3U2HA

Crystal structure of the c-terminal duf1608 domain of the methanosarcina acetivorans s-layer (ma0829) protein
Total Genus 48
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
48
sequence length
270
structure length
256
Chain Sequence
EIRGQVASGFGDQSWDASSFAGFYYDIDDNVSTETLTVSDLDGNVIPEGGLVYTTTIADVDFEYYNPDAGWDQYPVMGFFAEEYIPINPDKADKIAKLVLDSDDKYTIRTGEMLDLGEGYAIEAKQVDVDGEKVWLEFTKDGEFVDDEIINTWDVELDDIEDEDDVVVLKVHVNQVFQIAQIEGLWLIDYANAMTIESDDEFGNLDDVSIDGDTLKISNEDTFTLTRDSEEEIGEGMYFMIADTSSSDLRYYPYVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Structural protein
molecule keywords S-layer protein MA0829
publication title Structure of the surface layer of the methanogenic archaean Methanosarcina acetivorans.
pubmed doi rcsb
source organism Methanosarcina acetivorans
total genus 48
structure length 256
sequence length 270
ec nomenclature
pdb deposition date 2011-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07752 S-layer S-layer protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.98.40 Mainly Beta Sandwich Tick-borne Encephalitis virus Glycoprotein; domain 1 Tick-borne Encephalitis virus Glycoprotein; domain 1 3u2hA02
3.30.1830.20 Alpha Beta 2-Layer Sandwich YehR-like fold YehR-like fold 3u2hA01
3U2HA 3U2GA
chains in the Genus database with same CATH superfamily
3J2PA 1WLGA 5JHLA 2I69A 1RERA 4GT0A 4B3VA 4OJCA 3N40F 4OJDH 1OKEA 4ADIA 2HG0A 4UTAA 5GZNA 5JHMA 5LCVA 4HJ1A 4OJEH 5GZOA 3C5XA 5H37A 5IZ7A 5IREA 4FG0A 5LBVA 3UC0A 4ADGA 4UT6A 3N41F 5LBSA 3UAJA 4GSXA 1OANA 3N44F 3I50E 1UZGA 4UT9A 3U2GA 3C6EA 1URZA 2JOEA 3J27A 4UTBA 4ADJA 1OK8A 3N42F 3G7TA 3P54A 1SVBA 4UTCA 2ALAA 3N43F 3U2HA 1TG8A
chains in the Genus database with same CATH topology
4ADJA 4OJDH 4HJ1A 4OJEH 3U2GA 4B3VA 4OJCA 3U2HA 4ADIA 4ADGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U2H A;  3U2G A; 
#chains in the Genus database with same CATH topology
 3J2P A;  1WLG A;  5JHL A;  2I69 A;  1RER A;  4GT0 A;  4B3V A;  4OJC A;  3N40 F;  4OJD H;  1OKE A;  4ADI A;  2HG0 A;  4UTA A;  5GZN A;  5JHM A;  5LCV A;  4HJ1 A;  4OJE H;  5GZO A;  3C5X A;  5H37 A;  5IZ7 A;  5IRE A;  4FG0 A;  5LBV A;  3UC0 A;  4ADG A;  4UT6 A;  3N41 F;  5LBS A;  3UAJ A;  4GSX A;  1OAN A;  3N44 F;  3I50 E;  1UZG A;  4UT9 A;  3U2G A;  3C6E A;  1URZ A;  2JOE A;  3J27 A;  4UTB A;  4ADJ A;  1OK8 A;  3N42 F;  3G7T A;  3P54 A;  1SVB A;  4UTC A;  2ALA A;  3N43 F;  3U2H A;  1TG8 A; 
#chains in the Genus database with same CATH homology
 4ADJ A;  4OJD H;  4HJ1 A;  4OJE H;  3U2G A;  4B3V A;  4OJC A;  3U2H A;  4ADI A;  4ADG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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