3U3PA

The s-sad phased crystal structure of the ecto-domain of death receptor 6 (dr6)
Total Genus 27
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
27
sequence length
164
structure length
164
Chain Sequence
IGTYRHVDRATGQVLTCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENGIEKCHDCSQPCPWPMIEKLPCAALTDRECTCPPGMFQSNATCAPHTVCPVGWGVRKKGTETEDVRCKQCARGTFSDVPSSVMKCKAYTDCLSQNLVVIKPGTKETDNVCGTL
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Apoptosis
molecule keywords Tumor necrosis factor receptor superfamily member 21
publication title S-SAD phasing study of death receptor 6 and its solution conformation revealed by SAXS
pubmed doi rcsb
source organism Homo sapiens
total genus 27
structure length 164
sequence length 164
ec nomenclature
pdb deposition date 2011-10-06

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00020 TNFR_c6 TNFR/NGFR cysteine-rich region
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3u3pA02
2.10.50.10 Mainly Beta Ribbon Tumor Necrosis Factor Receptor, subunit A; domain 2 Tumor Necrosis Factor Receptor, subunit A, domain 2 3u3pA01
4RSUD 4M4PA 4MSVB 5CIRE 5IHLA 4KGQC 1FT4A 3ME4A 4M4RA 3QO4A 3MBWA 1D0GR 4BK4A 4MXWR 1D4VA 1TNRR 4GIQR 4E4DR 3ME2R 1DU3A 1NCFA 4N90R 5BNQR 3ALQR 3IJ2X 3MHDD 1ZA3R 2H9GR 3WVTA 4YN0A 3U3PA 4KGGC 3QBQB 4J6GC 2UWIA 3TJEF 3X3FA 3U3VA 1JMAB 5L36B 2HEVR 4FHQA 5DMJA 4BK5A 1SG1X 2HEYR 3U3SA 3FL7A 3K51B 2AW2B 3BUKC 3THMF 4I9XC 3U3TA 3U3QA 2X10A 3QD6R 1EXTA 4OD2S 3MI8D 3URFZ
chains in the Genus database with same CATH superfamily
4RSUD 4M4PA 4MSVB 5CIRE 2E4XA 2E4WA 5IHLA 4KGQC 1FT4A 3ME4A 4M4RA 3QO4A 3MBWA 1D0GR 4BK4A 2E4YA 4MXWR 1D4VA 1TNRR 4GIQR 4E4DR 3ME2R 1DU3A 1NCFA 4N90R 5BNQR 3ALQR 3IJ2X 3MHDD 1ZA3R 2H9GR 2E4UA 3WVTA 4YN0A 3U3PA 4KGGC 3QBQB 4J6GC 2E4VA 2UWIA 3TJEF 3U3VA 1JMAB 3X3FA 2HEVR 4FHQA 2QR6A 5DMJA 5L36B 4BK5A 1SG1X 2HEYR 3U3SA 3FL7A 3K51B 2AW2B 3BUKC 3THMF 4I9XC 3U3TA 3U3QA 2X10A 3QD6R 1EXTA 4OD2S 3MI8D 3URFZ
chains in the Genus database with same CATH topology
4RSUD 4M4PA 4MSVB 5CIRE 5IHLA 4KGQC 1FT4A 3ME4A 4M4RA 3QO4A 3MBWA 1D0GR 4BK4A 4MXWR 1D4VA 1TNRR 4GIQR 4E4DR 3ME2R 1DU3A 1NCFA 4N90R 5BNQR 3ALQR 3IJ2X 3MHDD 1ZA3R 2H9GR 3WVTA 4YN0A 3U3PA 4KGGC 3QBQB 4J6GC 2UWIA 3TJEF 3X3FA 3U3VA 1JMAB 5L36B 2HEVR 4FHQA 5DMJA 4BK5A 1SG1X 2HEYR 3U3SA 3FL7A 3K51B 2AW2B 3BUKC 3THMF 4I9XC 3U3TA 3U3QA 2X10A 3QD6R 1EXTA 4OD2S 3MI8D 3URFZ
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4RSU D;  4M4P A;  4MSV B;  5CIR E;  5IHL A;  4KGQ C;  1FT4 A;  3ME4 A;  4M4R A;  3QO4 A;  3MBW A;  1D0G R;  4BK4 A;  4MXW R;  1D4V A;  1TNR R;  4GIQ R;  4E4D R;  3ME2 R;  1DU3 A;  1NCF A;  4N90 R;  5BNQ R;  3ALQ R;  3IJ2 X;  3MHD D;  1ZA3 R;  2H9G R;  3WVT A;  4YN0 A;  3U3P A;  4KGG C;  3QBQ B;  4J6G C;  2UWI A;  3TJE F;  3X3F A;  3U3V A;  1JMA B;  5L36 B;  2HEV R;  4FHQ A;  5DMJ A;  4BK5 A;  1SG1 X;  2HEY R;  3U3S A;  3FL7 A;  3K51 B;  2AW2 B;  3BUK C;  3THM F;  4I9X C;  3U3T A;  3U3Q A;  2X10 A;  3QD6 R;  1EXT A;  4OD2 S;  3MI8 D;  3URF Z; 
#chains in the Genus database with same CATH topology
 4RSU D;  4M4P A;  4MSV B;  5CIR E;  2E4X A;  2E4W A;  5IHL A;  4KGQ C;  1FT4 A;  3ME4 A;  4M4R A;  3QO4 A;  3MBW A;  1D0G R;  4BK4 A;  2E4Y A;  4MXW R;  1D4V A;  1TNR R;  4GIQ R;  4E4D R;  3ME2 R;  1DU3 A;  1NCF A;  4N90 R;  5BNQ R;  3ALQ R;  3IJ2 X;  3MHD D;  1ZA3 R;  2H9G R;  2E4U A;  3WVT A;  4YN0 A;  3U3P A;  4KGG C;  3QBQ B;  4J6G C;  2E4V A;  2UWI A;  3TJE F;  3U3V A;  1JMA B;  3X3F A;  2HEV R;  4FHQ A;  2QR6 A;  5DMJ A;  5L36 B;  4BK5 A;  1SG1 X;  2HEY R;  3U3S A;  3FL7 A;  3K51 B;  2AW2 B;  3BUK C;  3THM F;  4I9X C;  3U3T A;  3U3Q A;  2X10 A;  3QD6 R;  1EXT A;  4OD2 S;  3MI8 D;  3URF Z; 
#chains in the Genus database with same CATH homology
 4RSU D;  4M4P A;  4MSV B;  5CIR E;  5IHL A;  4KGQ C;  1FT4 A;  3ME4 A;  4M4R A;  3QO4 A;  3MBW A;  1D0G R;  4BK4 A;  4MXW R;  1D4V A;  1TNR R;  4GIQ R;  4E4D R;  3ME2 R;  1DU3 A;  1NCF A;  4N90 R;  5BNQ R;  3ALQ R;  3IJ2 X;  3MHD D;  1ZA3 R;  2H9G R;  3WVT A;  4YN0 A;  3U3P A;  4KGG C;  3QBQ B;  4J6G C;  2UWI A;  3TJE F;  3X3F A;  3U3V A;  1JMA B;  5L36 B;  2HEV R;  4FHQ A;  5DMJ A;  4BK5 A;  1SG1 X;  2HEY R;  3U3S A;  3FL7 A;  3K51 B;  2AW2 B;  3BUK C;  3THM F;  4I9X C;  3U3T A;  3U3Q A;  2X10 A;  3QD6 R;  1EXT A;  4OD2 S;  3MI8 D;  3URF Z; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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