3TZGA

Crystal structure of a porin-like protein (bvu_2266) from bacteroides vulgatus atcc 8482 at 2.80 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
245
structure length
239
Chain Sequence
DTYVTKVTDLTGEEEQVLKLEYDRDGKIIKYGDTPVRYEGDQITIGQMNKLCNVTFQIGKGKARESRARCMLKVGEEVYEADKQTVYDYKGDTIFINSDYRATSDYRFLKKVQGKYVFDQLGRLKEVMTVFTEANDSVSSCHTYYNYDNNINYQANLNLQAYVIDYDGVDSFFYFLLNLGQLRNRTALPNDIGYCMNHGLSTYNVHANYRLDDENPVRIEVLYNYTKLLSRIDLSYNPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords hypothetical protein BVU_2266
publication title Crystal structure of a hypothetical protein BVU_2266 (BVU_2266) from Bacteroides vulgatus ATCC 8482 at 2.80 A resolution
rcsb
source organism Bacteroides vulgatus
molecule tags Structural genomics, unknown function
total genus 54
structure length 239
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-09-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.150 Mainly Beta Beta Barrel Porin Porin 3tzgA00
3TZGA
chains in the Genus database with same CATH superfamily
1PHOA 1THQA 4C4VA 1QJ8A 5ADXK 3HW9A 3T24A 1BT9A 2JMMA 2XE1A 3SZVA 4F4BA 2R89A 1GFOA 1HXXA 3LK42 2F1TA 3LK3B 4AUIA 4C4VB 5GTHO 4FZNA 2R88A 4O3XB 3T20A 2M06A 1PRNA 4FSPA 4D64A 5IYUA 3UPGA 2ODJA 3QRCA 3HOLA 2X9KA 3AA0A 2WJRA 3HOEA 3PQSA 2Y0HA 1IZNA 2XE5A 5FVNA 3PGSA 1MPFA 4LSHA 1ZHXA 3VZUX 2Y0LA 3DWOX 4N74A 2Y2XA 1GFMA 8PRNA 5JDPA 1G90A 2W80C 4D65A 2R4PA 4RJXA 2YNKA 4XNLA 2W81C 3NJTA 1ZHYA 4AZLA 5B66O 4O3WA 2GE4A 3PORA 4AFKA 2MNHA 3QRAA 3C5OA 3BS0A 3SYBA 4RJWA 5G26A 3SZDA 2R4LA 2M07A 3BRYA 4K3BA 1S5LO 1E54A 2O4VA 4FSOA 3AAAA 3AAAB 4FESA 2XE3A 2KXPA 3FYXA 1MM4A 4N59A 4O49A 5PRNA 4AKRA 3PF1A 5KAFO 4K3CA 3PGRA 5G3AA 2KXPB 5DL5A 4AKRB 1QJ9A 1GFQA 4RLBA 2XMXA 3DA3A 4O3YA 2KDYA 5EE2A 6PRNA 4FQEA 1GFNA 1YS5A 1ZHTA 3LK2B 5GTIO 5AFUK 2ZLDA 2X27X 4LSEA 4U9CA 2PORA 2WVPA 4E1TA 2IWWA 4GCSA 3A0HO 3POQA 2ZFGA 1BXWA 4JFBA 4PJ0O 4KR4A 4UB6O 4C00A 4GCPA 1ORMA 3SY7A 1P4TA 4N75A 3WU2O 3BRZA 3AAEB 4QQ1A 3GP6A 3UU2A 3VE2A 4FUVA 3POUA 2WJQA 3KVDD 5E79O 4FZLA 4LSFA 5DL7A 2XG6A 2XTRA 2LFUA 4PUXA 2J1NA 2JQYA 5TISO 5H2FO 2XTQA 2YPVA 3PGUA 3POXA 2ERVA 2PRNA 2QTKA 3WI5A 4AYDC 1ZHZA 3V8UA 2Y7SA 2N2LA 3DA4A 3VY8X 3VZWX 4KR8A 1QJPA 4RLCA 3EMNX 2OMFA 1H6S1 1ZHWA 3SY9A 3LK2A 5D5DA 4O4XA 5AFUL 4FRTA 1HXUA 3DZMA 4CTDA 5DL8A 1HXTA 3KZIO 4AYEC 4AKMA 4FRXA 2J4UP 4LSIA 2IWVA 4G76A 4IL6O 2XE2A 1MM5A 3PQUA 2R8AA 3LK41 4PR7A 3AAEA 7PRNA 4RL9A 3AA1A 3AA6A 1T16A 3A2SX 4GF4A 4UB8O 2F1CX 3AA7A 4BUMX 3G7GA 3AA1B 4AYID 3AA6B 1Q9FA 2R4OA 3PRNA 2FGQX 5B5EO 3JTYA 3AA7B 4G75A 5G39A 4FOZA 4XNKA 4C69X 3VY9X 2FGRA 4N58A 2KZ7A 2LHFA 3VZTX 1OPFA 2R4NA 4FT6A 5G38A 3O0EA 3JCUO 4E1SA 4AYMC 5DL6A 2KZ7B 3K19A 4KRAA 3AA0B 5GV0A 3DWNA 3VE1A 1GFPA 1IZNB 3UAQA 1OSMA 4FMSA 4GCQA 4O3ZA 5KAIO 3RBHA 3SYSA 3HWBA 2K0LA 4AYNA 4B61A 1BH3A 2K4TA 2KC0A 2AXTO 3A0BO 5T5FA 1T1LA 1Q9GA 2MHLA 4FZMA 2N2MA 3NSGA 5ADXL 3TZGA 2Y0KA 4GHBA 3WI4A 4JCHA 4O4UA 4Z3TA 2F1VA 4D5UA 3LK3A 3T0SA
chains in the Genus database with same CATH topology
1PHOA 1THQA 1QJ8A 5ADXK 3HW9A 3T24A 1BT9A 2JMMA 2XE1A 3SZVA 4F4BA 3LK3B 1GFOA 1HXXA 3LK42 2F1TA 4AUIA 4FZNA 4O3XB 3T20A 2M06A 1PRNA 4FSPA 4D64A 5IYUA 3UPGA 2ODJA 3QRCA 3HOLA 3AA0A 3HOEA 3PQSA 2Y0HA 1IZNA 2XE5A 5FVNA 1MPFA 4LSHA 1ZHXA 3VZUX 2Y0LA 2Y2XA 1GFMA 8PRNA 5JDPA 1G90A 2W80C 4D65A 4RJXA 2YNKA 4XNLA 2W81C 4AZLA 1ZHYA 4O3WA 2GE4A 3PORA 4AFKA 2MNHA 3QRAA 3C5OA 3SYBA 4RJWA 5G26A 3SZDA 2M07A 2O4VA 1E54A 4FSOA 3AAAA 3AAAB 4FESA 2XE3A 2KXPA 3FYXA 1MM4A 4N59A 4O49A 5PRNA 4AKRA 2KXPB 5DL5A 4AKRB 1QJ9A 1GFQA 4RLBA 2XMXA 3DA3A 4O3YA 2KDYA 5EE2A 6PRNA 1GFNA 1YS5A 1ZHTA 3LK2B 5AFUK 2ZLDA 2X27X 4LSEA 4U9CA 2PORA 4E1TA 4GCSA 3POQA 2ZFGA 1BXWA 4JFBA 4KR4A 4GCPA 1ORMA 3SY7A 1P4TA 3AAEB 4QQ1A 3GP6A 3UU2A 3VE2A 4FUVA 3POUA 3KVDD 4FZLA 4LSFA 5DL7A 2XG6A 2XTRA 2LFUA 4PUXA 2J1NA 2XTQA 2YPVA 3POXA 2ERVA 2PRNA 2QTKA 3WI5A 4AYDC 1ZHZA 3V8UA 2Y7SA 2N2LA 3DA4A 3VY8X 3VZWX 4KR8A 1QJPA 4RLCA 3EMNX 2OMFA 1H6S1 1ZHWA 3SY9A 3LK2A 5D5DA 4O4XA 5AFUL 4FRTA 1HXUA 5DL8A 1HXTA 4AYEC 4AKMA 4FRXA 2J4UP 4LSIA 4G76A 2XE2A 1MM5A 3PQUA 3LK41 3AAEA 7PRNA 4RL9A 3AA1A 3AA6A 3A2SX 4GF4A 3AA7A 4BUMX 3G7GA 3AA1B 4AYID 3AA6B 1Q9FA 3PRNA 2FGQX 3JTYA 3AA7B 4G75A 4FOZA 4XNKA 4C69X 3VY9X 2FGRA 4N58A 2KZ7A 2LHFA 3VZTX 1OPFA 4FT6A 3O0EA 4E1SA 4AYMC 5DL6A 2KZ7B 3K19A 4KRAA 3AA0B 5GV0A 3VE1A 1GFPA 1IZNB 3UAQA 1OSMA 4FMSA 4GCQA 4O3ZA 3RBHA 3SYSA 3HWBA 2K0LA 4AYNA 4B61A 1BH3A 2K4TA 2KC0A 5T5FA 1Q9GA 2MHLA 4FZMA 2N2MA 3NSGA 5ADXL 3TZGA 2Y0KA 4GHBA 3WI4A 4JCHA 4O4UA 4Z3TA 2F1VA 4D5UA 3LK3A 3T0SA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TZG A; 
#chains in the Genus database with same CATH topology
 1PHO A;  1THQ A;  4C4V A;  1QJ8 A;  5ADX K;  3HW9 A;  3T24 A;  1BT9 A;  2JMM A;  2XE1 A;  3SZV A;  4F4B A;  2R89 A;  1GFO A;  1HXX A;  3LK4 2;  2F1T A;  3LK3 B;  4AUI A;  4C4V B;  5GTH O;  4FZN A;  2R88 A;  4O3X B;  3T20 A;  2M06 A;  1PRN A;  4FSP A;  4D64 A;  5IYU A;  3UPG A;  2ODJ A;  3QRC A;  3HOL A;  2X9K A;  3AA0 A;  2WJR A;  3HOE A;  3PQS A;  2Y0H A;  1IZN A;  2XE5 A;  5FVN A;  3PGS A;  1MPF A;  4LSH A;  1ZHX A;  3VZU X;  2Y0L A;  3DWO X;  4N74 A;  2Y2X A;  1GFM A;  8PRN A;  5JDP A;  1G90 A;  2W80 C;  4D65 A;  2R4P A;  4RJX A;  2YNK A;  4XNL A;  2W81 C;  3NJT A;  1ZHY A;  4AZL A;  5B66 O;  4O3W A;  2GE4 A;  3POR A;  4AFK A;  2MNH A;  3QRA A;  3C5O A;  3BS0 A;  3SYB A;  4RJW A;  5G26 A;  3SZD A;  2R4L A;  2M07 A;  3BRY A;  4K3B A;  1S5L O;  1E54 A;  2O4V A;  4FSO A;  3AAA A;  3AAA B;  4FES A;  2XE3 A;  2KXP A;  3FYX A;  1MM4 A;  4N59 A;  4O49 A;  5PRN A;  4AKR A;  3PF1 A;  5KAF O;  4K3C A;  3PGR A;  5G3A A;  2KXP B;  5DL5 A;  4AKR B;  1QJ9 A;  1GFQ A;  4RLB A;  2XMX A;  3DA3 A;  4O3Y A;  2KDY A;  5EE2 A;  6PRN A;  4FQE A;  1GFN A;  1YS5 A;  1ZHT A;  3LK2 B;  5GTI O;  5AFU K;  2ZLD A;  2X27 X;  4LSE A;  4U9C A;  2POR A;  2WVP A;  4E1T A;  2IWW A;  4GCS A;  3A0H O;  3POQ A;  2ZFG A;  1BXW A;  4JFB A;  4PJ0 O;  4KR4 A;  4UB6 O;  4C00 A;  4GCP A;  1ORM A;  3SY7 A;  1P4T A;  4N75 A;  3WU2 O;  3BRZ A;  3AAE B;  4QQ1 A;  3GP6 A;  3UU2 A;  3VE2 A;  4FUV A;  3POU A;  2WJQ A;  3KVD D;  5E79 O;  4FZL A;  4LSF A;  5DL7 A;  2XG6 A;  2XTR A;  2LFU A;  4PUX A;  2J1N A;  2JQY A;  5TIS O;  5H2F O;  2XTQ A;  2YPV A;  3PGU A;  3POX A;  2ERV A;  2PRN A;  2QTK A;  3WI5 A;  4AYD C;  1ZHZ A;  3V8U A;  2Y7S A;  2N2L A;  3DA4 A;  3VY8 X;  3VZW X;  4KR8 A;  1QJP A;  4RLC A;  3EMN X;  2OMF A;  1H6S 1;  1ZHW A;  3SY9 A;  3LK2 A;  5D5D A;  4O4X A;  5AFU L;  4FRT A;  1HXU A;  3DZM A;  4CTD A;  5DL8 A;  1HXT A;  3KZI O;  4AYE C;  4AKM A;  4FRX A;  2J4U P;  4LSI A;  2IWV A;  4G76 A;  4IL6 O;  2XE2 A;  1MM5 A;  3PQU A;  2R8A A;  3LK4 1;  4PR7 A;  3AAE A;  7PRN A;  4RL9 A;  3AA1 A;  3AA6 A;  1T16 A;  3A2S X;  4GF4 A;  4UB8 O;  2F1C X;  3AA7 A;  4BUM X;  3G7G A;  3AA1 B;  4AYI D;  3AA6 B;  1Q9F A;  2R4O A;  3PRN A;  2FGQ X;  5B5E O;  3JTY A;  3AA7 B;  4G75 A;  5G39 A;  4FOZ A;  4XNK A;  4C69 X;  3VY9 X;  2FGR A;  4N58 A;  2KZ7 A;  2LHF A;  3VZT X;  1OPF A;  2R4N A;  4FT6 A;  5G38 A;  3O0E A;  3JCU O;  4E1S A;  4AYM C;  5DL6 A;  2KZ7 B;  3K19 A;  4KRA A;  3AA0 B;  5GV0 A;  3DWN A;  3VE1 A;  1GFP A;  1IZN B;  3UAQ A;  1OSM A;  4FMS A;  4GCQ A;  4O3Z A;  5KAI O;  3RBH A;  3SYS A;  3HWB A;  2K0L A;  4AYN A;  4B61 A;  1BH3 A;  2K4T A;  2KC0 A;  2AXT O;  3A0B O;  5T5F A;  1T1L A;  1Q9G A;  2MHL A;  4FZM A;  2N2M A;  3NSG A;  5ADX L;  3TZG A;  2Y0K A;  4GHB A;  3WI4 A;  4JCH A;  4O4U A;  4Z3T A;  2F1V A;  4D5U A;  3LK3 A;  3T0S A; 
#chains in the Genus database with same CATH homology
 1PHO A;  1THQ A;  1QJ8 A;  5ADX K;  3HW9 A;  3T24 A;  1BT9 A;  2JMM A;  2XE1 A;  3SZV A;  4F4B A;  3LK3 B;  1GFO A;  1HXX A;  3LK4 2;  2F1T A;  4AUI A;  4FZN A;  4O3X B;  3T20 A;  2M06 A;  1PRN A;  4FSP A;  4D64 A;  5IYU A;  3UPG A;  2ODJ A;  3QRC A;  3HOL A;  3AA0 A;  3HOE A;  3PQS A;  2Y0H A;  1IZN A;  2XE5 A;  5FVN A;  1MPF A;  4LSH A;  1ZHX A;  3VZU X;  2Y0L A;  2Y2X A;  1GFM A;  8PRN A;  5JDP A;  1G90 A;  2W80 C;  4D65 A;  4RJX A;  2YNK A;  4XNL A;  2W81 C;  4AZL A;  1ZHY A;  4O3W A;  2GE4 A;  3POR A;  4AFK A;  2MNH A;  3QRA A;  3C5O A;  3SYB A;  4RJW A;  5G26 A;  3SZD A;  2M07 A;  2O4V A;  1E54 A;  4FSO A;  3AAA A;  3AAA B;  4FES A;  2XE3 A;  2KXP A;  3FYX A;  1MM4 A;  4N59 A;  4O49 A;  5PRN A;  4AKR A;  2KXP B;  5DL5 A;  4AKR B;  1QJ9 A;  1GFQ A;  4RLB A;  2XMX A;  3DA3 A;  4O3Y A;  2KDY A;  5EE2 A;  6PRN A;  1GFN A;  1YS5 A;  1ZHT A;  3LK2 B;  5AFU K;  2ZLD A;  2X27 X;  4LSE A;  4U9C A;  2POR A;  4E1T A;  4GCS A;  3POQ A;  2ZFG A;  1BXW A;  4JFB A;  4KR4 A;  4GCP A;  1ORM A;  3SY7 A;  1P4T A;  3AAE B;  4QQ1 A;  3GP6 A;  3UU2 A;  3VE2 A;  4FUV A;  3POU A;  3KVD D;  4FZL A;  4LSF A;  5DL7 A;  2XG6 A;  2XTR A;  2LFU A;  4PUX A;  2J1N A;  2XTQ A;  2YPV A;  3POX A;  2ERV A;  2PRN A;  2QTK A;  3WI5 A;  4AYD C;  1ZHZ A;  3V8U A;  2Y7S A;  2N2L A;  3DA4 A;  3VY8 X;  3VZW X;  4KR8 A;  1QJP A;  4RLC A;  3EMN X;  2OMF A;  1H6S 1;  1ZHW A;  3SY9 A;  3LK2 A;  5D5D A;  4O4X A;  5AFU L;  4FRT A;  1HXU A;  5DL8 A;  1HXT A;  4AYE C;  4AKM A;  4FRX A;  2J4U P;  4LSI A;  4G76 A;  2XE2 A;  1MM5 A;  3PQU A;  3LK4 1;  3AAE A;  7PRN A;  4RL9 A;  3AA1 A;  3AA6 A;  3A2S X;  4GF4 A;  3AA7 A;  4BUM X;  3G7G A;  3AA1 B;  4AYI D;  3AA6 B;  1Q9F A;  3PRN A;  2FGQ X;  3JTY A;  3AA7 B;  4G75 A;  4FOZ A;  4XNK A;  4C69 X;  3VY9 X;  2FGR A;  4N58 A;  2KZ7 A;  2LHF A;  3VZT X;  1OPF A;  4FT6 A;  3O0E A;  4E1S A;  4AYM C;  5DL6 A;  2KZ7 B;  3K19 A;  4KRA A;  3AA0 B;  5GV0 A;  3VE1 A;  1GFP A;  1IZN B;  3UAQ A;  1OSM A;  4FMS A;  4GCQ A;  4O3Z A;  3RBH A;  3SYS A;  3HWB A;  2K0L A;  4AYN A;  4B61 A;  1BH3 A;  2K4T A;  2KC0 A;  5T5F A;  1Q9G A;  2MHL A;  4FZM A;  2N2M A;  3NSG A;  5ADX L;  3TZG A;  2Y0K A;  4GHB A;  3WI4 A;  4JCH A;  4O4U A;  4Z3T A;  2F1V A;  4D5U A;  3LK3 A;  3T0S A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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