3U2GA

Crystal structure of the c-terminal duf1608 domain of the methanosarcina acetivorans s-layer (ma0829) protein
Total Genus 53
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
274
structure length
274
Chain Sequence
TYEIRGQVASGFGDQSWDASSFAGFYYDIDDNVSTETLTVSDLDGNVIPEGGLVYTTTIADVDFEYYNPDAGWDQYPVMGFFAEEYIPINPDKADKIAKLVLDSDDKYTIRTGEMLDLGEGYAIEAKQVDVDGEKVWLEFTKDGEFVDDEIISVSTADDEANTWDVELDDIEDEDDVVVLKVHVNQVFQGAVDSIAQIEGLWLIDYANAMTIESDDEFGNLDDVSIDGDTLKISNEDTFTLTRDSEEEIGEGMYFMIADTSSSDLRYYPYVEKT
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural protein
molecule keywords S-layer protein MA0829
publication title Structure of the surface layer of the methanogenic archaean Methanosarcina acetivorans.
pubmed doi rcsb
source organism Methanosarcina acetivorans
total genus 53
structure length 274
sequence length 274
ec nomenclature
pdb deposition date 2011-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07752 S-layer S-layer protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.98.40 Mainly Beta Sandwich Tick-borne Encephalitis virus Glycoprotein; domain 1 Tick-borne Encephalitis virus Glycoprotein; domain 1 3u2gA02
3.30.1830.20 Alpha Beta 2-Layer Sandwich YehR-like fold YehR-like fold 3u2gA01
3U2GA 3U2HA
chains in the Genus database with same CATH superfamily
2ALAA 3J2PA 4HJ1A 5IZ7A 5JHMA 3I50E 4ADIA 1UZGA 1RERA 4UTAA 5LBVA 1TG8A 4ADJA 4UTBA 3G7TA 3N40F 4UTCA 4UT9A 2HG0A 4OJEH 4GT0A 3N42F 4OJCA 3N43F 3UAJA 4ADGA 3N41F 5LCVA 3UC0A 5IREA 5LBSA 3N44F 1OK8A 2JOEA 5GZOA 3C6EA 1OKEA 3P54A 1WLGA 5H37A 4UT6A 4GSXA 3J27A 5JHLA 4FG0A 1SVBA 3C5XA 1URZA 4OJDH 3U2HA 2I69A 3U2GA 5GZNA 4B3VA 1OANA
chains in the Genus database with same CATH topology
4OJDH 4OJCA 4HJ1A 4ADIA 4ADGA 3U2HA 4ADJA 3U2GA 4B3VA 4OJEH
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U2G A;  3U2H A; 
#chains in the Genus database with same CATH topology
 2ALA A;  3J2P A;  4HJ1 A;  5IZ7 A;  5JHM A;  3I50 E;  4ADI A;  1UZG A;  1RER A;  4UTA A;  5LBV A;  1TG8 A;  4ADJ A;  4UTB A;  3G7T A;  3N40 F;  4UTC A;  4UT9 A;  2HG0 A;  4OJE H;  4GT0 A;  3N42 F;  4OJC A;  3N43 F;  3UAJ A;  4ADG A;  3N41 F;  5LCV A;  3UC0 A;  5IRE A;  5LBS A;  3N44 F;  1OK8 A;  2JOE A;  5GZO A;  3C6E A;  1OKE A;  3P54 A;  1WLG A;  5H37 A;  4UT6 A;  4GSX A;  3J27 A;  5JHL A;  4FG0 A;  1SVB A;  3C5X A;  1URZ A;  4OJD H;  3U2H A;  2I69 A;  3U2G A;  5GZN A;  4B3V A;  1OAN A; 
#chains in the Genus database with same CATH homology
 4OJD H;  4OJC A;  4HJ1 A;  4ADI A;  4ADG A;  3U2H A;  4ADJ A;  3U2G A;  4B3V A;  4OJE H; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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