3TZGA

Crystal structure of a porin-like protein (bvu_2266) from bacteroides vulgatus atcc 8482 at 2.80 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
245
structure length
239
Chain Sequence
DTYVTKVTDLTGEEEQVLKLEYDRDGKIIKYGDTPVRYEGDQITIGQMNKLCNVTFQIGKGKARESRARCMLKVGEEVYEADKQTVYDYKGDTIFINSDYRATSDYRFLKKVQGKYVFDQLGRLKEVMTVFTEANDSVSSCHTYYNYDNNINYQANLNLQAYVIDYDGVDSFFYFLLNLGQLRNRTALPNDIGYCMNHGLSTYNVHANYRLDDENPVRIEVLYNYTKLLSRIDLSYNPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of a hypothetical protein BVU_2266 (BVU_2266) from Bacteroides vulgatus ATCC 8482 at 2.80 A resolution
rcsb
source organism Bacteroides vulgatus
molecule tags Structural genomics, unknown function
molecule keywords hypothetical protein BVU_2266
total genus 54
structure length 239
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-09-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.150 Mainly Beta Beta Barrel Porin Porin 3tzgA00
3TZGA
chains in the Genus database with same CATH superfamily
1MPFA 2R4NA 5B66O 5KAFO 4C4VA 4F4BA 4LSFA 4PJ0O 3PORA 2XE5A 3QRAA 4FMSA 4E1TA 2X27X 3AA1A 2M06A 2MNHA 1ZHTA 2AXTO 1YS5A 3POUA 2KZ7B 3JCUO 1GFPA 4AUIA 4AKRA 3PGSA 3HWBA 2WJRA 5KAIO 4LSHA 3RBHA 4D65A 3BRYA 2FGRA 4FQEA 4O3ZA 2R4LA 2X9KA 4FZMA 3AAAB 3DWNA 5T5FA 3SYBA 4G76A 3BRZA 4U9CA 4N75A 3HOEA 4C00A 2XMXA 3LK3B 4FRXA 3KVDD 4PR7A 5DL6A 1MM4A 3DA3A 6PRNA 4PUXA 4GCPA 3LK42 5FVNA 5D5DA 2OMFA 1THQA 2M07A 1H6S1 4K3BA 4AYID 3PGUA 2O4VA 2R8AA 2J1NA 2XTRA 3HOLA 4AZLA 3POQA 4FUVA 3VE1A 5G38A 1Q9FA 1QJ8A 5PRNA 5EE2A 2J4UP 4G75A 1BXWA 4E1SA 4O3XB 8PRNA 2K0LA 2FGQX 3QRCA 3K19A 5E79O 4O3YA 1GFOA 2LFUA 4O3WA 3SYSA 3V8UA 4FOZA 2XTQA 3AA6A 4UB6O 1PHOA 3GP6A 1GFQA 4N74A 3A0BO 4B61A 4RLCA 5ADXL 1OSMA 3PRNA 4N58A 4FRTA 2W80C 3SY7A 2WVPA 3PQUA 4RJXA 4RLBA 4JCHA 3A2SX 3BS0A 4GHBA 2IWWA 4FSPA 3POXA 1P4TA 3C5OA 3PQSA 2KXPA 5ADXK 1HXUA 3PF1A 2XE1A 2R88A 4XNKA 5B5EO 2N2LA 1Q9GA 3HW9A 2MHLA 4FZLA 3A0HO 2YPVA 3KZIO 4FZNA 4KR8A 4O49A 4UB8O 5DL5A 1ZHYA 5G3AA 5GTIO 4QQ1A 4AKMA 4AKRB 1T1LA 1IZNB 2PRNA 1QJPA 3NSGA 2XE3A 2Y0LA 5G39A 3VZTX 1T16A 2KDYA 3AA0A 3VY9X 4FT6A 2K4TA 3AAEB 3TZGA 4AFKA 2Y0KA 2GE4A 4AYNA 3AA7A 4GCSA 1ORMA 1PRNA 3UPGA 2ZLDA 4LSIA 4O4XA 5TISO 5GTHO 4O4UA 1GFMA 2XE2A 2R89A 3AA7B 3NJTA 4FSOA 5H2FO 2KXPB 3DA4A 4XNLA 3WI5A 4AYMC 2F1TA 2JQYA 1HXTA 3VZWX 4AYEC 2ZFGA 4AYDC 3T20A 3SZDA 1IZNA 3VE2A 3EMNX 1ZHXA 2N2MA 1OPFA 1ZHWA 3G7GA 1ZHZA 2KZ7A 3JTYA 4K3CA 3AA0B 3SZVA 3UAQA 2R4PA 1HXXA 3SY9A 3T24A 7PRNA 3AAEA 2XG6A 4FESA 4RL9A 4BUMX 2R4OA 4RJWA 2Y7SA 1G90A 5AFUL 1BT9A 4JFBA 4LSEA 2F1CX 3UU2A 4Z3TA 3WU2O 1MM5A 2W81C 4D5UA 1S5LO 2KC0A 3AA1B 4CTDA 4KR4A 1QJ9A 2LHFA 3FYXA 1E54A 4KRAA 5G26A 3O0EA 3VY8X 2WJQA 3VZUX 2QTKA 3DZMA 2JMMA 2Y2XA 2ODJA 3DWOX 2Y0HA 3LK2B 2IWVA 4IL6O 4C69X 4D64A 4GF4A 3PGRA 3LK41 4GCQA 3AAAA 5DL8A 3LK2A 5IYUA 5DL7A 3WI4A 2PORA 5JDPA 1BH3A 2F1VA 3AA6B 3LK3A 2ERVA 3T0SA 4C4VB 4N59A 5GV0A 5AFUK 1GFNA 2YNKA
chains in the Genus database with same CATH topology
1MPFA 4F4BA 4LSFA 3PORA 2XE5A 3QRAA 4FMSA 4E1TA 2X27X 3AA1A 2M06A 2MNHA 1ZHTA 3POUA 1YS5A 2KZ7B 4AUIA 1GFPA 4AKRA 3HWBA 4LSHA 3RBHA 4D65A 2FGRA 4O3ZA 4FZMA 3AAAB 5T5FA 3SYBA 4G76A 4U9CA 3HOEA 2XMXA 3LK3B 4FRXA 3KVDD 5DL6A 1MM4A 3DA3A 6PRNA 4PUXA 4GCPA 3LK42 5FVNA 5D5DA 2OMFA 1THQA 2M07A 1H6S1 4AYID 2XTRA 2J1NA 2O4VA 3HOLA 4AZLA 3POQA 4FUVA 3VE1A 1Q9FA 1QJ8A 5PRNA 5EE2A 2J4UP 4G75A 1BXWA 4E1SA 4O3XB 8PRNA 2K0LA 2FGQX 3QRCA 3K19A 4O3YA 1GFOA 2LFUA 4O3WA 3SYSA 3V8UA 4FOZA 2XTQA 3AA6A 1PHOA 3GP6A 1GFQA 4B61A 4RLCA 5ADXL 1OSMA 3PRNA 4N58A 4FRTA 2W80C 3SY7A 4RLBA 3PQUA 4RJXA 4JCHA 3A2SX 4GHBA 4FSPA 3POXA 1P4TA 3C5OA 3PQSA 2KXPA 5ADXK 1HXUA 2XE1A 4XNKA 2N2LA 1Q9GA 3HW9A 2MHLA 4FZLA 4KR8A 2YPVA 4FZNA 4O49A 5DL5A 4AKMA 1ZHYA 4QQ1A 4AKRB 1IZNB 2PRNA 1QJPA 3NSGA 2XE3A 2Y0LA 3VZTX 2KDYA 3AA0A 3VY9X 4FT6A 2K4TA 3AAEB 3TZGA 4AFKA 2Y0KA 2GE4A 4AYNA 3AA7A 4GCSA 1ORMA 1PRNA 3UPGA 2ZLDA 4LSIA 4O4XA 4O4UA 1GFMA 2XE2A 3AA7B 4FSOA 2KXPB 3DA4A 4XNLA 3WI5A 4AYMC 2F1TA 1HXTA 3VZWX 4AYEC 2ZFGA 4AYDC 3T20A 3SZDA 1IZNA 3VE2A 3EMNX 1ZHXA 2N2MA 1OPFA 1ZHWA 3G7GA 1ZHZA 2KZ7A 3JTYA 3SZVA 3AA0B 3UAQA 1HXXA 3SY9A 7PRNA 3T24A 3AAEA 2XG6A 4FESA 4RL9A 4BUMX 4RJWA 2Y7SA 1G90A 5AFUL 1BT9A 4JFBA 4LSEA 3UU2A 4Z3TA 1MM5A 2W81C 4D5UA 3AA1B 2KC0A 4KR4A 1QJ9A 2LHFA 3FYXA 1E54A 4KRAA 5G26A 3O0EA 3VY8X 3VZUX 2QTKA 3LK2B 2JMMA 2Y2XA 2ODJA 4C69X 2Y0HA 4D64A 4GF4A 3LK41 4GCQA 3AAAA 5DL8A 3LK2A 5IYUA 5DL7A 3WI4A 2PORA 5JDPA 1BH3A 2F1VA 3AA6B 3LK3A 2ERVA 3T0SA 4N59A 5GV0A 5AFUK 1GFNA 2YNKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TZG A; 
#chains in the Genus database with same CATH topology
 1MPF A;  2R4N A;  5B66 O;  5KAF O;  4C4V A;  4F4B A;  4LSF A;  4PJ0 O;  3POR A;  2XE5 A;  3QRA A;  4FMS A;  4E1T A;  2X27 X;  3AA1 A;  2M06 A;  2MNH A;  1ZHT A;  2AXT O;  1YS5 A;  3POU A;  2KZ7 B;  3JCU O;  1GFP A;  4AUI A;  4AKR A;  3PGS A;  3HWB A;  2WJR A;  5KAI O;  4LSH A;  3RBH A;  4D65 A;  3BRY A;  2FGR A;  4FQE A;  4O3Z A;  2R4L A;  2X9K A;  4FZM A;  3AAA B;  3DWN A;  5T5F A;  3SYB A;  4G76 A;  3BRZ A;  4U9C A;  4N75 A;  3HOE A;  4C00 A;  2XMX A;  3LK3 B;  4FRX A;  3KVD D;  4PR7 A;  5DL6 A;  1MM4 A;  3DA3 A;  6PRN A;  4PUX A;  4GCP A;  3LK4 2;  5FVN A;  5D5D A;  2OMF A;  1THQ A;  2M07 A;  1H6S 1;  4K3B A;  4AYI D;  3PGU A;  2O4V A;  2R8A A;  2J1N A;  2XTR A;  3HOL A;  4AZL A;  3POQ A;  4FUV A;  3VE1 A;  5G38 A;  1Q9F A;  1QJ8 A;  5PRN A;  5EE2 A;  2J4U P;  4G75 A;  1BXW A;  4E1S A;  4O3X B;  8PRN A;  2K0L A;  2FGQ X;  3QRC A;  3K19 A;  5E79 O;  4O3Y A;  1GFO A;  2LFU A;  4O3W A;  3SYS A;  3V8U A;  4FOZ A;  2XTQ A;  3AA6 A;  4UB6 O;  1PHO A;  3GP6 A;  1GFQ A;  4N74 A;  3A0B O;  4B61 A;  4RLC A;  5ADX L;  1OSM A;  3PRN A;  4N58 A;  4FRT A;  2W80 C;  3SY7 A;  2WVP A;  3PQU A;  4RJX A;  4RLB A;  4JCH A;  3A2S X;  3BS0 A;  4GHB A;  2IWW A;  4FSP A;  3POX A;  1P4T A;  3C5O A;  3PQS A;  2KXP A;  5ADX K;  1HXU A;  3PF1 A;  2XE1 A;  2R88 A;  4XNK A;  5B5E O;  2N2L A;  1Q9G A;  3HW9 A;  2MHL A;  4FZL A;  3A0H O;  2YPV A;  3KZI O;  4FZN A;  4KR8 A;  4O49 A;  4UB8 O;  5DL5 A;  1ZHY A;  5G3A A;  5GTI O;  4QQ1 A;  4AKM A;  4AKR B;  1T1L A;  1IZN B;  2PRN A;  1QJP A;  3NSG A;  2XE3 A;  2Y0L A;  5G39 A;  3VZT X;  1T16 A;  2KDY A;  3AA0 A;  3VY9 X;  4FT6 A;  2K4T A;  3AAE B;  3TZG A;  4AFK A;  2Y0K A;  2GE4 A;  4AYN A;  3AA7 A;  4GCS A;  1ORM A;  1PRN A;  3UPG A;  2ZLD A;  4LSI A;  4O4X A;  5TIS O;  5GTH O;  4O4U A;  1GFM A;  2XE2 A;  2R89 A;  3AA7 B;  3NJT A;  4FSO A;  5H2F O;  2KXP B;  3DA4 A;  4XNL A;  3WI5 A;  4AYM C;  2F1T A;  2JQY A;  1HXT A;  3VZW X;  4AYE C;  2ZFG A;  4AYD C;  3T20 A;  3SZD A;  1IZN A;  3VE2 A;  3EMN X;  1ZHX A;  2N2M A;  1OPF A;  1ZHW A;  3G7G A;  1ZHZ A;  2KZ7 A;  3JTY A;  4K3C A;  3AA0 B;  3SZV A;  3UAQ A;  2R4P A;  1HXX A;  3SY9 A;  3T24 A;  7PRN A;  3AAE A;  2XG6 A;  4FES A;  4RL9 A;  4BUM X;  2R4O A;  4RJW A;  2Y7S A;  1G90 A;  5AFU L;  1BT9 A;  4JFB A;  4LSE A;  2F1C X;  3UU2 A;  4Z3T A;  3WU2 O;  1MM5 A;  2W81 C;  4D5U A;  1S5L O;  2KC0 A;  3AA1 B;  4CTD A;  4KR4 A;  1QJ9 A;  2LHF A;  3FYX A;  1E54 A;  4KRA A;  5G26 A;  3O0E A;  3VY8 X;  2WJQ A;  3VZU X;  2QTK A;  3DZM A;  2JMM A;  2Y2X A;  2ODJ A;  3DWO X;  2Y0H A;  3LK2 B;  2IWV A;  4IL6 O;  4C69 X;  4D64 A;  4GF4 A;  3PGR A;  3LK4 1;  4GCQ A;  3AAA A;  5DL8 A;  3LK2 A;  5IYU A;  5DL7 A;  3WI4 A;  2POR A;  5JDP A;  1BH3 A;  2F1V A;  3AA6 B;  3LK3 A;  2ERV A;  3T0S A;  4C4V B;  4N59 A;  5GV0 A;  5AFU K;  1GFN A;  2YNK A; 
#chains in the Genus database with same CATH homology
 1MPF A;  4F4B A;  4LSF A;  3POR A;  2XE5 A;  3QRA A;  4FMS A;  4E1T A;  2X27 X;  3AA1 A;  2M06 A;  2MNH A;  1ZHT A;  3POU A;  1YS5 A;  2KZ7 B;  4AUI A;  1GFP A;  4AKR A;  3HWB A;  4LSH A;  3RBH A;  4D65 A;  2FGR A;  4O3Z A;  4FZM A;  3AAA B;  5T5F A;  3SYB A;  4G76 A;  4U9C A;  3HOE A;  2XMX A;  3LK3 B;  4FRX A;  3KVD D;  5DL6 A;  1MM4 A;  3DA3 A;  6PRN A;  4PUX A;  4GCP A;  3LK4 2;  5FVN A;  5D5D A;  2OMF A;  1THQ A;  2M07 A;  1H6S 1;  4AYI D;  2XTR A;  2J1N A;  2O4V A;  3HOL A;  4AZL A;  3POQ A;  4FUV A;  3VE1 A;  1Q9F A;  1QJ8 A;  5PRN A;  5EE2 A;  2J4U P;  4G75 A;  1BXW A;  4E1S A;  4O3X B;  8PRN A;  2K0L A;  2FGQ X;  3QRC A;  3K19 A;  4O3Y A;  1GFO A;  2LFU A;  4O3W A;  3SYS A;  3V8U A;  4FOZ A;  2XTQ A;  3AA6 A;  1PHO A;  3GP6 A;  1GFQ A;  4B61 A;  4RLC A;  5ADX L;  1OSM A;  3PRN A;  4N58 A;  4FRT A;  2W80 C;  3SY7 A;  4RLB A;  3PQU A;  4RJX A;  4JCH A;  3A2S X;  4GHB A;  4FSP A;  3POX A;  1P4T A;  3C5O A;  3PQS A;  2KXP A;  5ADX K;  1HXU A;  2XE1 A;  4XNK A;  2N2L A;  1Q9G A;  3HW9 A;  2MHL A;  4FZL A;  4KR8 A;  2YPV A;  4FZN A;  4O49 A;  5DL5 A;  4AKM A;  1ZHY A;  4QQ1 A;  4AKR B;  1IZN B;  2PRN A;  1QJP A;  3NSG A;  2XE3 A;  2Y0L A;  3VZT X;  2KDY A;  3AA0 A;  3VY9 X;  4FT6 A;  2K4T A;  3AAE B;  3TZG A;  4AFK A;  2Y0K A;  2GE4 A;  4AYN A;  3AA7 A;  4GCS A;  1ORM A;  1PRN A;  3UPG A;  2ZLD A;  4LSI A;  4O4X A;  4O4U A;  1GFM A;  2XE2 A;  3AA7 B;  4FSO A;  2KXP B;  3DA4 A;  4XNL A;  3WI5 A;  4AYM C;  2F1T A;  1HXT A;  3VZW X;  4AYE C;  2ZFG A;  4AYD C;  3T20 A;  3SZD A;  1IZN A;  3VE2 A;  3EMN X;  1ZHX A;  2N2M A;  1OPF A;  1ZHW A;  3G7G A;  1ZHZ A;  2KZ7 A;  3JTY A;  3SZV A;  3AA0 B;  3UAQ A;  1HXX A;  3SY9 A;  7PRN A;  3T24 A;  3AAE A;  2XG6 A;  4FES A;  4RL9 A;  4BUM X;  4RJW A;  2Y7S A;  1G90 A;  5AFU L;  1BT9 A;  4JFB A;  4LSE A;  3UU2 A;  4Z3T A;  1MM5 A;  2W81 C;  4D5U A;  3AA1 B;  2KC0 A;  4KR4 A;  1QJ9 A;  2LHF A;  3FYX A;  1E54 A;  4KRA A;  5G26 A;  3O0E A;  3VY8 X;  3VZU X;  2QTK A;  3LK2 B;  2JMM A;  2Y2X A;  2ODJ A;  4C69 X;  2Y0H A;  4D64 A;  4GF4 A;  3LK4 1;  4GCQ A;  3AAA A;  5DL8 A;  3LK2 A;  5IYU A;  5DL7 A;  3WI4 A;  2POR A;  5JDP A;  1BH3 A;  2F1V A;  3AA6 B;  3LK3 A;  2ERV A;  3T0S A;  4N59 A;  5GV0 A;  5AFU K;  1GFN A;  2YNK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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