3U1YA

Potent inhibitors of lpxc for the treatment of gram-negative infections
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
299
structure length
299
Chain Sequence
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISYMRP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Potent inhibitors of LpxC for the treatment of Gram-negative infections.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Hydrolase/hydrolase inhibitor
total genus 89
structure length 299
sequence length 299
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2011-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 3u1yA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 3u1yA02
5DRPA 3P3CA 2J65A 4IS9A 3PS1A 3NZKA 4ISAA 5DROA 4FW5A 3PS3A 2O3ZA 4FW7A 4MQYA 4MDTA 1XXEA 4FW4A 3P3GA 3P3EA 3U1YA 2VESA 2GO3A 4OZEA 5DRQA 4OKGA 4LCFA 2IESA 4LCHA 2IERA 3PS2A 1YHCA 2GO4A 1P42A 3P76A 4FW6A 2JT2A 4FW3A 3UHMA 4U3DA 4LCGA 1YH8A 5DRRA 4J3DA 4U3BA
chains in the Genus database with same CATH superfamily
4LF6E 4LFCI 4B3TI 2CGEA 4B3MI 4RPFA 4FWGA 5C0XE 4LF8E 2HKEA 2C39B 4MDTA 4UT4A 4LFBE 3J7AM 3KRNA 5ELWA 1XNRE 1Y60A 5JEAC 1HR0E 1PKPA 4JI3E 4DV0E 4AQYI 1N32I 5K36F 2C37A 4OO1C 2GQ0A 3U1KA 1MX0A 2JE6B 4NXNE 4GKKI 4JI2I 5DROA 3PS3A 2DEIA 4JV5I 2Z5EA 3D4JA 5DNXA 1UEKA 1VI7A 3ZM7A 4DR1E 1ZM4A 2NN6E 1ZM3A 2UUAI 4JYAI 4HXZA 2JT2A 5DNLA 4DR6I 1N36E 4DV2E 4X65I 4JI1E 3J7AG 4AIDA 2HHHI 5DRPA 4AM3A 3PS1A 4DV5I 4DV6E 3H4LA 3HULA 4MYTA 4LF9E 1FWLA 1H7UA 4FN5A 1Y5YA 2JE6A 2X7IA 1ZXMA 3P3GA 2VQEI 2GS8A 4PU9A 4HACB 4LFAE 1OYRA 4MU3A 1PIEA 1ZM9A 4DR4I 1Z59A 1N33E 1FWKA 3ZZUA 1HNWI 4JI6E 4GKJI 4DR2I 1NZ0A 4XTJA 1XMOE 3J80Q 2BA1G 4FW9A 4B3RI 2VQFI 1HNXI 1UDOA 3P3EA 1XMQI 1FNMA 5IWAI 5LMNI 2JEBA 1OYSA 4KHPI 2IERA 3ZZTA 2HFSA 2IOPA 4DV1E 1S4EA 4LF4E 4HACA 1N0VC 2VF3A 3F0NA 1Z0WA 3T1HE 2HK2A 2BM0A 1Z0VA 4U3DA 4DR5I 4P52A 3B4TA 3J80C 4DR3I 4USMA 1H72C 2BA0G 4OX9I 2BV3A 3K17A 3ZZ0A 4JI5I 1WUUA 2HFUA 3QT6A 1ELOA 3PYGA 4YY3I 1KKHA 1IBMI 4X64I 4DV4I 4IFDD 2NN6A 1I94I 3Q6NA 2C37B 1N34E 3JAMQ 4DUYI 5FLXC 2O1UA 4FW3A 4DXLA 2EFGA 4IFDE 2BM1A 4J3DA 1NHIA 4LOMA 3B82A 3WU3A 1UDSA 4QNKA 2ZM6E 5C0XD 1Z0TA 2PO0A 4B3SE 2A2DA 2UXDE 4EMDA 5K36E 2VESA 5A2QQ 4GQUA 1D6TA 1XNQE 1DARA 3ZKDA 3JAMC 2CG9A 2UXBI 2Z5CB 2WNRA 4ED4A 4LF5I 4NBQA 5L3JA 3T1YI 4DV3E 2UU9I 3DD6A 4JI7E 1HNZE 4K0KI 1Z0BA 4DUZI 5JEAE 4JI8E 4QNJA 4OO1D 2A2CA 4BA1B 2UUBI 4LF6I 2C38B 2UXCE 2DEJA 5A2QC 4OO1E 4JYAE 2Z5BA 2NN6D 4KQVA 1IBKE 2BA1D 4FWHA 4PRXA 4DR6E 1FKAE 4IFDB 5C0XF 4LFBI 4DPXA 1XNRI 1B63A 2PO1A 3B8HA 3UHMA 1HR0I 2Z5CA 4DV0I 4MU0A 2LJPA 4YHHE 2J65A 5C0XB 3B78A 3Q6MA 2WW4A 4IS9A 4MYUA 1J5EE 5LMUE 4WUCA 4DR7E 1USVA 4NXNI 2JEBB 4JI0E 4DR4E 4X62E 2BA0D 4BA1A 4IZJD 2C38A 2IOQA 4LCFA 1H73A 2GO4A 1Z5CA 2PNZA 1KTVA 1ZXNA 4P7AA 4PRVA 1R6MA 2V8PA 4DR1I 3M6AA 3OTOE 4DR2E 4IFDA 4FWDA 4DPTA 2WP8A 4HYMA 5DRRA 3WU5A 2NN6F 2Q2EB 2E1RA 1N36I 4DV2I 4JI1I 4Z7CA 4B3RE 4ISAA 2PNLA 1FI4A 5LMNE 4OO1B 3M7ND 3GLLA 4DV7E 5C0XA 2O1TA 4LF9I 2F4VE 1Y4UA 4LF7E 2NN6B 4MU1A 3Q1QA 4LFAI 4DR5E 2E5LI 4FW6A 1E3HA 5BR8E 4NXME 5FLXQ 4DR3E 2UUCE 1NHJA 3LPSA 1N33I 1IBLI 2PO0B 5JEAA 4X66E 1R6LA 3NZKA 3PYDA 2PNMA 1Z0GA 1XMOI 2BR2B 3HJCA 4OO1A 2F1DA 3CDJA 4DUYE 4IZJB 1Z0CA 2HKJA 2WNRB 2XEXA 4M1KA 3WU4A 4LPFA 5EKWA 4JI4I 2CZ9A 1H7SA 2CVEA 1FJGI 4N3OA 4LFCE 4LF4I 1YH8A 4B3TE 5LL6R 4B3ME 3PYEA 3HKMA 5K36D 2O3ZA 4IFDC 4FW7A 2O1VA 2Z5BB 4DPUA 1A6FA 2UXBE 3K1JA 2GO3A 4BA2A 5GMEA 1ZM2A 4AQYE 4LF5E 1N32E 2PO1B 2BR2A 2O1WA 4IZKA 1VISA 5C0XC 4IZJA 1RR9A 4DU7A 1EA6A 2JEAB 4DUZE 1KIJA 4MU4A 4GKKE 4JI2E 4LCGA 1PVGA 5JEAD 2X36A 2UUBE 4JV5E 3P3CA 2ZBKB 4UTGA 2ZITA 4IFDF 2ZM6I 1QZRA 4DPYA 2V2VA 3J81Q 1Z5AA 1EI1A 2PNZB 3M85G 2UUAE 4B3SI 4LF8I 2UXDI 4OKGA 2IESA 1H74A 4X65E 3P76A 1XNQI 2HHHE 2WP8B 1N0UA 3GMEA 3K85A 1K47A 1KVKA 3CDIA 3LNUA 1RREA 4DV5E 4JI3I 1Y6ZA 2JEAA 3WU6A 4DV3I 2NN6C 3PRYA 3V2UC 4JI7I 4URLA 1HNZI 5K36B 2VQEE 4DU8A 1UDNA 3J81C 4JI8I 1XXEA 3U1YA 4AIMA 5DRQA 2HK3A 5JEAF 2C39A 1XHKA 3GCMA 2UXCI 3L7ZB 3PS2A 1MG7A 2R3VA 1IBKI 1HNWE 4OO1F 4ZVIA 3CWVA 4GKJE 5GMDA 5JEAB 1Y4SA 4DPWA 2VQFE 2R42A 1OYPA 1HNXE 1XMQE 3H1CA 5IWAE 3LTOA 2PO2B 4YHHI 4MQYA 1J5EI 4JG4A 5LMUI 2V2QA 4DV6I 4KHPE 4FW4A 5K36A 4DR7I 1NHHA 2V34A 3QT8A 4OZEA 4WUDA 2E5LE 1YHCA 4JI0I 4X62I 5IT9Q 3PYFA 1IBLE 3L7ZA 4I3HA 1OJ4A 4Z7YA 3QT5A 4USKA 1MU5A 3OTOI 4OX9E 2AJ4A 4JI5E 2OI2A 1USUA 4FW5A 1RHYA 4JI6I 4BA2B 4YY3E 1IBME 4X64E 1E3PA 4DV4E 1BKNA 1B62A 1I94E 4JI4E 4IZKB 4WUBA 4DV7I 2PO2A 5IT9C 2AE8A 1FJGE 2F4VI 4LF7I 3QT7A 3P06A 3M85D 1U2RA 5EL9A 4DV1I 5FWKA 2J7KA 1S16A 5BR8I 4NXMI 1Z5BA 2UUCI 3T1HI 4R1FA 4X66I 2NPFA 3V5RA 1HK7A 4HY1A 1Z0EA 4LCHA 3GONA 3T1YE 1P42A 1UDQA 2UU9E 4K0KE 2V2ZA 5K36C 3M7NG 3ZKBA 4U3BA 1N34I
chains in the Genus database with same CATH topology
5DRPA 3P3CA 2J65A 4IS9A 3PS1A 3NZKA 4ISAA 5DROA 4FW5A 3PS3A 2O3ZA 4FW7A 4MQYA 4MDTA 1XXEA 4FW4A 3P3GA 3P3EA 3U1YA 2VESA 2GO3A 4OZEA 5DRQA 4OKGA 4LCFA 2IESA 4LCHA 2IERA 3PS2A 1YHCA 2GO4A 1P42A 3P76A 4FW6A 2JT2A 4FW3A 3UHMA 4U3DA 4LCGA 1YH8A 5DRRA 4J3DA 4U3BA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 5DRP A;  3P3C A;  2J65 A;  4IS9 A;  3PS1 A;  3NZK A;  4ISA A;  5DRO A;  4FW5 A;  3PS3 A;  2O3Z A;  4FW7 A;  4MQY A;  4MDT A;  1XXE A;  4FW4 A;  3P3G A;  3P3E A;  3U1Y A;  2VES A;  2GO3 A;  4OZE A;  5DRQ A;  4OKG A;  4LCF A;  2IES A;  4LCH A;  2IER A;  3PS2 A;  1YHC A;  2GO4 A;  1P42 A;  3P76 A;  4FW6 A;  2JT2 A;  4FW3 A;  3UHM A;  4U3D A;  4LCG A;  1YH8 A;  5DRR A;  4J3D A;  4U3B A; 
#chains in the Genus database with same CATH topology
 4LF6 E;  4LFC I;  4B3T I;  2CGE A;  4B3M I;  4RPF A;  4FWG A;  5C0X E;  4LF8 E;  2HKE A;  2C39 B;  4MDT A;  4UT4 A;  4LFB E;  3J7A M;  3KRN A;  5ELW A;  1XNR E;  1Y60 A;  5JEA C;  1HR0 E;  1PKP A;  4JI3 E;  4DV0 E;  4AQY I;  1N32 I;  5K36 F;  2C37 A;  4OO1 C;  2GQ0 A;  3U1K A;  1MX0 A;  2JE6 B;  4NXN E;  4GKK I;  4JI2 I;  5DRO A;  3PS3 A;  2DEI A;  4JV5 I;  2Z5E A;  3D4J A;  5DNX A;  1UEK A;  1VI7 A;  3ZM7 A;  4DR1 E;  1ZM4 A;  2NN6 E;  1ZM3 A;  2UUA I;  4JYA I;  4HXZ A;  2JT2 A;  5DNL A;  4DR6 I;  1N36 E;  4DV2 E;  4X65 I;  4JI1 E;  3J7A G;  4AID A;  2HHH I;  5DRP A;  4AM3 A;  3PS1 A;  4DV5 I;  4DV6 E;  3H4L A;  3HUL A;  4MYT A;  4LF9 E;  1FWL A;  1H7U A;  4FN5 A;  1Y5Y A;  2JE6 A;  2X7I A;  1ZXM A;  3P3G A;  2VQE I;  2GS8 A;  4PU9 A;  4HAC B;  4LFA E;  1OYR A;  4MU3 A;  1PIE A;  1ZM9 A;  4DR4 I;  1Z59 A;  1N33 E;  1FWK A;  3ZZU A;  1HNW I;  4JI6 E;  4GKJ I;  4DR2 I;  1NZ0 A;  4XTJ A;  1XMO E;  3J80 Q;  2BA1 G;  4FW9 A;  4B3R I;  2VQF I;  1HNX I;  1UDO A;  3P3E A;  1XMQ I;  1FNM A;  5IWA I;  5LMN I;  2JEB A;  1OYS A;  4KHP I;  2IER A;  3ZZT A;  2HFS A;  2IOP A;  4DV1 E;  1S4E A;  4LF4 E;  4HAC A;  1N0V C;  2VF3 A;  3F0N A;  1Z0W A;  3T1H E;  2HK2 A;  2BM0 A;  1Z0V A;  4U3D A;  4DR5 I;  4P52 A;  3B4T A;  3J80 C;  4DR3 I;  4USM A;  1H72 C;  2BA0 G;  4OX9 I;  2BV3 A;  3K17 A;  3ZZ0 A;  4JI5 I;  1WUU A;  2HFU A;  3QT6 A;  1ELO A;  3PYG A;  4YY3 I;  1KKH A;  1IBM I;  4X64 I;  4DV4 I;  4IFD D;  2NN6 A;  1I94 I;  3Q6N A;  2C37 B;  1N34 E;  3JAM Q;  4DUY I;  5FLX C;  2O1U A;  4FW3 A;  4DXL A;  2EFG A;  4IFD E;  2BM1 A;  4J3D A;  1NHI A;  4LOM A;  3B82 A;  3WU3 A;  1UDS A;  4QNK A;  2ZM6 E;  5C0X D;  1Z0T A;  2PO0 A;  4B3S E;  2A2D A;  2UXD E;  4EMD A;  5K36 E;  2VES A;  5A2Q Q;  4GQU A;  1D6T A;  1XNQ E;  1DAR A;  3ZKD A;  3JAM C;  2CG9 A;  2UXB I;  2Z5C B;  2WNR A;  4ED4 A;  4LF5 I;  4NBQ A;  5L3J A;  3T1Y I;  4DV3 E;  2UU9 I;  3DD6 A;  4JI7 E;  1HNZ E;  4K0K I;  1Z0B A;  4DUZ I;  5JEA E;  4JI8 E;  4QNJ A;  4OO1 D;  2A2C A;  4BA1 B;  2UUB I;  4LF6 I;  2C38 B;  2UXC E;  2DEJ A;  5A2Q C;  4OO1 E;  4JYA E;  2Z5B A;  2NN6 D;  4KQV A;  1IBK E;  2BA1 D;  4FWH A;  4PRX A;  4DR6 E;  1FKA E;  4IFD B;  5C0X F;  4LFB I;  4DPX A;  1XNR I;  1B63 A;  2PO1 A;  3B8H A;  3UHM A;  1HR0 I;  2Z5C A;  4DV0 I;  4MU0 A;  2LJP A;  4YHH E;  2J65 A;  5C0X B;  3B78 A;  3Q6M A;  2WW4 A;  4IS9 A;  4MYU A;  1J5E E;  5LMU E;  4WUC A;  4DR7 E;  1USV A;  4NXN I;  2JEB B;  4JI0 E;  4DR4 E;  4X62 E;  2BA0 D;  4BA1 A;  4IZJ D;  2C38 A;  2IOQ A;  4LCF A;  1H73 A;  2GO4 A;  1Z5C A;  2PNZ A;  1KTV A;  1ZXN A;  4P7A A;  4PRV A;  1R6M A;  2V8P A;  4DR1 I;  3M6A A;  3OTO E;  4DR2 E;  4IFD A;  4FWD A;  4DPT A;  2WP8 A;  4HYM A;  5DRR A;  3WU5 A;  2NN6 F;  2Q2E B;  2E1R A;  1N36 I;  4DV2 I;  4JI1 I;  4Z7C A;  4B3R E;  4ISA A;  2PNL A;  1FI4 A;  5LMN E;  4OO1 B;  3M7N D;  3GLL A;  4DV7 E;  5C0X A;  2O1T A;  4LF9 I;  2F4V E;  1Y4U A;  4LF7 E;  2NN6 B;  4MU1 A;  3Q1Q A;  4LFA I;  4DR5 E;  2E5L I;  4FW6 A;  1E3H A;  5BR8 E;  4NXM E;  5FLX Q;  4DR3 E;  2UUC E;  1NHJ A;  3LPS A;  1N33 I;  1IBL I;  2PO0 B;  5JEA A;  4X66 E;  1R6L A;  3NZK A;  3PYD A;  2PNM A;  1Z0G A;  1XMO I;  2BR2 B;  3HJC A;  4OO1 A;  2F1D A;  3CDJ A;  4DUY E;  4IZJ B;  1Z0C A;  2HKJ A;  2WNR B;  2XEX A;  4M1K A;  3WU4 A;  4LPF A;  5EKW A;  4JI4 I;  2CZ9 A;  1H7S A;  2CVE A;  1FJG I;  4N3O A;  4LFC E;  4LF4 I;  1YH8 A;  4B3T E;  5LL6 R;  4B3M E;  3PYE A;  3HKM A;  5K36 D;  2O3Z A;  4IFD C;  4FW7 A;  2O1V A;  2Z5B B;  4DPU A;  1A6F A;  2UXB E;  3K1J A;  2GO3 A;  4BA2 A;  5GME A;  1ZM2 A;  4AQY E;  4LF5 E;  1N32 E;  2PO1 B;  2BR2 A;  2O1W A;  4IZK A;  1VIS A;  5C0X C;  4IZJ A;  1RR9 A;  4DU7 A;  1EA6 A;  2JEA B;  4DUZ E;  1KIJ A;  4MU4 A;  4GKK E;  4JI2 E;  4LCG A;  1PVG A;  5JEA D;  2X36 A;  2UUB E;  4JV5 E;  3P3C A;  2ZBK B;  4UTG A;  2ZIT A;  4IFD F;  2ZM6 I;  1QZR A;  4DPY A;  2V2V A;  3J81 Q;  1Z5A A;  1EI1 A;  2PNZ B;  3M85 G;  2UUA E;  4B3S I;  4LF8 I;  2UXD I;  4OKG A;  2IES A;  1H74 A;  4X65 E;  3P76 A;  1XNQ I;  2HHH E;  2WP8 B;  1N0U A;  3GME A;  3K85 A;  1K47 A;  1KVK A;  3CDI A;  3LNU A;  1RRE A;  4DV5 E;  4JI3 I;  1Y6Z A;  2JEA A;  3WU6 A;  4DV3 I;  2NN6 C;  3PRY A;  3V2U C;  4JI7 I;  4URL A;  1HNZ I;  5K36 B;  2VQE E;  4DU8 A;  1UDN A;  3J81 C;  4JI8 I;  1XXE A;  3U1Y A;  4AIM A;  5DRQ A;  2HK3 A;  5JEA F;  2C39 A;  1XHK A;  3GCM A;  2UXC I;  3L7Z B;  3PS2 A;  1MG7 A;  2R3V A;  1IBK I;  1HNW E;  4OO1 F;  4ZVI A;  3CWV A;  4GKJ E;  5GMD A;  5JEA B;  1Y4S A;  4DPW A;  2VQF E;  2R42 A;  1OYP A;  1HNX E;  1XMQ E;  3H1C A;  5IWA E;  3LTO A;  2PO2 B;  4YHH I;  4MQY A;  1J5E I;  4JG4 A;  5LMU I;  2V2Q A;  4DV6 I;  4KHP E;  4FW4 A;  5K36 A;  4DR7 I;  1NHH A;  2V34 A;  3QT8 A;  4OZE A;  4WUD A;  2E5L E;  1YHC A;  4JI0 I;  4X62 I;  5IT9 Q;  3PYF A;  1IBL E;  3L7Z A;  4I3H A;  1OJ4 A;  4Z7Y A;  3QT5 A;  4USK A;  1MU5 A;  3OTO I;  4OX9 E;  2AJ4 A;  4JI5 E;  2OI2 A;  1USU A;  4FW5 A;  1RHY A;  4JI6 I;  4BA2 B;  4YY3 E;  1IBM E;  4X64 E;  1E3P A;  4DV4 E;  1BKN A;  1B62 A;  1I94 E;  4JI4 E;  4IZK B;  4WUB A;  4DV7 I;  2PO2 A;  5IT9 C;  2AE8 A;  1FJG E;  2F4V I;  4LF7 I;  3QT7 A;  3P06 A;  3M85 D;  1U2R A;  5EL9 A;  4DV1 I;  5FWK A;  2J7K A;  1S16 A;  5BR8 I;  4NXM I;  1Z5B A;  2UUC I;  3T1H I;  4R1F A;  4X66 I;  2NPF A;  3V5R A;  1HK7 A;  4HY1 A;  1Z0E A;  4LCH A;  3GON A;  3T1Y E;  1P42 A;  1UDQ A;  2UU9 E;  4K0K E;  2V2Z A;  5K36 C;  3M7N G;  3ZKB A;  4U3B A;  1N34 I; 
#chains in the Genus database with same CATH homology
 5DRP A;  3P3C A;  2J65 A;  4IS9 A;  3PS1 A;  3NZK A;  4ISA A;  5DRO A;  4FW5 A;  3PS3 A;  2O3Z A;  4FW7 A;  4MQY A;  4MDT A;  1XXE A;  4FW4 A;  3P3G A;  3P3E A;  3U1Y A;  2VES A;  2GO3 A;  4OZE A;  5DRQ A;  4OKG A;  4LCF A;  2IES A;  4LCH A;  2IER A;  3PS2 A;  1YHC A;  2GO4 A;  1P42 A;  3P76 A;  4FW6 A;  2JT2 A;  4FW3 A;  3UHM A;  4U3D A;  4LCG A;  1YH8 A;  5DRR A;  4J3D A;  4U3B A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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