3U1YA

Potent inhibitors of lpxc for the treatment of gram-negative infections
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
299
structure length
299
Chain Sequence
MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISYMRP
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Potent inhibitors of LpxC for the treatment of Gram-negative infections.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Hydrolase/hydrolase inhibitor
molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
total genus 89
structure length 299
sequence length 299
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2011-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 3u1yA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 3u1yA02
3UHMA 4IS9A 2GO3A 3U1YA 3P3GA 3P3CA 3PS2A 1P42A 2VESA 4FW4A 3PS3A 2IERA 4U3DA 1YH8A 5DRQA 4FW7A 4FW5A 4J3DA 3P76A 4OZEA 2JT2A 4FW6A 4ISAA 3P3EA 4MDTA 4MQYA 4FW3A 3NZKA 4OKGA 2IESA 3PS1A 4LCGA 4U3BA 1YHCA 1XXEA 5DRPA 4LCHA 2GO4A 2J65A 4LCFA 5DROA 5DRRA 2O3ZA
chains in the Genus database with same CATH superfamily
1FWKA 3U1YA 2CG9A 2UUAI 2PNLA 2PO0B 2PO2A 2AJ4A 4IFDF 2C37A 4FW9A 5C0XF 1XMQI 4FW5A 4KHPE 2DEIA 1NHJA 4LF5E 2Z5BB 2ZITA 2VF3A 1Z5CA 4YHHE 4UT4A 4LF8E 4DV2E 3V5RA 2UXCE 1B63A 4MYTA 1KIJA 5LMNI 4AM3A 1OYRA 1KTVA 5LMUI 1EA6A 2ZM6E 1B62A 2NN6A 3HULA 4JV5I 4LCFA 5LMUE 4DV5I 2J7KA 1H73A 4HACB 1U2RA 3JAMC 3ZZTA 5DNLA 2VQFE 1Z0BA 4OO1A 3LTOA 2UXDI 5JEAE 2VQFI 1S4EA 4IFDB 4HY1A 4MU1A 3M7ND 5JEAB 4LCHA 1N34I 1R6LA 1IBKI 2C37B 1Z0EA 5DROA 4BA1A 2PNMA 4DV2I 1N34E 1IBKE 5IWAE 4AIMA 2X7IA 4IZJA 2BV3A 3M85G 4LFBE 2HKJA 4JI1I 3CWVA 1Z0VA 1UEKA 1N0VC 2NN6B 3P76A 3ZM7A 2PO1B 4JI1E 2IOPA 4USKA 4DR3I 4DPUA 1E3HA 5LL6R 4HACA 4U3BA 4P52A 1YHCA 4USMA 2NN6E 1N0UA 3WU5A 4UTGA 1OJ4A 1J5EE 1ZM4A 5DNXA 2UUBE 2Q2EB 2ZM6I 1I94I 1MX0A 1Y4SA 5FWKA 1EI1A 4JI5E 1ZXNA 3B78A 4WUBA 2WNRB 2IERA 4MU3A 2LJPA 1ELOA 4GKKI 4DU8A 2UXBI 1HK7A 2Z5EA 4B3SE 2C38B 4FW6A 1H7UA 1NZ0A 1UDQA 3CDJA 4MDTA 2PNZA 1UDNA 4DPYA 5JEAC 4DR6E 3PYGA 3KRNA 3WU4A 4MU4A 4YY3I 5C0XD 3U1KA 4NXMI 4DR6I 4AQYE 5DRRA 4JI7E 3J7AM 4NXME 3GONA 4DR2I 2UXCI 3H1CA 4DV4I 4K0KI 3QT5A 3WU6A 1UDOA 2VQEI 2DEJA 2JE6B 4J3DA 4LFBI 2HHHI 2ZBKB 4DR4E 4JV5E 3T1HI 1IBMI 4IFDD 3OTOE 3JAMQ 4DV0I 2WNRA 2BM0A 2O1UA 2GQ0A 4XTJA 4DPWA 4DV7E 5BR8E 4DPXA 1USUA 3L7ZA 4Z7YA 5K36C 1P42A 1Z0CA 4QNKA 2E1RA 1YH8A 4PRXA 4KHPI 1NHHA 3QT7A 5C0XB 4ZVIA 2O1WA 2V2ZA 4JG4A 4JI3I 4LF7I 3QT6A 5DRPA 4I3HA 5C0XE 1MG7A 4MYUA 5JEAF 4JYAI 4IZKA 1HNWI 2WP8A 4URLA 4DR3E 5L3JA 2GO3A 1IBME 3OTOI 2BR2B 4B3RI 2E5LI 2V2VA 1PIEA 2UXDE 4OO1F 4ED4A 2E5LE 5JEAD 4K0KE 1VISA 2VQEE 1RHYA 2V8PA 3B82A 5IT9C 2UUBI 4DR4I 4JI0I 2NN6F 2CZ9A 3B8HA 4DV1E 1FNMA 4LPFA 3T1HE 1IBLI 4DUZI 4DPTA 4PU9A 3LNUA 3ZZUA 4DUYE 3Q6MA 5EKWA 5FLXQ 1Z59A 2NPFA 2R42A 5ELWA 1HR0E 1N32E 5GMEA 1Z5BA 1FI4A 4OO1E 4M1KA 2J65A 1J5EI 4JI3E 4P7AA 2GS8A 4YHHI 4LF8I 2HHHE 2C39B 4DV3E 4DR1I 4JI8I 2UXBE 4BA1B 3J81C 1PVGA 4B3RE 2A2DA 3K17A 4DUYI 4LF4E 1Y6ZA 3J81Q 1Y4UA 1Z0GA 4NXNI 1XXEA 2JEBA 2BA0D 4JI7I 4DR5I 2PO1A 1ZM2A 2AE8A 5A2QC 4LF7E 1HNZE 3J80C 3J7AG 4GKKE 3PS3A 1Y60A 4B3SI 4LFCI 1HNZI 4JI8E 5FLXC 4IFDE 1R6MA 2BA1G 3D4JA 4JI4I 3LPSA 4B3TE 2HFSA 3HKMA 1KKHA 2PO2B 2CVEA 2CGEA 4AQYI 1FKAE 2GO4A 1HR0I 2WW4A 4NXNE 1HNXI 2X36A 1XNRI 4AIDA 4HXZA 2JEBB 3PRYA 4X64I 1XMQE 3K85A 1I94E 3P3EA 1Z5AA 2F1DA 4JI6E 5C0XC 3NZKA 5K36F 4X62E 5IWAI 3ZKBA 4JI2I 4OX9E 4JI0E 3K1JA 1N36I 1IBLE 2XEXA 4OX9I 1D6TA 1MU5A 4FWHA 4FWDA 4JYAE 1HNWE 1BKNA 1XHKA 1WUUA 4Z7CA 2F4VE 1N32I 3J80Q 2OI2A 4U3DA 5DRQA 5JEAA 2O1TA 3PYDA 4FWGA 1S16A 1XNRE 2R3VA 1E3PA 4MQYA 3T1YI 4IFDC 4B3MI 4DV3I 1QZRA 2Z5CB 4DV4E 4DR1E 4GKJI 5K36A 4IZJB 1NHIA 3WU3A 2HK3A 4B3TI 4BA2B 3QT8A 4X62I 4JI2E 1Z0TA 4LF6E 3P06A 4LF4I 2V2QA 3P3GA 4R1FA 4WUCA 4LFAE 4X65E 4DV6E 1XMOI 4FW4A 4LF9I 1N33E 1OYPA 1RREA 1Z0WA 2HFUA 3CDIA 4NBQA 2WP8B 2V34A 4ISAA 4N3OA 3M7NG 1A6FA 2BR2A 4WUDA 3DD6A 4DR2E 1H72C 2BM1A 5K36E 2JEAA 2EFGA 4KQVA 4PRVA 5A2QQ 2BA1D 5LMNE 4DV1I 2C38A 3GCMA 3M85D 1DARA 1N36E 4JI4E 1XNQI 2PNZB 2Z5CA 4X66E 1ZXMA 1ZM3A 3ZKDA 5K36B 2A2CA 4OO1C 4IZJD 1USVA 4X66I 3PYEA 4BA2A 1HNXE 2NN6C 4OKGA 2IESA 3PS1A 5IT9Q 1K47A 2UUCI 1Y5YA 1FJGI 1ZM9A 2JE6A 3ZZ0A 4GKJE 1OYSA 1FJGE 4IS9A 2IOQA 3Q6NA 4QNJA 5K36D 4DR7I 1H74A 4X64E 2VESA 3B4TA 1RR9A 2JEAB 4EMDA 4LFCE 4JI6I 1VI7A 1XNQE 2NN6D 4X65I 2C39A 2HKEA 4RPFA 4LF9E 1N33I 2F4VI 2PO0A 3L7ZB 1FWLA 5EL9A 3HJCA 4GQUA 2UUAE 4YY3E 4DR5E 4DU7A 4OO1D 4MU0A 2O3ZA 3GLLA 2Z5BA 4HYMA 5C0XA 4DV7I 3GMEA 2O1VA 4B3ME 3UHMA 2UUCE 4LF5I 3P3CA 3PS2A 3F0NA 2HK2A 4FW7A 3T1YE 1KVKA 3PYFA 4JI5I 4OZEA 2JT2A 4DR7E 2BA0G 4IZKB 4LOMA 3Q1QA 4FW3A 3H4LA 4LFAI 4DUZE 1UDSA 4DV6I 4LCGA 4DV5E 1XMOE 4OO1B 1PKPA 2UU9E 5GMDA 4DV0E 4LF6I 3V2UC 1H7SA 4FN5A 4DXLA 4IFDA 3M6AA 5BR8I 2UU9I
chains in the Genus database with same CATH topology
3UHMA 4IS9A 2GO3A 3U1YA 3P3GA 3P3CA 3PS2A 1P42A 2VESA 4FW4A 3PS3A 2IERA 4U3DA 1YH8A 5DRQA 4FW7A 4FW5A 4J3DA 3P76A 4OZEA 2JT2A 4FW6A 4ISAA 3P3EA 4MDTA 4MQYA 4FW3A 3NZKA 4OKGA 2IESA 3PS1A 4LCGA 4U3BA 1YHCA 1XXEA 5DRPA 4LCHA 2GO4A 2J65A 4LCFA 5DROA 5DRRA 2O3ZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3UHM A;  4IS9 A;  2GO3 A;  3U1Y A;  3P3G A;  3P3C A;  3PS2 A;  1P42 A;  2VES A;  4FW4 A;  3PS3 A;  2IER A;  4U3D A;  1YH8 A;  5DRQ A;  4FW7 A;  4FW5 A;  4J3D A;  3P76 A;  4OZE A;  2JT2 A;  4FW6 A;  4ISA A;  3P3E A;  4MDT A;  4MQY A;  4FW3 A;  3NZK A;  4OKG A;  2IES A;  3PS1 A;  4LCG A;  4U3B A;  1YHC A;  1XXE A;  5DRP A;  4LCH A;  2GO4 A;  2J65 A;  4LCF A;  5DRO A;  5DRR A;  2O3Z A; 
#chains in the Genus database with same CATH topology
 1FWK A;  3U1Y A;  2CG9 A;  2UUA I;  2PNL A;  2PO0 B;  2PO2 A;  2AJ4 A;  4IFD F;  2C37 A;  4FW9 A;  5C0X F;  1XMQ I;  4FW5 A;  4KHP E;  2DEI A;  1NHJ A;  4LF5 E;  2Z5B B;  2ZIT A;  2VF3 A;  1Z5C A;  4YHH E;  4UT4 A;  4LF8 E;  4DV2 E;  3V5R A;  2UXC E;  1B63 A;  4MYT A;  1KIJ A;  5LMN I;  4AM3 A;  1OYR A;  1KTV A;  5LMU I;  1EA6 A;  2ZM6 E;  1B62 A;  2NN6 A;  3HUL A;  4JV5 I;  4LCF A;  5LMU E;  4DV5 I;  2J7K A;  1H73 A;  4HAC B;  1U2R A;  3JAM C;  3ZZT A;  5DNL A;  2VQF E;  1Z0B A;  4OO1 A;  3LTO A;  2UXD I;  5JEA E;  2VQF I;  1S4E A;  4IFD B;  4HY1 A;  4MU1 A;  3M7N D;  5JEA B;  4LCH A;  1N34 I;  1R6L A;  1IBK I;  2C37 B;  1Z0E A;  5DRO A;  4BA1 A;  2PNM A;  4DV2 I;  1N34 E;  1IBK E;  5IWA E;  4AIM A;  2X7I A;  4IZJ A;  2BV3 A;  3M85 G;  4LFB E;  2HKJ A;  4JI1 I;  3CWV A;  1Z0V A;  1UEK A;  1N0V C;  2NN6 B;  3P76 A;  3ZM7 A;  2PO1 B;  4JI1 E;  2IOP A;  4USK A;  4DR3 I;  4DPU A;  1E3H A;  5LL6 R;  4HAC A;  4U3B A;  4P52 A;  1YHC A;  4USM A;  2NN6 E;  1N0U A;  3WU5 A;  4UTG A;  1OJ4 A;  1J5E E;  1ZM4 A;  5DNX A;  2UUB E;  2Q2E B;  2ZM6 I;  1I94 I;  1MX0 A;  1Y4S A;  5FWK A;  1EI1 A;  4JI5 E;  1ZXN A;  3B78 A;  4WUB A;  2WNR B;  2IER A;  4MU3 A;  2LJP A;  1ELO A;  4GKK I;  4DU8 A;  2UXB I;  1HK7 A;  2Z5E A;  4B3S E;  2C38 B;  4FW6 A;  1H7U A;  1NZ0 A;  1UDQ A;  3CDJ A;  4MDT A;  2PNZ A;  1UDN A;  4DPY A;  5JEA C;  4DR6 E;  3PYG A;  3KRN A;  3WU4 A;  4MU4 A;  4YY3 I;  5C0X D;  3U1K A;  4NXM I;  4DR6 I;  4AQY E;  5DRR A;  4JI7 E;  3J7A M;  4NXM E;  3GON A;  4DR2 I;  2UXC I;  3H1C A;  4DV4 I;  4K0K I;  3QT5 A;  3WU6 A;  1UDO A;  2VQE I;  2DEJ A;  2JE6 B;  4J3D A;  4LFB I;  2HHH I;  2ZBK B;  4DR4 E;  4JV5 E;  3T1H I;  1IBM I;  4IFD D;  3OTO E;  3JAM Q;  4DV0 I;  2WNR A;  2BM0 A;  2O1U A;  2GQ0 A;  4XTJ A;  4DPW A;  4DV7 E;  5BR8 E;  4DPX A;  1USU A;  3L7Z A;  4Z7Y A;  5K36 C;  1P42 A;  1Z0C A;  4QNK A;  2E1R A;  1YH8 A;  4PRX A;  4KHP I;  1NHH A;  3QT7 A;  5C0X B;  4ZVI A;  2O1W A;  2V2Z A;  4JG4 A;  4JI3 I;  4LF7 I;  3QT6 A;  5DRP A;  4I3H A;  5C0X E;  1MG7 A;  4MYU A;  5JEA F;  4JYA I;  4IZK A;  1HNW I;  2WP8 A;  4URL A;  4DR3 E;  5L3J A;  2GO3 A;  1IBM E;  3OTO I;  2BR2 B;  4B3R I;  2E5L I;  2V2V A;  1PIE A;  2UXD E;  4OO1 F;  4ED4 A;  2E5L E;  5JEA D;  4K0K E;  1VIS A;  2VQE E;  1RHY A;  2V8P A;  3B82 A;  5IT9 C;  2UUB I;  4DR4 I;  4JI0 I;  2NN6 F;  2CZ9 A;  3B8H A;  4DV1 E;  1FNM A;  4LPF A;  3T1H E;  1IBL I;  4DUZ I;  4DPT A;  4PU9 A;  3LNU A;  3ZZU A;  4DUY E;  3Q6M A;  5EKW A;  5FLX Q;  1Z59 A;  2NPF A;  2R42 A;  5ELW A;  1HR0 E;  1N32 E;  5GME A;  1Z5B A;  1FI4 A;  4OO1 E;  4M1K A;  2J65 A;  1J5E I;  4JI3 E;  4P7A A;  2GS8 A;  4YHH I;  4LF8 I;  2HHH E;  2C39 B;  4DV3 E;  4DR1 I;  4JI8 I;  2UXB E;  4BA1 B;  3J81 C;  1PVG A;  4B3R E;  2A2D A;  3K17 A;  4DUY I;  4LF4 E;  1Y6Z A;  3J81 Q;  1Y4U A;  1Z0G A;  4NXN I;  1XXE A;  2JEB A;  2BA0 D;  4JI7 I;  4DR5 I;  2PO1 A;  1ZM2 A;  2AE8 A;  5A2Q C;  4LF7 E;  1HNZ E;  3J80 C;  3J7A G;  4GKK E;  3PS3 A;  1Y60 A;  4B3S I;  4LFC I;  1HNZ I;  4JI8 E;  5FLX C;  4IFD E;  1R6M A;  2BA1 G;  3D4J A;  4JI4 I;  3LPS A;  4B3T E;  2HFS A;  3HKM A;  1KKH A;  2PO2 B;  2CVE A;  2CGE A;  4AQY I;  1FKA E;  2GO4 A;  1HR0 I;  2WW4 A;  4NXN E;  1HNX I;  2X36 A;  1XNR I;  4AID A;  4HXZ A;  2JEB B;  3PRY A;  4X64 I;  1XMQ E;  3K85 A;  1I94 E;  3P3E A;  1Z5A A;  2F1D A;  4JI6 E;  5C0X C;  3NZK A;  5K36 F;  4X62 E;  5IWA I;  3ZKB A;  4JI2 I;  4OX9 E;  4JI0 E;  3K1J A;  1N36 I;  1IBL E;  2XEX A;  4OX9 I;  1D6T A;  1MU5 A;  4FWH A;  4FWD A;  4JYA E;  1HNW E;  1BKN A;  1XHK A;  1WUU A;  4Z7C A;  2F4V E;  1N32 I;  3J80 Q;  2OI2 A;  4U3D A;  5DRQ A;  5JEA A;  2O1T A;  3PYD A;  4FWG A;  1S16 A;  1XNR E;  2R3V A;  1E3P A;  4MQY A;  3T1Y I;  4IFD C;  4B3M I;  4DV3 I;  1QZR A;  2Z5C B;  4DV4 E;  4DR1 E;  4GKJ I;  5K36 A;  4IZJ B;  1NHI A;  3WU3 A;  2HK3 A;  4B3T I;  4BA2 B;  3QT8 A;  4X62 I;  4JI2 E;  1Z0T A;  4LF6 E;  3P06 A;  4LF4 I;  2V2Q A;  3P3G A;  4R1F A;  4WUC A;  4LFA E;  4X65 E;  4DV6 E;  1XMO I;  4FW4 A;  4LF9 I;  1N33 E;  1OYP A;  1RRE A;  1Z0W A;  2HFU A;  3CDI A;  4NBQ A;  2WP8 B;  2V34 A;  4ISA A;  4N3O A;  3M7N G;  1A6F A;  2BR2 A;  4WUD A;  3DD6 A;  4DR2 E;  1H72 C;  2BM1 A;  5K36 E;  2JEA A;  2EFG A;  4KQV A;  4PRV A;  5A2Q Q;  2BA1 D;  5LMN E;  4DV1 I;  2C38 A;  3GCM A;  3M85 D;  1DAR A;  1N36 E;  4JI4 E;  1XNQ I;  2PNZ B;  2Z5C A;  4X66 E;  1ZXM A;  1ZM3 A;  3ZKD A;  5K36 B;  2A2C A;  4OO1 C;  4IZJ D;  1USV A;  4X66 I;  3PYE A;  4BA2 A;  1HNX E;  2NN6 C;  4OKG A;  2IES A;  3PS1 A;  5IT9 Q;  1K47 A;  2UUC I;  1Y5Y A;  1FJG I;  1ZM9 A;  2JE6 A;  3ZZ0 A;  4GKJ E;  1OYS A;  1FJG E;  4IS9 A;  2IOQ A;  3Q6N A;  4QNJ A;  5K36 D;  4DR7 I;  1H74 A;  4X64 E;  2VES A;  3B4T A;  1RR9 A;  2JEA B;  4EMD A;  4LFC E;  4JI6 I;  1VI7 A;  1XNQ E;  2NN6 D;  4X65 I;  2C39 A;  2HKE A;  4RPF A;  4LF9 E;  1N33 I;  2F4V I;  2PO0 A;  3L7Z B;  1FWL A;  5EL9 A;  3HJC A;  4GQU A;  2UUA E;  4YY3 E;  4DR5 E;  4DU7 A;  4OO1 D;  4MU0 A;  2O3Z A;  3GLL A;  2Z5B A;  4HYM A;  5C0X A;  4DV7 I;  3GME A;  2O1V A;  4B3M E;  3UHM A;  2UUC E;  4LF5 I;  3P3C A;  3PS2 A;  3F0N A;  2HK2 A;  4FW7 A;  3T1Y E;  1KVK A;  3PYF A;  4JI5 I;  4OZE A;  2JT2 A;  4DR7 E;  2BA0 G;  4IZK B;  4LOM A;  3Q1Q A;  4FW3 A;  3H4L A;  4LFA I;  4DUZ E;  1UDS A;  4DV6 I;  4LCG A;  4DV5 E;  1XMO E;  4OO1 B;  1PKP A;  2UU9 E;  5GMD A;  4DV0 E;  4LF6 I;  3V2U C;  1H7S A;  4FN5 A;  4DXL A;  4IFD A;  3M6A A;  5BR8 I;  2UU9 I; 
#chains in the Genus database with same CATH homology
 3UHM A;  4IS9 A;  2GO3 A;  3U1Y A;  3P3G A;  3P3C A;  3PS2 A;  1P42 A;  2VES A;  4FW4 A;  3PS3 A;  2IER A;  4U3D A;  1YH8 A;  5DRQ A;  4FW7 A;  4FW5 A;  4J3D A;  3P76 A;  4OZE A;  2JT2 A;  4FW6 A;  4ISA A;  3P3E A;  4MDT A;  4MQY A;  4FW3 A;  3NZK A;  4OKG A;  2IES A;  3PS1 A;  4LCG A;  4U3B A;  1YHC A;  1XXE A;  5DRP A;  4LCH A;  2GO4 A;  2J65 A;  4LCF A;  5DRO A;  5DRR A;  2O3Z A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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