MPFA 1S5LO 2JQYA 4AFKA 4AYID 1QJPA 4FRTA 5DL7A 4LSHA 2KC0A 3KZIO 1E54A 4Z3TA 4LSEA
chains in the Genus database with same CATH topology
3POQA 3QRCA 1MM4A 3QRAA 3HW9A 2YNKA 1HXXA 2O4VA 4AYEC 2KXPA 5ADXL 3PORA 2W81C 3T0SA 4FZLA 4GF4A 4FZNA 4AUIA 3AA7B 2N2MA 1GFOA 2KDYA 4GHBA 3G7GA 4JCHA 3VE2A 4O3XB 4AYNA 5DL8A 2XE1A 4G75A 4RLBA 2Y0LA 4LSIA 3TZGA 5GV0A 3LK3B 3WI4A 4RJXA 1GFPA 3T20A 2MHLA 3LK2B 1IZNB 2YPVA 1IZNA 2M06A 2X27X 2KZ7B 3LK2A 2KZ7A 4XNKA 5ADXK 4O3ZA 1H6S1 2XG6A 3LK41 2XMXA 4FESA 1GFMA 1PRNA 2OMFA 4KR4A 3SY9A 2J1NA 2ZFGA 3SYBA 1BXWA 2LHFA 4FOZA 1MM5A 1P4TA 5G26A 2K4TA 1HXUA 2KXPB 1Q9FA 1ZHTA 3HWBA 3SZVA 3VE1A 4O3YA 5DL5A 3C5OA 5FVNA 3GP6A 2W80C 2Y2XA 3PRNA 3HOEA 8PRNA 2PORA 3KVDD 2Y7SA 3FYXA 3EMNX 3SZDA 5DL6A 6PRNA 3AAEB 4FT6A 3AAEA 4JFBA 1BH3A 5PRNA 3AA1B 3AA1A 4QQ1A 5T5FA 1GFNA 4O4XA 4RL9A 3LK42 3SYSA 3UAQA 4GCPA 5JDPA 2GE4A 4O4UA 4GCQA 4O49A 4E1TA 4G76A 2Y0HA 3SY7A 1QJ8A 2QTKA 4D5UA 3AAAB 5EE2A 3AAAA 2LFUA 3V8UA 4N59A 1ZHZA 3VY9X 3VZWX 2PRNA 1THQA 1ZHXA 2FGQX 3O0EA 1ZHWA 4D65A 1OPFA 2XE2A 3UU2A 3JTYA 3T24A 7PRNA 5AFUL 3POXA 2XTQA 2XE3A 4FMSA 3RBHA 1YS5A 2ODJA 2Y0KA 2MNHA 5D5DA 3UPGA 2F1TA 3HOLA 4GCSA 3DA3A 4N58A 4RLCA 4KR8A 3NSGA 1GFQA 4FUVA 2ERVA 3DA4A 3POUA 4PUXA 3A2SX 4F4BA 2ZLDA 1HXTA 2FGRA 4AKRB 4XNLA 3VZTX 4AKRA 3K19A 4C69X 5AFUK 2K0LA 1ORMA 1ZHYA 3VZUX 2JMMA 4E1SA 4U9CA 4RJWA 2XTRA 2F1VA 2XE5A 1Q9GA 3AA7A 4FRXA 3VY8X 1QJ9A 4AYDC 4FSOA 4KRAA 4O3WA 2M07A 1OSMA 4AKMA 3PQSA 4FSPA 3WI5A 4B61A 4FZMA 3PQUA 4LSFA 2N2LA 3LK3A 4AZLA 4D64A 1PHOA 4BUMX 1BT9A 2J4UP 4AYMC 3AA0B 5IYUA 3AA0A 3AA6B 3AA6A 1MPFA 4AFKA 4AYID 1QJPA 4FRTA 5DL7A 4LSHA 2KC0A 1G90A 1E54A 4Z3TA 4LSEA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TZG A; 
#chains in the Genus database with same CATH topology
 4FQE A;  5G38 A;  3POQ A;  2R4N A;  3QRC A;  1MM4 A;  3QRA A;  3HW9 A;  2IWW A;  2YNK A;  3BRY A;  1HXX A;  2O4V A;  4AYE C;  2KXP A;  5ADX L;  3POR A;  2W81 C;  3T0S A;  4FZL A;  3PGU A;  4GF4 A;  4FZN A;  5G3A A;  4AUI A;  3BRZ A;  3AA7 B;  2N2M A;  1GFO A;  2KDY A;  4GHB A;  3G7G A;  4JCH A;  3VE2 A;  4O3X B;  5B5E O;  4AYN A;  5DL8 A;  2XE1 A;  5GTH O;  4G75 A;  4RLB A;  2Y0L A;  4LSI A;  4PJ0 O;  3TZG A;  5GV0 A;  2WJQ A;  3LK3 B;  3WI4 A;  4RJX A;  2AXT O;  1GFP A;  3T20 A;  2MHL A;  3LK2 B;  1IZN B;  2YPV A;  1IZN A;  2M06 A;  2X27 X;  2KZ7 B;  3LK2 A;  2KZ7 A;  4IL6 O;  4UB6 O;  4XNK A;  3WU2 O;  5ADX K;  3BS0 A;  4O3Z A;  1H6S 1;  2XG6 A;  3LK4 1;  2XMX A;  5TIS O;  4FES A;  1GFM A;  1PRN A;  2OMF A;  4KR4 A;  3SY9 A;  2J1N A;  2ZFG A;  3SYB A;  4CTD A;  1BXW A;  5B66 O;  2LHF A;  4FOZ A;  1MM5 A;  5G39 A;  1P4T A;  5G26 A;  2R8A A;  4C4V A;  3PGS A;  2K4T A;  1HXU A;  2KXP B;  1T16 A;  5KAI O;  1Q9F A;  1ZHT A;  3HWB A;  3SZV A;  3VE1 A;  4O3Y A;  5DL5 A;  3C5O A;  5FVN A;  3GP6 A;  4PR7 A;  2W80 C;  2Y2X A;  3PRN A;  3HOE A;  8PRN A;  2POR A;  3KVD D;  2Y7S A;  3FYX A;  3EMN X;  3SZD A;  5DL6 A;  6PRN A;  5H2F O;  3AAE B;  4FT6 A;  3AAE A;  4JFB A;  1BH3 A;  5PRN A;  3AA1 B;  3AA1 A;  4QQ1 A;  4K3C A;  5E79 O;  1GFN A;  4O4X A;  4RL9 A;  5T5F A;  3LK4 2;  3SYS A;  3UAQ A;  2WJR A;  4GCP A;  5JDP A;  2GE4 A;  3A0B O;  4O4U A;  4GCQ A;  4O49 A;  4E1T A;  4G76 A;  3A0H O;  3DZM A;  2Y0H A;  3SY7 A;  1QJ8 A;  5KAF O;  2QTK A;  4D5U A;  3PF1 A;  4UB8 O;  3AAA B;  5EE2 A;  3AAA A;  2LFU A;  4C4V B;  3DWO X;  3V8U A;  4N59 A;  1ZHZ A;  3VY9 X;  3VZW X;  2PRN A;  1THQ A;  1G90 A;  1ZHX A;  2FGQ X;  2IWV A;  3O0E A;  4N75 A;  1ZHW A;  4D65 A;  1OPF A;  2XE2 A;  3UU2 A;  3JTY A;  3T24 A;  7PRN A;  5AFU L;  3POX A;  2XTQ A;  2XE3 A;  4FMS A;  3RBH A;  1YS5 A;  2ODJ A;  2Y0K A;  2MNH A;  5D5D A;  3UPG A;  2F1T A;  3NJT A;  3HOL A;  4GCS A;  3DA3 A;  1T1L A;  4N58 A;  3JCU O;  4RLC A;  4C00 A;  4KR8 A;  3NSG A;  1GFQ A;  4FUV A;  2ERV A;  3DA4 A;  2F1C X;  3POU A;  3A2S X;  4PUX A;  4F4B A;  2WVP A;  2ZLD A;  1HXT A;  2R4O A;  2FGR A;  4AKR B;  4XNL A;  2X9K A;  3VZT X;  4AKR A;  3K19 A;  4C69 X;  5AFU K;  2R4P A;  2K0L A;  1ORM A;  1ZHY A;  3VZU X;  2JMM A;  4K3B A;  4E1S A;  4U9C A;  4RJW A;  2R4L A;  2F1V A;  2XE5 A;  2XTR A;  2R89 A;  1Q9G A;  3AA7 A;  4FRX A;  3VY8 X;  1QJ9 A;  4AYD C;  3DWN A;  4FSO A;  4KRA A;  4O3W A;  2M07 A;  1OSM A;  2R88 A;  4AKM A;  3PQS A;  4FSP A;  3WI5 A;  4N74 A;  4B61 A;  4FZM A;  3PQU A;  4LSF A;  2N2L A;  3LK3 A;  4AZL A;  4D64 A;  1PHO A;  4BUM X;  1BT9 A;  2J4U P;  5GTI O;  4AYM C;  3AA0 B;  5IYU A;  3AA0 A;  3AA6 B;  3PGR A;  3AA6 A;  1MPF A;  1S5L O;  2JQY A;  4AFK A;  4AYI D;  1QJP A;  4FRT A;  5DL7 A;  4LSH A;  2KC0 A;  3KZI O;  1E54 A;  4Z3T A;  4LSE A; 
#chains in the Genus database with same CATH homology
 3POQ A;  3QRC A;  1MM4 A;  3QRA A;  3HW9 A;  2YNK A;  1HXX A;  2O4V A;  4AYE C;  2KXP A;  5ADX L;  3POR A;  2W81 C;  3T0S A;  4FZL A;  4GF4 A;  4FZN A;  4AUI A;  3AA7 B;  2N2M A;  1GFO A;  2KDY A;  4GHB A;  3G7G A;  4JCH A;  3VE2 A;  4O3X B;  4AYN A;  5DL8 A;  2XE1 A;  4G75 A;  4RLB A;  2Y0L A;  4LSI A;  3TZG A;  5GV0 A;  3LK3 B;  3WI4 A;  4RJX A;  1GFP A;  3T20 A;  2MHL A;  3LK2 B;  1IZN B;  2YPV A;  1IZN A;  2M06 A;  2X27 X;  2KZ7 B;  3LK2 A;  2KZ7 A;  4XNK A;  5ADX K;  4O3Z A;  1H6S 1;  2XG6 A;  3LK4 1;  2XMX A;  4FES A;  1GFM A;  1PRN A;  2OMF A;  4KR4 A;  3SY9 A;  2J1N A;  2ZFG A;  3SYB A;  1BXW A;  2LHF A;  4FOZ A;  1MM5 A;  1P4T A;  5G26 A;  2K4T A;  1HXU A;  2KXP B;  1Q9F A;  1ZHT A;  3HWB A;  3SZV A;  3VE1 A;  4O3Y A;  5DL5 A;  3C5O A;  5FVN A;  3GP6 A;  2W80 C;  2Y2X A;  3PRN A;  3HOE A;  8PRN A;  2POR A;  3KVD D;  2Y7S A;  3FYX A;  3EMN X;  3SZD A;  5DL6 A;  6PRN A;  3AAE B;  4FT6 A;  3AAE A;  4JFB A;  1BH3 A;  5PRN A;  3AA1 B;  3AA1 A;  4QQ1 A;  5T5F A;  1GFN A;  4O4X A;  4RL9 A;  3LK4 2;  3SYS A;  3UAQ A;  4GCP A;  5JDP A;  2GE4 A;  4O4U A;  4GCQ A;  4O49 A;  4E1T A;  4G76 A;  2Y0H A;  3SY7 A;  1QJ8 A;  2QTK A;  4D5U A;  3AAA B;  5EE2 A;  3AAA A;  2LFU A;  3V8U A;  4N59 A;  1ZHZ A;  3VY9 X;  3VZW X;  2PRN A;  1THQ A;  1ZHX A;  2FGQ X;  3O0E A;  1ZHW A;  4D65 A;  1OPF A;  2XE2 A;  3UU2 A;  3JTY A;  3T24 A;  7PRN A;  5AFU L;  3POX A;  2XTQ A;  2XE3 A;  4FMS A;  3RBH A;  1YS5 A;  2ODJ A;  2Y0K A;  2MNH A;  5D5D A;  3UPG A;  2F1T A;  3HOL A;  4GCS A;  3DA3 A;  4N58 A;  4RLC A;  4KR8 A;  3NSG A;  1GFQ A;  4FUV A;  2ERV A;  3DA4 A;  3POU A;  4PUX A;  3A2S X;  4F4B A;  2ZLD A;  1HXT A;  2FGR A;  4AKR B;  4XNL A;  3VZT X;  4AKR A;  3K19 A;  4C69 X;  5AFU K;  2K0L A;  1ORM A;  1ZHY A;  3VZU X;  2JMM A;  4E1S A;  4U9C A;  4RJW A;  2XTR A;  2F1V A;  2XE5 A;  1Q9G A;  3AA7 A;  4FRX A;  3VY8 X;  1QJ9 A;  4AYD C;  4FSO A;  4KRA A;  4O3W A;  2M07 A;  1OSM A;  4AKM A;  3PQS A;  4FSP A;  3WI5 A;  4B61 A;  4FZM A;  3PQU A;  4LSF A;  2N2L A;  3LK3 A;  4AZL A;  4D64 A;  1PHO A;  4BUM X;  1BT9 A;  2J4U P;  4AYM C;  3AA0 B;  5IYU A;  3AA0 A;  3AA6 B;  3AA6 A;  1MPF A;  4AFK A;  4AYI D;  1QJP A;  4FRT A;  5DL7 A;  4LSH A;  2KC0 A;  1G90 A;  1E54 A;  4Z3T A;  4LSE A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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