3TZGA

Crystal structure of a porin-like protein (bvu_2266) from bacteroides vulgatus atcc 8482 at 2.80 a resolution
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
245
structure length
239
Chain Sequence
DTYVTKVTDLTGEEEQVLKLEYDRDGKIIKYGDTPVRYEGDQITIGQMNKLCNVTFQIGKGKARESRARCMLKVGEEVYEADKQTVYDYKGDTIFINSDYRATSDYRFLKKVQGKYVFDQLGRLKEVMTVFTEANDSVSSCHTYYNYDNNINYQANLNLQAYVIDYDGVDSFFYFLLNLGQLRNRTALPNDIGYCMNHGLSTYNVHANYRLDDENPVRIEVLYNYTKLLSRIDLSYNPL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural genomics, unknown function
source organism Bacteroides vulgatus
publication title Crystal structure of a hypothetical protein BVU_2266 (BVU_2266) from Bacteroides vulgatus ATCC 8482 at 2.80 A resolution
rcsb
molecule keywords hypothetical protein BVU_2266
total genus 54
structure length 239
sequence length 245
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-09-27
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.150 Mainly Beta Beta Barrel Porin Porin 3tzgA00
3TZGA
chains in the Genus database with same CATH superfamily
2AXTO 4G75A 5GTHO 2FGRA 3AA7A 2GE4A 5EE2A 3A0BO 3VZTX 2OMFA 2JQYA 2IWWA 2W80C 3KVDD 2WJQA 1GFQA 4FZNA 3HWBA 3SY9A 2XTRA 4RJXA 2XE5A 1T1LA 4N59A 1BXWA 1THQA 3PGUA 2M06A 5JDPA 4XNKA 3DWNA 2W81C 3JTYA 2PRNA 3AA0A 3JCUO 3K19A 4QQ1A 4RLCA 2KZ7A 3QRAA 4FRXA 5G3AA 2Y0LA 1ZHZA 4KR8A 3TZGA 1BH3A 4AKMA 3VY9X 2YPVA 3T0SA 6PRNA 2KXPA 1QJ9A 3AAEA 3DWOX 3SYBA 4AZLA 4UB6O 3LK3B 4O49A 3GP6A 2F1TA 2R4PA 4GCQA 5T5FA 4D5UA 2Y2XA 5FVNA 3UU2A 5G38A 4FZMA 1GFNA 3DZMA 1ORMA 2K4TA 2N2MA 1IZNA 3DA4A 5DL8A 5DL6A 3AA0B 4FOZA 2XG6A 4KRAA 3V8UA 1MM5A 4PR7A 1ZHXA 2K0LA 3T24A 3O0EA 1BT9A 2KXPB 2XE3A 3AAEB 3AAAA 3LK2A 1T16A 1HXTA 4RLBA 5H2FO 3T20A 3PRNA 4IL6O 5D5DA 4G76A 5KAFO 3QRCA 4D65A 8PRNA 1HXUA 3AA6A 5KAIO 4O3XB 4U9CA 3WI4A 7PRNA 3VY8X 1OPFA 2Y0HA 3C5OA 3PGRA 3PORA 2JMMA 4FSPA 3RBHA 4AYMC 5AFUL 3PF1A 2MHLA 2KC0A 2X9KA 2F1CX 2XE1A 3KZIO 4GF4A 4K3BA 4N75A 4UB8O 2YNKA 3PGSA 3SZVA 4CTDA 4RL9A 3AA7B 3POQA 5E79O 4GHBA 4O4UA 4AUIA 5IYUA 2R89A 2LFUA 4O3YA 1Q9GA 1YS5A 4PUXA 4Z3TA 4PJ0O 5ADXK 2J1NA 3LK2B 3AAAB 2X27X 3PQSA 3HOLA 3HW9A 3NSGA 4GCSA 3DA3A 5B5EO 3AA6B 4E1TA 4C69X 3AA1A 4O3WA 2ZFGA 5G26A 2KZ7B 4AYID 3POXA 1E54A 2Y7SA 1GFMA 4N74A 3VZWX 3SY7A 2ODJA 2O4VA 2PORA 4XNLA 3WI5A 3UAQA 4KR4A 2WVPA 5GTIO 3FYXA 4AKRA 2R8AA 3VZUX 2XTQA 4GCPA 3EMNX 4RJWA 5GV0A 3A0HO 4LSIA 4K3CA 2ZLDA 3NJTA 1IZNB 4O3ZA 4AYEC 1P4TA 3AA1B 3A2SX 4AFKA 2IWVA 5B66O 2FGQX 4FUVA 1PHOA 1QJPA 2LHFA 4LSFA 2R4LA 1QJ8A 4JFBA 5TISO 2XE2A 3PQUA 3SZDA 4D64A 4E1SA 1S5LO 1MPFA 3UPGA 3LK42 2QTKA 5G39A 4FESA 4AKRB 2WJRA 4FZLA 3LK3A 3WU2O 4C4VA 2KDYA 3BS0A 4B61A 2R4OA 1GFPA 2N2LA 5DL5A 2R4NA 1Q9FA 3BRZA 3HOEA 4LSEA 1GFOA 2M07A 4N58A 4AYNA 4LSHA 4BUMX 3POUA 3LK41 4FMSA 3VE2A 1ZHTA 4O4XA 3G7GA 2R88A 4FRTA 4FT6A 1PRNA 4F4BA 5AFUK 1MM4A 3BRYA 2XMXA 4FSOA 2F1VA 1G90A 5DL7A 4FQEA 1OSMA 2J4UP 1HXXA 5PRNA 4C4VB 2ERVA 1ZHWA 4C00A 3VE1A 1H6S1 1ZHYA 4AYDC 2Y0KA 2MNHA 3SYSA 5ADXL 4JCHA
chains in the Genus database with same CATH topology
4G75A 2FGRA 3AA7A 2GE4A 5EE2A 3VZTX 2OMFA 2W80C 3KVDD 1GFQA 4FZNA 3HWBA 3SY9A 2XTRA 4RJXA 2XE5A 4N59A 1BXWA 1THQA 2M06A 5JDPA 4XNKA 2W81C 3JTYA 2PRNA 3AA0A 3K19A 4QQ1A 4RLCA 2KZ7A 3QRAA 4FRXA 3TZGA 2Y0LA 1ZHZA 4KR8A 4AKMA 1BH3A 3VY9X 2YPVA 3T0SA 6PRNA 2KXPA 1QJ9A 3AAEA 4AZLA 3SYBA 3LK3B 4O49A 3GP6A 2F1TA 4GCQA 5T5FA 4D5UA 2Y2XA 5FVNA 3UU2A 4FZMA 1GFNA 1ORMA 2K4TA 2N2MA 1IZNA 3DA4A 5DL8A 5DL6A 3AA0B 4FOZA 2XG6A 4KRAA 3V8UA 1MM5A 1ZHXA 2K0LA 3T24A 3O0EA 1BT9A 2KXPB 2XE3A 3AAEB 3AAAA 3LK2A 4RLBA 1HXTA 3T20A 3PRNA 4D65A 5D5DA 4G76A 3QRCA 8PRNA 1HXUA 3AA6A 3WI4A 4O3XB 4U9CA 7PRNA 3VY8X 1OPFA 2Y0HA 3C5OA 3PORA 3RBHA 2JMMA 4FSPA 4AYMC 5AFUL 2MHLA 2KC0A 4GF4A 2XE1A 3SZVA 2YNKA 4RL9A 3AA7B 3POQA 4GHBA 4O4UA 4AUIA 5IYUA 2LFUA 4O3YA 1Q9GA 1YS5A 4PUXA 4Z3TA 5ADXK 2J1NA 3LK2B 3AAAB 2X27X 3PQSA 3HOLA 3HW9A 3NSGA 4GCSA 3DA3A 3AA6B 4E1TA 4C69X 3AA1A 4O3WA 2ZFGA 5G26A 2KZ7B 4AYID 3POXA 1E54A 2Y7SA 1GFMA 3VZWX 3SY7A 2ODJA 2O4VA 2PORA 4XNLA 3WI5A 3UAQA 4KR4A 4AKRA 3FYXA 3VZUX 2XTQA 4GCPA 3EMNX 4RJWA 5GV0A 4LSIA 2ZLDA 4AYEC 1IZNB 4O3ZA 1P4TA 3AA1B 3A2SX 4AFKA 2FGQX 4FUVA 1PHOA 1QJPA 2LHFA 4LSFA 1QJ8A 4JFBA 2XE2A 3PQUA 3SZDA 4D64A 4E1SA 1MPFA 3UPGA 3LK42 2QTKA 4FESA 4AKRB 4FZLA 3LK3A 2KDYA 4B61A 1GFPA 2N2LA 5DL5A 3HOEA 1Q9FA 4LSEA 4N58A 4AYNA 1GFOA 2M07A 4BUMX 4LSHA 3POUA 3LK41 4FMSA 3VE2A 1ZHTA 4O4XA 3G7GA 4FRTA 4FT6A 1PRNA 4F4BA 5AFUK 1MM4A 2XMXA 4FSOA 2F1VA 1G90A 5DL7A 1OSMA 2J4UP 1HXXA 5PRNA 2ERVA 1ZHWA 3VE1A 1H6S1 1ZHYA 4AYDC 2Y0KA 2MNHA 3SYSA 5ADXL 4JCHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3TZG A; 
#chains in the Genus database with same CATH topology
 2AXT O;  4G75 A;  5GTH O;  2FGR A;  3AA7 A;  2GE4 A;  5EE2 A;  3A0B O;  3VZT X;  2OMF A;  2JQY A;  2IWW A;  2W80 C;  3KVD D;  2WJQ A;  1GFQ A;  4FZN A;  3HWB A;  3SY9 A;  2XTR A;  4RJX A;  2XE5 A;  1T1L A;  4N59 A;  1BXW A;  1THQ A;  3PGU A;  2M06 A;  5JDP A;  4XNK A;  3DWN A;  2W81 C;  3JTY A;  2PRN A;  3AA0 A;  3JCU O;  3K19 A;  4QQ1 A;  4RLC A;  2KZ7 A;  3QRA A;  4FRX A;  5G3A A;  2Y0L A;  1ZHZ A;  4KR8 A;  3TZG A;  1BH3 A;  4AKM A;  3VY9 X;  2YPV A;  3T0S A;  6PRN A;  2KXP A;  1QJ9 A;  3AAE A;  3DWO X;  3SYB A;  4AZL A;  4UB6 O;  3LK3 B;  4O49 A;  3GP6 A;  2F1T A;  2R4P A;  4GCQ A;  5T5F A;  4D5U A;  2Y2X A;  5FVN A;  3UU2 A;  5G38 A;  4FZM A;  1GFN A;  3DZM A;  1ORM A;  2K4T A;  2N2M A;  1IZN A;  3DA4 A;  5DL8 A;  5DL6 A;  3AA0 B;  4FOZ A;  2XG6 A;  4KRA A;  3V8U A;  1MM5 A;  4PR7 A;  1ZHX A;  2K0L A;  3T24 A;  3O0E A;  1BT9 A;  2KXP B;  2XE3 A;  3AAE B;  3AAA A;  3LK2 A;  1T16 A;  1HXT A;  4RLB A;  5H2F O;  3T20 A;  3PRN A;  4IL6 O;  5D5D A;  4G76 A;  5KAF O;  3QRC A;  4D65 A;  8PRN A;  1HXU A;  3AA6 A;  5KAI O;  4O3X B;  4U9C A;  3WI4 A;  7PRN A;  3VY8 X;  1OPF A;  2Y0H A;  3C5O A;  3PGR A;  3POR A;  2JMM A;  4FSP A;  3RBH A;  4AYM C;  5AFU L;  3PF1 A;  2MHL A;  2KC0 A;  2X9K A;  2F1C X;  2XE1 A;  3KZI O;  4GF4 A;  4K3B A;  4N75 A;  4UB8 O;  2YNK A;  3PGS A;  3SZV A;  4CTD A;  4RL9 A;  3AA7 B;  3POQ A;  5E79 O;  4GHB A;  4O4U A;  4AUI A;  5IYU A;  2R89 A;  2LFU A;  4O3Y A;  1Q9G A;  1YS5 A;  4PUX A;  4Z3T A;  4PJ0 O;  5ADX K;  2J1N A;  3LK2 B;  3AAA B;  2X27 X;  3PQS A;  3HOL A;  3HW9 A;  3NSG A;  4GCS A;  3DA3 A;  5B5E O;  3AA6 B;  4E1T A;  4C69 X;  3AA1 A;  4O3W A;  2ZFG A;  5G26 A;  2KZ7 B;  4AYI D;  3POX A;  1E54 A;  2Y7S A;  1GFM A;  4N74 A;  3VZW X;  3SY7 A;  2ODJ A;  2O4V A;  2POR A;  4XNL A;  3WI5 A;  3UAQ A;  4KR4 A;  2WVP A;  5GTI O;  3FYX A;  4AKR A;  2R8A A;  3VZU X;  2XTQ A;  4GCP A;  3EMN X;  4RJW A;  5GV0 A;  3A0H O;  4LSI A;  4K3C A;  2ZLD A;  3NJT A;  1IZN B;  4O3Z A;  4AYE C;  1P4T A;  3AA1 B;  3A2S X;  4AFK A;  2IWV A;  5B66 O;  2FGQ X;  4FUV A;  1PHO A;  1QJP A;  2LHF A;  4LSF A;  2R4L A;  1QJ8 A;  4JFB A;  5TIS O;  2XE2 A;  3PQU A;  3SZD A;  4D64 A;  4E1S A;  1S5L O;  1MPF A;  3UPG A;  3LK4 2;  2QTK A;  5G39 A;  4FES A;  4AKR B;  2WJR A;  4FZL A;  3LK3 A;  3WU2 O;  4C4V A;  2KDY A;  3BS0 A;  4B61 A;  2R4O A;  1GFP A;  2N2L A;  5DL5 A;  2R4N A;  1Q9F A;  3BRZ A;  3HOE A;  4LSE A;  1GFO A;  2M07 A;  4N58 A;  4AYN A;  4LSH A;  4BUM X;  3POU A;  3LK4 1;  4FMS A;  3VE2 A;  1ZHT A;  4O4X A;  3G7G A;  2R88 A;  4FRT A;  4FT6 A;  1PRN A;  4F4B A;  5AFU K;  1MM4 A;  3BRY A;  2XMX A;  4FSO A;  2F1V A;  1G90 A;  5DL7 A;  4FQE A;  1OSM A;  2J4U P;  1HXX A;  5PRN A;  4C4V B;  2ERV A;  1ZHW A;  4C00 A;  3VE1 A;  1H6S 1;  1ZHY A;  4AYD C;  2Y0K A;  2MNH A;  3SYS A;  5ADX L;  4JCH A; 
#chains in the Genus database with same CATH homology
 4G75 A;  2FGR A;  3AA7 A;  2GE4 A;  5EE2 A;  3VZT X;  2OMF A;  2W80 C;  3KVD D;  1GFQ A;  4FZN A;  3HWB A;  3SY9 A;  2XTR A;  4RJX A;  2XE5 A;  4N59 A;  1BXW A;  1THQ A;  2M06 A;  5JDP A;  4XNK A;  2W81 C;  3JTY A;  2PRN A;  3AA0 A;  3K19 A;  4QQ1 A;  4RLC A;  2KZ7 A;  3QRA A;  4FRX A;  3TZG A;  2Y0L A;  1ZHZ A;  4KR8 A;  4AKM A;  1BH3 A;  3VY9 X;  2YPV A;  3T0S A;  6PRN A;  2KXP A;  1QJ9 A;  3AAE A;  4AZL A;  3SYB A;  3LK3 B;  4O49 A;  3GP6 A;  2F1T A;  4GCQ A;  5T5F A;  4D5U A;  2Y2X A;  5FVN A;  3UU2 A;  4FZM A;  1GFN A;  1ORM A;  2K4T A;  2N2M A;  1IZN A;  3DA4 A;  5DL8 A;  5DL6 A;  3AA0 B;  4FOZ A;  2XG6 A;  4KRA A;  3V8U A;  1MM5 A;  1ZHX A;  2K0L A;  3T24 A;  3O0E A;  1BT9 A;  2KXP B;  2XE3 A;  3AAE B;  3AAA A;  3LK2 A;  4RLB A;  1HXT A;  3T20 A;  3PRN A;  4D65 A;  5D5D A;  4G76 A;  3QRC A;  8PRN A;  1HXU A;  3AA6 A;  3WI4 A;  4O3X B;  4U9C A;  7PRN A;  3VY8 X;  1OPF A;  2Y0H A;  3C5O A;  3POR A;  3RBH A;  2JMM A;  4FSP A;  4AYM C;  5AFU L;  2MHL A;  2KC0 A;  4GF4 A;  2XE1 A;  3SZV A;  2YNK A;  4RL9 A;  3AA7 B;  3POQ A;  4GHB A;  4O4U A;  4AUI A;  5IYU A;  2LFU A;  4O3Y A;  1Q9G A;  1YS5 A;  4PUX A;  4Z3T A;  5ADX K;  2J1N A;  3LK2 B;  3AAA B;  2X27 X;  3PQS A;  3HOL A;  3HW9 A;  3NSG A;  4GCS A;  3DA3 A;  3AA6 B;  4E1T A;  4C69 X;  3AA1 A;  4O3W A;  2ZFG A;  5G26 A;  2KZ7 B;  4AYI D;  3POX A;  1E54 A;  2Y7S A;  1GFM A;  3VZW X;  3SY7 A;  2ODJ A;  2O4V A;  2POR A;  4XNL A;  3WI5 A;  3UAQ A;  4KR4 A;  4AKR A;  3FYX A;  3VZU X;  2XTQ A;  4GCP A;  3EMN X;  4RJW A;  5GV0 A;  4LSI A;  2ZLD A;  4AYE C;  1IZN B;  4O3Z A;  1P4T A;  3AA1 B;  3A2S X;  4AFK A;  2FGQ X;  4FUV A;  1PHO A;  1QJP A;  2LHF A;  4LSF A;  1QJ8 A;  4JFB A;  2XE2 A;  3PQU A;  3SZD A;  4D64 A;  4E1S A;  1MPF A;  3UPG A;  3LK4 2;  2QTK A;  4FES A;  4AKR B;  4FZL A;  3LK3 A;  2KDY A;  4B61 A;  1GFP A;  2N2L A;  5DL5 A;  3HOE A;  1Q9F A;  4LSE A;  4N58 A;  4AYN A;  1GFO A;  2M07 A;  4BUM X;  4LSH A;  3POU A;  3LK4 1;  4FMS A;  3VE2 A;  1ZHT A;  4O4X A;  3G7G A;  4FRT A;  4FT6 A;  1PRN A;  4F4B A;  5AFU K;  1MM4 A;  2XMX A;  4FSO A;  2F1V A;  1G90 A;  5DL7 A;  1OSM A;  2J4U P;  1HXX A;  5PRN A;  2ERV A;  1ZHW A;  3VE1 A;  1H6S 1;  1ZHY A;  4AYD C;  2Y0K A;  2MNH A;  3SYS A;  5ADX L;  4JCH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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