3TZGA

Crystal structure of a porin-like protein (bvu_2266) from bacteroides vulgatus atcc 8482 at 2.80 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
245
structure length
239
Chain Sequence
b'DTYVTKVTDLTGEEEQVLKLEYDRDGKIIKYGDTPVRYEGDQITIGQMNKLCNVTFQIGKGKARESRARCMLKVGEEVYEADKQTVYDYKGDTIFINSDYRATSDYRFLKKVQGKYVFDQLGRLKEVMTVFTEANDSVSSCHTYYNYDNNINYQANLNLQAYVIDYDGVDSFFYFLLNLGQLRNRTALPNDIGYCMNHGLSTYNVHANYRLDDENPVRIEVLYNYTKLLSRIDLSYNPL'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hypothetical protein BVU_2266 (BVU_2266) from Bacteroides vulgatus ATCC 8482 at 2.80 A resolution
rcsb
molecule keywords hypothetical protein BVU_2266
source organism Bacteroides vulgatus
molecule tags Structural genomics, unknown function
total genus 54
structure length 239
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-09-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.150 Mainly Beta Beta Barrel Porin Porin 3tzgA00
3TZGA
chains in the Genus database with same CATH superfamily
4RJXA 1E54A 3LK3A 4KR4A 5TISO 2ZLDA 4O49A 4K3BA 4AKRB 2XE1A 3AAEA 4N59A 5KAFO 1PHOA 3A0HO 4AKRA 2J4UP 2YPVA 1BXWA 4G75A 2R88A 5G3AA 4C00A 3NJTA 2PORA 5G39A 2X9KA 4RLBA 2XE5A 1GFMA 4G76A 4KRAA 1ZHXA 3A2SX 2XG6A 3JTYA 3AA7A 3QRAA 2K4TA 4GHBA 4O4UA 3VY9X 4C4VB 3VE2A 4C4VA 1GFOA 1GFPA 3DA4A 2W81C 5DL8A 7PRNA 1HXTA 2N2MA 2LHFA 2OMFA 2MHLA 2WJQA 4D65A 2XMXA 4LSEA 3T24A 3PGUA 3PRNA 4B61A 3AA1B 2PRNA 4GCQA 3VZUX 1H6S1 4BUMX 4E1TA 5ADXL 4FQEA 4GCSA 4PJ0O 2R4OA 5DL7A 6PRNA 5EE2A 4XNKA 2WVPA 5GV0A 4O3XB 4AYDC 3KVDD 2N2LA 4O3YA 4CTDA 3BRYA 4O3ZA 1YS5A 5H2FO 3O0EA 3GP6A 3A0BO 4PR7A 5DL6A 3T20A 2ODJA 3BS0A 3T0SA 4KR8A 2Y2XA 3WI4A 3LK41 3PORA 3UU2A 4LSHA 3VY8X 5G38A 2R4NA 1Q9GA 1T16A 4AKMA 4FZNA 4RJWA 5IYUA 3BRZA 4AFKA 1Q9FA 5FVNA 2F1TA 2Y0KA 2R4LA 4FSPA 5D5DA 3PF1A 3VZWX 4N75A 4GF4A 1MM5A 1MPFA 1G90A 1HXUA 3EMNX 1PRNA 4QQ1A 2JMMA 3LK2B 3LK2A 3POUA 3VZTX 2M07A 1BT9A 3HOLA 3NSGA 3WU2O 3AA1A 4AYNA 2MNHA 4Z3TA 1ZHYA 2R89A 1P4TA 1T1LA 4FESA 3QRCA 4UB8O 3VE1A 4RLCA 5B5EO 2M06A 4F4BA 2YNKA 2O4VA 3AA0B 3PQUA 3AA0A 4LSFA 5E79O 5GTIO 3SZDA 5AFUK 3JCUO 1HXXA 3PGRA 5PRNA 2R4PA 2KDYA 3DZMA 4FSOA 4AYID 1QJ9A 3AAAB 4N58A 4O4XA 4FUVA 3WI5A 2KZ7B 3SYSA 3HOEA 3HWBA 2KXPB 2KZ7A 1GFNA 2XTQA 2R8AA 2KXPA 4K3CA 5G26A 1IZNB 4FMSA 4AUIA 1IZNA 4N74A 2X27X 3POXA 3DA3A 8PRNA 3PGSA 5ADXK 2FGRA 5KAIO 2QTKA 1THQA 2XTRA 3KZIO 3DWOX 1OPFA 4XNLA 3RBHA 4AYMC 2ZFGA 2J1NA 3FYXA 1ORMA 4JFBA 5AFUL 2IWWA 5DL5A 3AAEB 4JCHA 2F1CX 3K19A 3TZGA 3G7GA 3C5OA 4U9CA 3SZVA 3AA6B 3LK42 2Y0LA 4D5UA 3AA6A 3UAQA 4FOZA 4IL6O 3AA7B 4AYEC 5GTHO 1ZHWA 4FZLA 4UB6O 5T5FA 4FRXA 2Y0HA 2ERVA 4FT6A 2WJRA 2K0LA 2XE2A 1QJ8A 4FZMA 4LSIA 2JQYA 3POQA 1S5LO 5JDPA 1ZHTA 4GCPA 1OSMA 3SYBA 4C69X 2KC0A 3SY7A 1MM4A 4PUXA 3AAAA 3SY9A 2LFUA 3PQSA 3V8UA 2F1VA 1BH3A 1ZHZA 3DWNA 2Y7SA 3UPGA 2FGQX 4D64A 1GFQA 2XE3A 4E1SA 1QJPA 3HW9A 2GE4A 4FRTA 2IWVA 4O3WA 4RL9A 5B66O 2W80C 4AZLA 2AXTO 3LK3B
chains in the Genus database with same CATH topology
4RJXA 1E54A 3LK3A 4KR4A 2ZLDA 4O49A 4AKRB 2XE1A 3AAEA 4N59A 1PHOA 4AKRA 2J4UP 2YPVA 1BXWA 4G75A 2PORA 4RLBA 2XE5A 1GFMA 4G76A 4KRAA 1ZHXA 3A2SX 2XG6A 3JTYA 3AA7A 3QRAA 2K4TA 4GHBA 4O4UA 3VY9X 5AFUL 3VE2A 1GFOA 1GFPA 3DA4A 2W81C 5DL8A 7PRNA 1HXTA 2N2MA 2LHFA 2OMFA 2MHLA 4D65A 2XMXA 4LSEA 3T24A 4BUMX 3PRNA 4B61A 3AA1B 2PRNA 4GCQA 3VZUX 1H6S1 4E1TA 5ADXL 5DL7A 4GCSA 6PRNA 5EE2A 4XNKA 5GV0A 4O3XB 4AYDC 3KVDD 2N2LA 4O3YA 4O3ZA 1YS5A 3O0EA 3GP6A 5DL6A 3T20A 2ODJA 3T0SA 4KR8A 2Y2XA 3WI4A 3LK41 3PORA 3UU2A 4LSHA 3VY8X 4AKMA 1Q9GA 4FZNA 4RJWA 5IYUA 4AFKA 1Q9FA 5FVNA 2F1TA 2Y0KA 4FSPA 5D5DA 3VZWX 4C69X 4GF4A 1MM5A 1MPFA 1G90A 1HXUA 3EMNX 1PRNA 4QQ1A 2JMMA 3LK2B 3LK2A 3POUA 3VZTX 2M07A 1BT9A 3HOLA 3NSGA 3AA1A 4AYNA 2MNHA 4Z3TA 1ZHYA 1P4TA 4FESA 3QRCA 3VE1A 4RLCA 2M06A 4F4BA 2YNKA 2O4VA 3AA0B 3PQUA 3AA0A 4LSFA 3SZDA 5AFUK 1HXXA 5PRNA 2KDYA 4FSOA 4AYID 1QJ9A 3AAAB 4N58A 4O4XA 4FUVA 3WI5A 2KZ7B 3SYSA 3HOEA 3HWBA 2KXPB 2KZ7A 1GFNA 5G26A 2KXPA 1IZNB 4FMSA 4AUIA 1IZNA 2X27X 3POXA 3DA3A 8PRNA 5ADXK 2FGRA 2QTKA 1THQA 2XTRA 4AYMC 1OPFA 4XNLA 2ZFGA 2J1NA 3FYXA 1ORMA 4JFBA 5DL5A 3AAEB 4JCHA 3K19A 3TZGA 3G7GA 3C5OA 4U9CA 3SZVA 3AA6B 3LK42 2Y0LA 4D5UA 3AA6A 3UAQA 4FOZA 3AA7B 4AYEC 1ZHWA 4FZLA 5T5FA 4FRXA 2Y0HA 2ERVA 4FT6A 4LSIA 2K0LA 2XE2A 1QJ8A 4FZMA 5JDPA 3POQA 1ZHTA 4GCPA 1OSMA 3SYBA 2KC0A 3SY7A 1MM4A 4PUXA 3AAAA 3SY9A 2LFUA 3PQSA 3V8UA 2F1VA 1BH3A 1ZHZA 2Y7SA 3UPGA 2FGQX 4D64A 2XE3A 1GFQA 4E1SA 1QJPA 3HW9A 2GE4A 4FRTA 4RL9A 4O3WA 3RBHA 2W80C 4AZLA 2XTQA 3LK3B
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TZG A; 
#chains in the Genus database with same CATH topology
 4RJX A;  1E54 A;  3LK3 A;  4KR4 A;  5TIS O;  2ZLD A;  4O49 A;  4K3B A;  4AKR B;  2XE1 A;  3AAE A;  4N59 A;  5KAF O;  1PHO A;  3A0H O;  4AKR A;  2J4U P;  2YPV A;  1BXW A;  4G75 A;  2R88 A;  5G3A A;  4C00 A;  3NJT A;  2POR A;  5G39 A;  2X9K A;  4RLB A;  2XE5 A;  1GFM A;  4G76 A;  4KRA A;  1ZHX A;  3A2S X;  2XG6 A;  3JTY A;  3AA7 A;  3QRA A;  2K4T A;  4GHB A;  4O4U A;  3VY9 X;  4C4V B;  3VE2 A;  4C4V A;  1GFO A;  1GFP A;  3DA4 A;  2W81 C;  5DL8 A;  7PRN A;  1HXT A;  2N2M A;  2LHF A;  2OMF A;  2MHL A;  2WJQ A;  4D65 A;  2XMX A;  4LSE A;  3T24 A;  3PGU A;  3PRN A;  4B61 A;  3AA1 B;  2PRN A;  4GCQ A;  3VZU X;  1H6S 1;  4BUM X;  4E1T A;  5ADX L;  4FQE A;  4GCS A;  4PJ0 O;  2R4O A;  5DL7 A;  6PRN A;  5EE2 A;  4XNK A;  2WVP A;  5GV0 A;  4O3X B;  4AYD C;  3KVD D;  2N2L A;  4O3Y A;  4CTD A;  3BRY A;  4O3Z A;  1YS5 A;  5H2F O;  3O0E A;  3GP6 A;  3A0B O;  4PR7 A;  5DL6 A;  3T20 A;  2ODJ A;  3BS0 A;  3T0S A;  4KR8 A;  2Y2X A;  3WI4 A;  3LK4 1;  3POR A;  3UU2 A;  4LSH A;  3VY8 X;  5G38 A;  2R4N A;  1Q9G A;  1T16 A;  4AKM A;  4FZN A;  4RJW A;  5IYU A;  3BRZ A;  4AFK A;  1Q9F A;  5FVN A;  2F1T A;  2Y0K A;  2R4L A;  4FSP A;  5D5D A;  3PF1 A;  3VZW X;  4N75 A;  4GF4 A;  1MM5 A;  1MPF A;  1G90 A;  1HXU A;  3EMN X;  1PRN A;  4QQ1 A;  2JMM A;  3LK2 B;  3LK2 A;  3POU A;  3VZT X;  2M07 A;  1BT9 A;  3HOL A;  3NSG A;  3WU2 O;  3AA1 A;  4AYN A;  2MNH A;  4Z3T A;  1ZHY A;  2R89 A;  1P4T A;  1T1L A;  4FES A;  3QRC A;  4UB8 O;  3VE1 A;  4RLC A;  5B5E O;  2M06 A;  4F4B A;  2YNK A;  2O4V A;  3AA0 B;  3PQU A;  3AA0 A;  4LSF A;  5E79 O;  5GTI O;  3SZD A;  5AFU K;  3JCU O;  1HXX A;  3PGR A;  5PRN A;  2R4P A;  2KDY A;  3DZM A;  4FSO A;  4AYI D;  1QJ9 A;  3AAA B;  4N58 A;  4O4X A;  4FUV A;  3WI5 A;  2KZ7 B;  3SYS A;  3HOE A;  3HWB A;  2KXP B;  2KZ7 A;  1GFN A;  2XTQ A;  2R8A A;  2KXP A;  4K3C A;  5G26 A;  1IZN B;  4FMS A;  4AUI A;  1IZN A;  4N74 A;  2X27 X;  3POX A;  3DA3 A;  8PRN A;  3PGS A;  5ADX K;  2FGR A;  5KAI O;  2QTK A;  1THQ A;  2XTR A;  3KZI O;  3DWO X;  1OPF A;  4XNL A;  3RBH A;  4AYM C;  2ZFG A;  2J1N A;  3FYX A;  1ORM A;  4JFB A;  5AFU L;  2IWW A;  5DL5 A;  3AAE B;  4JCH A;  2F1C X;  3K19 A;  3TZG A;  3G7G A;  3C5O A;  4U9C A;  3SZV A;  3AA6 B;  3LK4 2;  2Y0L A;  4D5U A;  3AA6 A;  3UAQ A;  4FOZ A;  4IL6 O;  3AA7 B;  4AYE C;  5GTH O;  1ZHW A;  4FZL A;  4UB6 O;  5T5F A;  4FRX A;  2Y0H A;  2ERV A;  4FT6 A;  2WJR A;  2K0L A;  2XE2 A;  1QJ8 A;  4FZM A;  4LSI A;  2JQY A;  3POQ A;  1S5L O;  5JDP A;  1ZHT A;  4GCP A;  1OSM A;  3SYB A;  4C69 X;  2KC0 A;  3SY7 A;  1MM4 A;  4PUX A;  3AAA A;  3SY9 A;  2LFU A;  3PQS A;  3V8U A;  2F1V A;  1BH3 A;  1ZHZ A;  3DWN A;  2Y7S A;  3UPG A;  2FGQ X;  4D64 A;  1GFQ A;  2XE3 A;  4E1S A;  1QJP A;  3HW9 A;  2GE4 A;  4FRT A;  2IWV A;  4O3W A;  4RL9 A;  5B66 O;  2W80 C;  4AZL A;  2AXT O;  3LK3 B; 
#chains in the Genus database with same CATH homology
 4RJX A;  1E54 A;  3LK3 A;  4KR4 A;  2ZLD A;  4O49 A;  4AKR B;  2XE1 A;  3AAE A;  4N59 A;  1PHO A;  4AKR A;  2J4U P;  2YPV A;  1BXW A;  4G75 A;  2POR A;  4RLB A;  2XE5 A;  1GFM A;  4G76 A;  4KRA A;  1ZHX A;  3A2S X;  2XG6 A;  3JTY A;  3AA7 A;  3QRA A;  2K4T A;  4GHB A;  4O4U A;  3VY9 X;  5AFU L;  3VE2 A;  1GFO A;  1GFP A;  3DA4 A;  2W81 C;  5DL8 A;  7PRN A;  1HXT A;  2N2M A;  2LHF A;  2OMF A;  2MHL A;  4D65 A;  2XMX A;  4LSE A;  3T24 A;  4BUM X;  3PRN A;  4B61 A;  3AA1 B;  2PRN A;  4GCQ A;  3VZU X;  1H6S 1;  4E1T A;  5ADX L;  5DL7 A;  4GCS A;  6PRN A;  5EE2 A;  4XNK A;  5GV0 A;  4O3X B;  4AYD C;  3KVD D;  2N2L A;  4O3Y A;  4O3Z A;  1YS5 A;  3O0E A;  3GP6 A;  5DL6 A;  3T20 A;  2ODJ A;  3T0S A;  4KR8 A;  2Y2X A;  3WI4 A;  3LK4 1;  3POR A;  3UU2 A;  4LSH A;  3VY8 X;  4AKM A;  1Q9G A;  4FZN A;  4RJW A;  5IYU A;  4AFK A;  1Q9F A;  5FVN A;  2F1T A;  2Y0K A;  4FSP A;  5D5D A;  3VZW X;  4C69 X;  4GF4 A;  1MM5 A;  1MPF A;  1G90 A;  1HXU A;  3EMN X;  1PRN A;  4QQ1 A;  2JMM A;  3LK2 B;  3LK2 A;  3POU A;  3VZT X;  2M07 A;  1BT9 A;  3HOL A;  3NSG A;  3AA1 A;  4AYN A;  2MNH A;  4Z3T A;  1ZHY A;  1P4T A;  4FES A;  3QRC A;  3VE1 A;  4RLC A;  2M06 A;  4F4B A;  2YNK A;  2O4V A;  3AA0 B;  3PQU A;  3AA0 A;  4LSF A;  3SZD A;  5AFU K;  1HXX A;  5PRN A;  2KDY A;  4FSO A;  4AYI D;  1QJ9 A;  3AAA B;  4N58 A;  4O4X A;  4FUV A;  3WI5 A;  2KZ7 B;  3SYS A;  3HOE A;  3HWB A;  2KXP B;  2KZ7 A;  1GFN A;  5G26 A;  2KXP A;  1IZN B;  4FMS A;  4AUI A;  1IZN A;  2X27 X;  3POX A;  3DA3 A;  8PRN A;  5ADX K;  2FGR A;  2QTK A;  1THQ A;  2XTR A;  4AYM C;  1OPF A;  4XNL A;  2ZFG A;  2J1N A;  3FYX A;  1ORM A;  4JFB A;  5DL5 A;  3AAE B;  4JCH A;  3K19 A;  3TZG A;  3G7G A;  3C5O A;  4U9C A;  3SZV A;  3AA6 B;  3LK4 2;  2Y0L A;  4D5U A;  3AA6 A;  3UAQ A;  4FOZ A;  3AA7 B;  4AYE C;  1ZHW A;  4FZL A;  5T5F A;  4FRX A;  2Y0H A;  2ERV A;  4FT6 A;  4LSI A;  2K0L A;  2XE2 A;  1QJ8 A;  4FZM A;  5JDP A;  3POQ A;  1ZHT A;  4GCP A;  1OSM A;  3SYB A;  2KC0 A;  3SY7 A;  1MM4 A;  4PUX A;  3AAA A;  3SY9 A;  2LFU A;  3PQS A;  3V8U A;  2F1V A;  1BH3 A;  1ZHZ A;  2Y7S A;  3UPG A;  2FGQ X;  4D64 A;  2XE3 A;  1GFQ A;  4E1S A;  1QJP A;  3HW9 A;  2GE4 A;  4FRT A;  4RL9 A;  4O3W A;  3RBH A;  2W80 C;  4AZL A;  2XTQ A;  3LK3 B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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