3U1UA

Crystal structure of rna polymerase-associated protein rtf1 homolog plus-3 domain
Total Genus 37
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
37
sequence length
135
structure length
131
Chain Sequence
PKSQPVSLPEELNRVRLSRHKLERWCHMPFFAKTVTGCFVRIGIGNPVYRVAEITGVVETAKVYQLGGTRTNKGLQLRHGNDQRVFRLEFVSNQEFTESEFMKWKEAMFSAGMQLPTLDEINKKELSIKEA
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule keywords RNA polymerase-associated protein RTF1 homolog
publication title Crystal structure of RNA polymerase-associated protein RTF1 homolog Plus-3 domain
rcsb
source organism Homo sapiens
molecule tags Transcription
total genus 37
structure length 131
sequence length 135
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03126 Plus-3 Plus-3 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.170.260.30 Mainly Beta Beta Complex paz domain paz domain 3u1uA01
2DB9A 4L1UA 4L1PA 3U1UA 2BZEA
chains in the Genus database with same CATH superfamily
4NGGA 3HJFA 4F3TA 3U1UA 4OLAA 4NGBA 4NH3A 3O6EX 1T2RA 4Z4IA 1R6ZA 4NGFA 4Z4EA 4KRFA 3HO1A 3O7VX 3F73A 5JS2A 1Z25A 4Z4FA 5JS1A 3HK2A 4W5TA 1T2SA 3O7XA 5KI6A 3HVRA 3MJ0A 2FFLA 4Z4HA 1Z26A 4W5QA 4OLBA 3DA5A 2DB9A 4L1UA 1SI2A 1U04A 2XFMA 4NGCA 5T7BA 2QVWA 3HM9A 3DLBA 3O3IX 1R4KA 2L5CA 4W5OA 2L5DA 2BZEA 4NGDA 4KREA 4W5NA 1VYNA 3QIRA 4W5RA 4NH5A 4L1PA 1SI3A 4NHAA 4NH6A 3DLHA 4Z4CA 4Z4GA
chains in the Genus database with same CATH topology
4NGGA 3HJFA 4F3TA 3U1UA 4OLAA 4NGBA 4NH3A 3O6EX 1T2RA 4Z4IA 1R6ZA 4NGFA 4Z4EA 4KRFA 3HO1A 3O7VX 3F73A 5JS2A 1Z25A 4Z4FA 5JS1A 3HK2A 4W5TA 1T2SA 3O7XA 5KI6A 3HVRA 3MJ0A 2FFLA 4Z4HA 1Z26A 4W5QA 4OLBA 3DA5A 2DB9A 4L1UA 1SI2A 1U04A 2XFMA 4NGCA 5T7BA 2QVWA 3HM9A 3DLBA 3O3IX 1R4KA 2L5CA 4W5OA 2L5DA 2BZEA 4NGDA 4KREA 4W5NA 1VYNA 3QIRA 4W5RA 4NH5A 4L1PA 1SI3A 4NHAA 4NH6A 3DLHA 4Z4CA 4Z4GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2DB9 A;  4L1U A;  4L1P A;  3U1U A;  2BZE A; 
#chains in the Genus database with same CATH topology
 4NGG A;  3HJF A;  4F3T A;  3U1U A;  4OLA A;  4NGB A;  4NH3 A;  3O6E X;  1T2R A;  4Z4I A;  1R6Z A;  4NGF A;  4Z4E A;  4KRF A;  3HO1 A;  3O7V X;  3F73 A;  5JS2 A;  1Z25 A;  4Z4F A;  5JS1 A;  3HK2 A;  4W5T A;  1T2S A;  3O7X A;  5KI6 A;  3HVR A;  3MJ0 A;  2FFL A;  4Z4H A;  1Z26 A;  4W5Q A;  4OLB A;  3DA5 A;  2DB9 A;  4L1U A;  1SI2 A;  1U04 A;  2XFM A;  4NGC A;  5T7B A;  2QVW A;  3HM9 A;  3DLB A;  3O3I X;  1R4K A;  2L5C A;  4W5O A;  2L5D A;  2BZE A;  4NGD A;  4KRE A;  4W5N A;  1VYN A;  3QIR A;  4W5R A;  4NH5 A;  4L1P A;  1SI3 A;  4NHA A;  4NH6 A;  3DLH A;  4Z4C A;  4Z4G A; 
#chains in the Genus database with same CATH homology
 4NGG A;  3HJF A;  4F3T A;  3U1U A;  4OLA A;  4NGB A;  4NH3 A;  3O6E X;  1T2R A;  4Z4I A;  1R6Z A;  4NGF A;  4Z4E A;  4KRF A;  3HO1 A;  3O7V X;  3F73 A;  5JS2 A;  1Z25 A;  4Z4F A;  5JS1 A;  3HK2 A;  4W5T A;  1T2S A;  3O7X A;  5KI6 A;  3HVR A;  3MJ0 A;  2FFL A;  4Z4H A;  1Z26 A;  4W5Q A;  4OLB A;  3DA5 A;  2DB9 A;  4L1U A;  1SI2 A;  1U04 A;  2XFM A;  4NGC A;  5T7B A;  2QVW A;  3HM9 A;  3DLB A;  3O3I X;  1R4K A;  2L5C A;  4W5O A;  2L5D A;  2BZE A;  4NGD A;  4KRE A;  4W5N A;  1VYN A;  3QIR A;  4W5R A;  4NH5 A;  4L1P A;  1SI3 A;  4NHA A;  4NH6 A;  3DLH A;  4Z4C A;  4Z4G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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