3U1YA

Potent inhibitors of lpxc for the treatment of gram-negative infections
Total Genus 89
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
89
sequence length
299
structure length
299
Chain Sequence
b'MIKQRTLKNIIRATGVGLHSGEKVYLTLKPAPVDTGIVFSRTDLDPVVEIPARAENVGETTMSTTLVKGDVKVDTVEHLLSAMAGLGIDNAYVELSASEVPIMDGSAGPFVFLIQSAGLQEQEAAKKFIRIKREVSVEEGDKRAVFVPFDGFKVSFEIDFDHPVFRGRTQQASVDFSSTSFVKEVSRARTFGFMRDIEYLRSQNLALGGSVENAIVVDENRVLNEDGLRYEDEFVKHKILDAIGDLYLLGNSLIGEFRGFKSGHALNNQLLRTLIADKDAWEVVTFEDARTAPISYMRP'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
publication title Potent inhibitors of LpxC for the treatment of Gram-negative infections.
pubmed doi rcsb
source organism Pseudomonas aeruginosa
molecule tags Hydrolase/hydrolase inhibitor
total genus 89
structure length 299
sequence length 299
chains with identical sequence B
ec nomenclature ec 3.5.1.108: UDP-3-O-acyl-N-acetylglucosamine deacetylase.
pdb deposition date 2011-09-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.230.20 Alpha Beta 2-Layer Sandwich Ribosomal Protein S5; domain 2 lpxc deacetylase, domain 1 3u1yA01
3.30.1700.10 Alpha Beta 2-Layer Sandwich lpxc deacetylase, domain 1 lpxc deacetylase, domain 2 3u1yA02
1YHCA 4LCHA 4ISAA 4FW6A 4FW5A 4LCGA 4FW4A 4FW3A 4OKGA 5DROA 1YH8A 3P3EA 2GO4A 2GO3A 2J65A 2IESA 3U1YA 4MQYA 3NZKA 3PS3A 3PS2A 2IERA 2VESA 4MDTA 4FW7A 5DRPA 3P76A 3P3GA 4J3DA 3PS1A 4U3BA 2O3ZA 5DRQA 3UHMA 4OZEA 1XXEA 1P42A 4IS9A 2JT2A 5DRRA 4LCFA 4U3DA 3P3CA
chains in the Genus database with same CATH superfamily
3L7ZA 4FW5A 4LFAE 4URLA 2Q2EB 4LF7E 4HACA 4JV5I 2C38A 3M6AA 3KRNA 1NHHA 2A2CA 4NXNE 3WU4A 3ZM7A 2HFSA 5EKWA 2AJ4A 1Y4SA 2OI2A 2VF3A 1FKAE 4AM3A 1K47A 2ZM6E 4QNKA 2UUCI 2BA0D 1QZRA 3V5RA 4MYUA 1S16A 5C0XB 4JV5E 5LMNI 3LPSA 2NN6F 5JEAC 4IFDE 1HNWE 2Z5CA 5EL9A 4FW3A 4DV6I 1Y5YA 1IBME 1OYSA 2WP8A 3PS3A 1FJGE 2HKEA 2NN6D 2UUCE 2XEXA 2UXCI 4WUBA 4OX9I 1S4EA 4OO1C 4GQUA 2AE8A 2V2VA 4JYAI 5FWKA 1Y4UA 2PNZB 1HNXI 2UXDE 4AQYI 5FLXC 1Y6ZA 2CGEA 4B3ME 3M85D 1EI1A 3CDIA 1NHIA 1Z0EA 2LJPA 2UXCE 4OX9E 2R3VA 3QT8A 5DNLA 2V8PA 4JI1I 2VQEI 4JYAE 4LFBE 4AQYE 4LF6I 5IT9Q 3L7ZB 5JEAA 4FW6A 4IZJD 1PVGA 2O1VA 5K36E 1XNRI 4HACB 5A2QC 1XNQI 4LF5I 2Z5EA 4R1FA 1R6MA 5IWAI 4IFDC 1Z0BA 1USUA 4XTJA 1H73A 4JI1E 4HYMA 2UUAI 4UTGA 3J81C 4OO1A 4DV0I 2JEAA 3PYDA 3UHMA 4OZEA 4JI5I 3H1CA 1ZM4A 1RHYA 3PRYA 2ZBKB 3QT5A 4DV3E 3JAMC 2VQFI 1Z0GA 2PO0A 1XNRE 1UDNA 4ZVIA 1H7UA 2BA1D 1U2RA 2Z5CB 1XHKA 2BM1A 1N34I 2BR2A 4LF8I 4DU7A 2WP8B 3GLLA 3QT7A 3ZZUA 4B3SE 4WUDA 4MQYA 3ZKBA 5BR8E 1I94I 1XMQE 4QNJA 2HHHI 5DRPA 1EA6A 1N32E 2PO2A 5DRQA 1ZM3A 1KKHA 4LOMA 4K0KI 4NBQA 3CWVA 4DV2I 4GKJE 4DR3E 4LF4E 3PYGA 5C0XE 4DXLA 1N34E 4MYTA 4LF8E 2JE6A 4IFDA 3HKMA 4X64E 4DU8A 4JI4I 2F1DA 1J5EI 4OKGA 3U1KA 4DUZE 5K36F 4JI7I 5DNXA 2IESA 3K85A 2HHHE 4JI3I 3PS2A 3WU5A 2UUBI 1A6FA 4DV7I 4DUYI 2O1UA 3OTOE 4J3DA 3H4LA 4DR4I 2C37A 4DV1I 5K36D 4I3HA 4DR1I 4PRXA 4JI8I 4MU1A 5JEAB 1MU5A 1VISA 4DPXA 2NN6C 4DR6I 2PO1A 1YH8A 1ZXMA 4FWGA 5GMDA 4DV7E 1OJ4A 1HK7A 2UUBE 2Z5BB 5LL6R 4USMA 4OO1B 3WU3A 1IBLI 4DR1E 4JI2I 3GMEA 2UU9I 4JI8E 2GS8A 2O3ZA 1MG7A 1N0VC 4FWHA 5DRRA 3HULA 4DR5I 2PO0B 4LCFA 3M7ND 2NPFA 3Q1QA 3F0NA 5LMNE 4X65I 1FWLA 2E1RA 3CDJA 4DV6E 2GQ0A 4LPFA 5C0XF 1UDQA 1Z0TA 1IBLE 3NZKA 2BV3A 4YY3I 4JI2E 2UU9E 1Z5AA 5FLXQ 4ED4A 2R42A 4PU9A 5C0XD 2HK3A 4DR5E 1HNXE 3P3CA 2IOQA 4DPWA 2NN6A 4ISAA 4UT4A 2JE6B 4IFDB 4DR2I 1Z5CA 4JG4A 2WW4A 2C38B 2GO3A 3ZKDA 3ZZ0A 1HNZI 4NXMI 1D6TA 4MDTA 2VQEE 4DR7I 2BM0A 1ZXNA 3B82A 5A2QQ 3LTOA 2O1WA 4LF6E 4LF9I 2CVEA 2F4VI 1UDOA 4DR2E 5C0XA 1XNQE 4LF5E 3J81Q 2E5LI 1DARA 4X66I 2PO1B 3PYEA 5IWAE 3ZZTA 2PNLA 3JAMQ 2UUAE 1H72C 4IZJA 4DV0E 3GONA 2JEBA 3B4TA 4FW7A 5LMUI 4JI5E 2X36A 2VQFE 4M1KA 1Z5BA 3T1HI 4B3TI 1UEKA 1RR9A 4P7AA 4X66E 5JEAE 1Z0CA 4Z7CA 3J7AG 4LFAI 4KHPI 4LF7I 4FWDA 5K36C 2GO4A 3J80C 1I94E 3U1YA 5LMUE 2IOPA 4BA1A 4OO1E 1E3PA 3P76A 3PYFA 4NXNI 3J7AM 4IZKA 4K0KE 1ZM9A 5GMEA 2O1TA 2C39A 4YHHI 4DV2E 2WNRA 2ZM6I 1P42A 2ZITA 2UXBI 2NN6B 2A2DA 4FW9A 3Q6NA 4LCHA 4KHPE 4DV4I 4BA2A 4AIMA 1USVA 4JI4E 3LNUA 1Z59A 1J5EE 4JI7E 3QT6A 1HNWI 2CZ9A 4JI3E 1IBMI 4DUYE 4WUCA 1N33I 4YHHE 2JEAB 1Y60A 4DR4E 1OYRA 1FJGI 4DV1E 3WU6A 4DPUA 2UXBE 1FNMA 4JI6I 1B63A 4DV4E 4MU4A 1PKPA 1R6LA 2BA0G 2HKJA 2UXDI 4DR6E 4FN5A 1H7SA 2V34A 5K36A 4HXZA 2CG9A 4B3MI 2BR2B 5JEAF 4FW4A 5C0XC 1UDSA 2PNMA 1N33E 4IZJB 4GKKI 2JEBB 2IERA 4LFCI 5L3JA 1WUUA 5JEAD 2PO2B 3P3GA 4JI6E 3PS1A 3B8HA 2V2QA 4OO1F 4LFBI 1XMOI 1FWKA 3V2UC 1PIEA 4X65E 2HFUA 3M7NG 4LCGA 4P52A 4OO1D 3K1JA 1E3HA 4GKKE 5DROA 1ZM2A 3M85G 4HY1A 4LFCE 5IT9C 4YY3E 2V2ZA 4BA1B 1NHJA 4IZKB 4N3OA 2C39B 2WNRB 2C37B 4PRVA 1XMOE 1BKNA 4B3RI 2JT2A 4DV3I 1FI4A 4JI0I 3P06A 4BA2B 2HK2A 3DD6A 1VI7A 3Q6MA 1HR0I 4KQVA 2J7KA 1ELOA 1NZ0A 4IFDF 1HNZE 1IBKI 2J65A 4NXME 2Z5BA 1N0UA 4DR7E 1KIJA 2VESA 5ELWA 4B3SI 4DV5I 3T1YI 5BR8I 4B3RE 4X62I 4LF9E 1XMQI 4MU0A 3D4JA 4IFDD 1N32I 2F4VE 1XXEA 4JI0E 1N36I 2DEIA 4U3DA 4AIDA 2NN6E 2E5LE 1YHCA 4GKJI 2PNZA 1KVKA 4DR3I 1HR0E 4LF4I 5K36B 1MX0A 2DEJA 1IBKE 3B78A 4X64I 3K17A 2BA1G 3HJCA 3P3EA 4DV5E 3T1YE 4DUZI 4MU3A 2EFGA 3GCMA 4X62E 4Z7YA 4EMDA 1Z0VA 4DPYA 1N36E 4U3BA 3OTOI 1H74A 2X7IA 3T1HE 4B3TE 1OYPA 4IS9A 1B62A 1Z0WA 4DPTA 1KTVA 4RPFA 4USKA 3J80Q 1RREA
chains in the Genus database with same CATH topology
1YHCA 4LCHA 4ISAA 4FW6A 4FW5A 4LCGA 4FW4A 4FW3A 4OKGA 5DROA 1YH8A 3P3EA 2GO4A 2GO3A 2J65A 2IESA 3U1YA 4MQYA 3NZKA 3PS3A 3PS2A 2IERA 2VESA 4MDTA 4FW7A 5DRPA 3P76A 3P3GA 4J3DA 3PS1A 4U3BA 2O3ZA 5DRQA 3UHMA 4OZEA 1XXEA 1P42A 4IS9A 2JT2A 5DRRA 4LCFA 4U3DA 3P3CA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1YHC A;  4LCH A;  4ISA A;  4FW6 A;  4FW5 A;  4LCG A;  4FW4 A;  4FW3 A;  4OKG A;  5DRO A;  1YH8 A;  3P3E A;  2GO4 A;  2GO3 A;  2J65 A;  2IES A;  3U1Y A;  4MQY A;  3NZK A;  3PS3 A;  3PS2 A;  2IER A;  2VES A;  4MDT A;  4FW7 A;  5DRP A;  3P76 A;  3P3G A;  4J3D A;  3PS1 A;  4U3B A;  2O3Z A;  5DRQ A;  3UHM A;  4OZE A;  1XXE A;  1P42 A;  4IS9 A;  2JT2 A;  5DRR A;  4LCF A;  4U3D A;  3P3C A; 
#chains in the Genus database with same CATH topology
 3L7Z A;  4FW5 A;  4LFA E;  4URL A;  2Q2E B;  4LF7 E;  4HAC A;  4JV5 I;  2C38 A;  3M6A A;  3KRN A;  1NHH A;  2A2C A;  4NXN E;  3WU4 A;  3ZM7 A;  2HFS A;  5EKW A;  2AJ4 A;  1Y4S A;  2OI2 A;  2VF3 A;  1FKA E;  4AM3 A;  1K47 A;  2ZM6 E;  4QNK A;  2UUC I;  2BA0 D;  1QZR A;  3V5R A;  4MYU A;  1S16 A;  5C0X B;  4JV5 E;  5LMN I;  3LPS A;  2NN6 F;  5JEA C;  4IFD E;  1HNW E;  2Z5C A;  5EL9 A;  4FW3 A;  4DV6 I;  1Y5Y A;  1IBM E;  1OYS A;  2WP8 A;  3PS3 A;  1FJG E;  2HKE A;  2NN6 D;  2UUC E;  2XEX A;  2UXC I;  4WUB A;  4OX9 I;  1S4E A;  4OO1 C;  4GQU A;  2AE8 A;  2V2V A;  4JYA I;  5FWK A;  1Y4U A;  2PNZ B;  1HNX I;  2UXD E;  4AQY I;  5FLX C;  1Y6Z A;  2CGE A;  4B3M E;  3M85 D;  1EI1 A;  3CDI A;  1NHI A;  1Z0E A;  2LJP A;  2UXC E;  4OX9 E;  2R3V A;  3QT8 A;  5DNL A;  2V8P A;  4JI1 I;  2VQE I;  4JYA E;  4LFB E;  4AQY E;  4LF6 I;  5IT9 Q;  3L7Z B;  5JEA A;  4FW6 A;  4IZJ D;  1PVG A;  2O1V A;  5K36 E;  1XNR I;  4HAC B;  5A2Q C;  1XNQ I;  4LF5 I;  2Z5E A;  4R1F A;  1R6M A;  5IWA I;  4IFD C;  1Z0B A;  1USU A;  4XTJ A;  1H73 A;  4JI1 E;  4HYM A;  2UUA I;  4UTG A;  3J81 C;  4OO1 A;  4DV0 I;  2JEA A;  3PYD A;  3UHM A;  4OZE A;  4JI5 I;  3H1C A;  1ZM4 A;  1RHY A;  3PRY A;  2ZBK B;  3QT5 A;  4DV3 E;  3JAM C;  2VQF I;  1Z0G A;  2PO0 A;  1XNR E;  1UDN A;  4ZVI A;  1H7U A;  2BA1 D;  1U2R A;  2Z5C B;  1XHK A;  2BM1 A;  1N34 I;  2BR2 A;  4LF8 I;  4DU7 A;  2WP8 B;  3GLL A;  3QT7 A;  3ZZU A;  4B3S E;  4WUD A;  4MQY A;  3ZKB A;  5BR8 E;  1I94 I;  1XMQ E;  4QNJ A;  2HHH I;  5DRP A;  1EA6 A;  1N32 E;  2PO2 A;  5DRQ A;  1ZM3 A;  1KKH A;  4LOM A;  4K0K I;  4NBQ A;  3CWV A;  4DV2 I;  4GKJ E;  4DR3 E;  4LF4 E;  3PYG A;  5C0X E;  4DXL A;  1N34 E;  4MYT A;  4LF8 E;  2JE6 A;  4IFD A;  3HKM A;  4X64 E;  4DU8 A;  4JI4 I;  2F1D A;  1J5E I;  4OKG A;  3U1K A;  4DUZ E;  5K36 F;  4JI7 I;  5DNX A;  2IES A;  3K85 A;  2HHH E;  4JI3 I;  3PS2 A;  3WU5 A;  2UUB I;  1A6F A;  4DV7 I;  4DUY I;  2O1U A;  3OTO E;  4J3D A;  3H4L A;  4DR4 I;  2C37 A;  4DV1 I;  5K36 D;  4I3H A;  4DR1 I;  4PRX A;  4JI8 I;  4MU1 A;  5JEA B;  1MU5 A;  1VIS A;  4DPX A;  2NN6 C;  4DR6 I;  2PO1 A;  1YH8 A;  1ZXM A;  4FWG A;  5GMD A;  4DV7 E;  1OJ4 A;  1HK7 A;  2UUB E;  2Z5B B;  5LL6 R;  4USM A;  4OO1 B;  3WU3 A;  1IBL I;  4DR1 E;  4JI2 I;  3GME A;  2UU9 I;  4JI8 E;  2GS8 A;  2O3Z A;  1MG7 A;  1N0V C;  4FWH A;  5DRR A;  3HUL A;  4DR5 I;  2PO0 B;  4LCF A;  3M7N D;  2NPF A;  3Q1Q A;  3F0N A;  5LMN E;  4X65 I;  1FWL A;  2E1R A;  3CDJ A;  4DV6 E;  2GQ0 A;  4LPF A;  5C0X F;  1UDQ A;  1Z0T A;  1IBL E;  3NZK A;  2BV3 A;  4YY3 I;  4JI2 E;  2UU9 E;  1Z5A A;  5FLX Q;  4ED4 A;  2R42 A;  4PU9 A;  5C0X D;  2HK3 A;  4DR5 E;  1HNX E;  3P3C A;  2IOQ A;  4DPW A;  2NN6 A;  4ISA A;  4UT4 A;  2JE6 B;  4IFD B;  4DR2 I;  1Z5C A;  4JG4 A;  2WW4 A;  2C38 B;  2GO3 A;  3ZKD A;  3ZZ0 A;  1HNZ I;  4NXM I;  1D6T A;  4MDT A;  2VQE E;  4DR7 I;  2BM0 A;  1ZXN A;  3B82 A;  5A2Q Q;  3LTO A;  2O1W A;  4LF6 E;  4LF9 I;  2CVE A;  2F4V I;  1UDO A;  4DR2 E;  5C0X A;  1XNQ E;  4LF5 E;  3J81 Q;  2E5L I;  1DAR A;  4X66 I;  2PO1 B;  3PYE A;  5IWA E;  3ZZT A;  2PNL A;  3JAM Q;  2UUA E;  1H72 C;  4IZJ A;  4DV0 E;  3GON A;  2JEB A;  3B4T A;  4FW7 A;  5LMU I;  4JI5 E;  2X36 A;  2VQF E;  4M1K A;  1Z5B A;  3T1H I;  4B3T I;  1UEK A;  1RR9 A;  4P7A A;  4X66 E;  5JEA E;  1Z0C A;  4Z7C A;  3J7A G;  4LFA I;  4KHP I;  4LF7 I;  4FWD A;  5K36 C;  2GO4 A;  3J80 C;  1I94 E;  3U1Y A;  5LMU E;  2IOP A;  4BA1 A;  4OO1 E;  1E3P A;  3P76 A;  3PYF A;  4NXN I;  3J7A M;  4IZK A;  4K0K E;  1ZM9 A;  5GME A;  2O1T A;  2C39 A;  4YHH I;  4DV2 E;  2WNR A;  2ZM6 I;  1P42 A;  2ZIT A;  2UXB I;  2NN6 B;  2A2D A;  4FW9 A;  3Q6N A;  4LCH A;  4KHP E;  4DV4 I;  4BA2 A;  4AIM A;  1USV A;  4JI4 E;  3LNU A;  1Z59 A;  1J5E E;  4JI7 E;  3QT6 A;  1HNW I;  2CZ9 A;  4JI3 E;  1IBM I;  4DUY E;  4WUC A;  1N33 I;  4YHH E;  2JEA B;  1Y60 A;  4DR4 E;  1OYR A;  1FJG I;  4DV1 E;  3WU6 A;  4DPU A;  2UXB E;  1FNM A;  4JI6 I;  1B63 A;  4DV4 E;  4MU4 A;  1PKP A;  1R6L A;  2BA0 G;  2HKJ A;  2UXD I;  4DR6 E;  4FN5 A;  1H7S A;  2V34 A;  5K36 A;  4HXZ A;  2CG9 A;  4B3M I;  2BR2 B;  5JEA F;  4FW4 A;  5C0X C;  1UDS A;  2PNM A;  1N33 E;  4IZJ B;  4GKK I;  2JEB B;  2IER A;  4LFC I;  5L3J A;  1WUU A;  5JEA D;  2PO2 B;  3P3G A;  4JI6 E;  3PS1 A;  3B8H A;  2V2Q A;  4OO1 F;  4LFB I;  1XMO I;  1FWK A;  3V2U C;  1PIE A;  4X65 E;  2HFU A;  3M7N G;  4LCG A;  4P52 A;  4OO1 D;  3K1J A;  1E3H A;  4GKK E;  5DRO A;  1ZM2 A;  3M85 G;  4HY1 A;  4LFC E;  5IT9 C;  4YY3 E;  2V2Z A;  4BA1 B;  1NHJ A;  4IZK B;  4N3O A;  2C39 B;  2WNR B;  2C37 B;  4PRV A;  1XMO E;  1BKN A;  4B3R I;  2JT2 A;  4DV3 I;  1FI4 A;  4JI0 I;  3P06 A;  4BA2 B;  2HK2 A;  3DD6 A;  1VI7 A;  3Q6M A;  1HR0 I;  4KQV A;  2J7K A;  1ELO A;  1NZ0 A;  4IFD F;  1HNZ E;  1IBK I;  2J65 A;  4NXM E;  2Z5B A;  1N0U A;  4DR7 E;  1KIJ A;  2VES A;  5ELW A;  4B3S I;  4DV5 I;  3T1Y I;  5BR8 I;  4B3R E;  4X62 I;  4LF9 E;  1XMQ I;  4MU0 A;  3D4J A;  4IFD D;  1N32 I;  2F4V E;  1XXE A;  4JI0 E;  1N36 I;  2DEI A;  4U3D A;  4AID A;  2NN6 E;  2E5L E;  1YHC A;  4GKJ I;  2PNZ A;  1KVK A;  4DR3 I;  1HR0 E;  4LF4 I;  5K36 B;  1MX0 A;  2DEJ A;  1IBK E;  3B78 A;  4X64 I;  3K17 A;  2BA1 G;  3HJC A;  3P3E A;  4DV5 E;  3T1Y E;  4DUZ I;  4MU3 A;  2EFG A;  3GCM A;  4X62 E;  4Z7Y A;  4EMD A;  1Z0V A;  4DPY A;  1N36 E;  4U3B A;  3OTO I;  1H74 A;  2X7I A;  3T1H E;  4B3T E;  1OYP A;  4IS9 A;  1B62 A;  1Z0W A;  4DPT A;  1KTV A;  4RPF A;  4USK A;  3J80 Q;  1RRE A; 
#chains in the Genus database with same CATH homology
 1YHC A;  4LCH A;  4ISA A;  4FW6 A;  4FW5 A;  4LCG A;  4FW4 A;  4FW3 A;  4OKG A;  5DRO A;  1YH8 A;  3P3E A;  2GO4 A;  2GO3 A;  2J65 A;  2IES A;  3U1Y A;  4MQY A;  3NZK A;  3PS3 A;  3PS2 A;  2IER A;  2VES A;  4MDT A;  4FW7 A;  5DRP A;  3P76 A;  3P3G A;  4J3D A;  3PS1 A;  4U3B A;  2O3Z A;  5DRQ A;  3UHM A;  4OZE A;  1XXE A;  1P42 A;  4IS9 A;  2JT2 A;  5DRR A;  4LCF A;  4U3D A;  3P3C A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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