3U73U

Crystal structure of stabilized human upar mutant in complex with atf
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
280
structure length
269
Chain Sequence
LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTCSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWIQEGEEGRPKDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMCHIDVSCCTKSGCNHPDLDVQY
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase/hydrolase receptor
molecule keywords Urokinase plasminogen activator surface receptor
publication title Crystal structure of the urokinase receptor in a ligand-free form.
pubmed doi rcsb
source organism Homo sapiens
total genus 59
structure length 269
sequence length 280
ec nomenclature
pdb deposition date 2011-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3u73U01
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3u73U03
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3u73U02
1CXOA 2MJYA 1FASA 1IK8A 1V6PA 2H7ZB 3BT2U 2BHIA 4FAOE 1QM7A 2CTXA 3NDSA 1LSIA 3HH7A 1ERAA 2PJYB 1B41B 3KFDE 2I9BE 2L5SA 1MAHF 2H64C 3PLCA 1JE9A 1KU6B 1FSCA 1PLOA 1NXBA 4BIKB 1IKCA 4ZQYA 4IYEA 3FEVA 5IMYC 3EBXA 1HC9A 2HLRA 1TFSA 4HQPF 4EY8B 1UG4A 1REWC 1MR6A 1ES7B 3VTSA 1KC4A 2PJYC 2VLWA 2CRTA 3BT1U 4P7UA 1IDLA 2BTXA 4XJJA 1JBDA 1NTNA 1CCQA 4BDTB 1CREA 2LA1A 4OM4A 1LXHA 1LJZA 1TGXA 1CTXA 2CDXA 2ABXA 1COEA 2H62D 1F94A 1CB9A 2JVEA 2MJ0A 1LX5B 2QJBC 1ZADA 3U73U 5DO6A 1ONJA 2FD6U 1KXIA 1RGJA 5IMTD 1IJCA 1KBTA 4FAOC 3EVSC 2GOOB 1F8UB 2J8BA 1LXGA 1TXBA 1KBAA 2MUPA 1NYUA 1G6MA 1I02A 2H8UA 2QC1A 2N99A 1KTZB 1FRAA 1KS6A 2UX2A 4RUDA 4AEAA 1FSSB 1CDTA 5EBXA 4UY2C 2MUOA 2CCXA 1H0JA 1YWHA 1CVOA 1QKEA 2MJ4A 1CRFA 1DRSA 2H5FA 1FFJA 1FF4A 2CRSA 1L4WA 2H64B 1BXPA 4OM5A 3NEQA 1VB0A 2H7ZA 2LCRA 3LAQU 2ERAA 1IDGA 1HOYA 2JQPA 1JGKA 6EBXA 3ERAA 1HC9B 1HAAA 1CDSA 1BTEA 1KFHA 1NORA 1CDQA 2HLQA 2QJAC 1XT3A 3U74U 1ERGA 2MHYA 1NEAA 4LFTA 3KFDI 1IQ9A 2OFSA 1CHVS 1S4YA 1HAJA 2GOOC 1TXAA 1KL8A 1W6BA 1ABTA 1IDIA 2QJ9C 2UWRA 2MFAA 1NTXA 1CXNA 2X8BB 1QKDA 1CODA 4DO8A 1CDRA 1RL5A 1IDHA 2H62C 2L03A 1NYSA 2NBTA 3NH7A 2K3GA 3QB4B 4QTIU 1KBSA 5DU1A 1M9ZA 5DZ5A
chains in the Genus database with same CATH superfamily
1CXOA 2MJYA 1FASA 1IK8A 1V6PA 2H7ZB 3BT2U 2BHIA 4FAOE 1QM7A 2CTXA 3NDSA 1LSIA 3HH7A 1ERAA 2PJYB 1B41B 3KFDE 2I9BE 2L5SA 1MAHF 2H64C 3PLCA 1JE9A 1KU6B 1FSCA 1PLOA 1NXBA 4BIKB 1IKCA 4ZQYA 4IYEA 3FEVA 5IMYC 3EBXA 1HC9A 2HLRA 1TFSA 4HQPF 4EY8B 1UG4A 1REWC 1MR6A 1ES7B 3VTSA 1KC4A 2PJYC 2VLWA 2CRTA 3BT1U 4P7UA 1IDLA 2BTXA 4XJJA 1JBDA 1NTNA 1CCQA 4BDTB 1CREA 2LA1A 4OM4A 1LXHA 1LJZA 1TGXA 1CTXA 2CDXA 2ABXA 1COEA 2H62D 1F94A 1CB9A 2JVEA 4KSNA 2MJ0A 1LX5B 2QJBC 1ZADA 3U73U 5DO6A 1ONJA 2FD6U 1KXIA 1RGJA 5IMTD 1IJCA 1KBTA 4FAOC 3EVSC 2GOOB 1F8UB 2J8BA 1LXGA 1TXBA 1KBAA 2MUPA 1NYUA 1G6MA 1I02A 2H8UA 2QC1A 2N99A 1KTZB 1FRAA 1KS6A 2UX2A 4RUDA 4AEAA 1FSSB 1CDTA 5EBXA 4UY2C 2MUOA 2CCXA 1H0JA 1YWHA 1CVOA 1QKEA 2MJ4A 1CRFA 1DRSA 2H5FA 1FFJA 1FF4A 2CRSA 1L4WA 2H64B 1BXPA 4OM5A 3NEQA 1VB0A 2H7ZA 2LCRA 3LAQU 2ERAA 1IDGA 1HOYA 2JQPA 1JGKA 6EBXA 3ERAA 1HC9B 1HAAA 1CDSA 1BTEA 1KFHA 1NORA 1CDQA 2HLQA 2QJAC 1XT3A 3U74U 1ERGA 2MHYA 1NEAA 4LFTA 3KFDI 1IQ9A 2OFSA 1CHVS 1S4YA 1HAJA 2GOOC 1TXAA 1KL8A 1W6BA 1ABTA 1IDIA 2QJ9C 2UWRA 2MFAA 1NTXA 1CXNA 2X8BB 1QKDA 1CODA 4DO8A 1CDRA 1RL5A 1IDHA 2H62C 2L03A 1NYSA 2NBTA 3NH7A 2K3GA 3QB4B 4QTIU 1KBSA 5DU1A 1M9ZA 5DZ5A
chains in the Genus database with same CATH topology
1CXOA 2MJYA 1FASA 1IK8A 1V6PA 2H7ZB 3BT2U 2BHIA 4FAOE 1QM7A 2CTXA 3NDSA 1LSIA 3HH7A 1ERAA 2PJYB 1B41B 3KFDE 2I9BE 2L5SA 1MAHF 2H64C 3PLCA 1JE9A 1KU6B 1FSCA 1PLOA 1NXBA 4BIKB 1IKCA 4ZQYA 4IYEA 3FEVA 5IMYC 3EBXA 1HC9A 2HLRA 1TFSA 4HQPF 4EY8B 1UG4A 1REWC 1MR6A 1ES7B 3VTSA 1KC4A 2PJYC 2VLWA 2CRTA 3BT1U 4P7UA 1IDLA 2BTXA 4XJJA 1JBDA 1NTNA 1CCQA 4BDTB 1CREA 2LA1A 4OM4A 1LXHA 1LJZA 1TGXA 1CTXA 2CDXA 2ABXA 1COEA 2H62D 1F94A 1CB9A 2JVEA 4KSNA 2MJ0A 1LX5B 2QJBC 1ZADA 3U73U 5DO6A 1ONJA 2FD6U 1KXIA 1RGJA 5IMTD 1IJCA 1KBTA 4FAOC 3EVSC 2GOOB 1F8UB 2J8BA 1LXGA 1TXBA 1KBAA 2MUPA 1NYUA 1G6MA 1I02A 2H8UA 2QC1A 2N99A 1KTZB 1FRAA 1KS6A 2UX2A 4RUDA 4AEAA 1FSSB 1CDTA 5EBXA 4UY2C 2MUOA 2CCXA 1H0JA 1YWHA 1CVOA 1QKEA 2MJ4A 1CRFA 1DRSA 2H5FA 1FFJA 1FF4A 2CRSA 1L4WA 2H64B 1BXPA 4OM5A 3NEQA 1VB0A 2H7ZA 2LCRA 3LAQU 2ERAA 1IDGA 1HOYA 2JQPA 1JGKA 6EBXA 3ERAA 1HC9B 1HAAA 1CDSA 1BTEA 1KFHA 1NORA 1CDQA 2HLQA 2QJAC 1XT3A 3U74U 1ERGA 2MHYA 1NEAA 4LFTA 3KFDI 1IQ9A 2OFSA 1CHVS 1S4YA 1HAJA 2GOOC 1TXAA 1KL8A 1W6BA 1ABTA 1IDIA 2QJ9C 2UWRA 2MFAA 1NTXA 1CXNA 2X8BB 1QKDA 1CODA 4DO8A 1CDRA 1RL5A 1IDHA 2H62C 2L03A 1NYSA 2NBTA 3NH7A 2K3GA 3QB4B 4QTIU 1KBSA 5DU1A 1M9ZA 5DZ5A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CXO A;  2MJY A;  1FAS A;  1IK8 A;  1V6P A;  2H7Z B;  3BT2 U;  2BHI A;  4FAO E;  1QM7 A;  2CTX A;  3NDS A;  1LSI A;  3HH7 A;  1ERA A;  2PJY B;  1B41 B;  3KFD E;  2I9B E;  2L5S A;  1MAH F;  2H64 C;  3PLC A;  1JE9 A;  1KU6 B;  1FSC A;  1PLO A;  1NXB A;  4BIK B;  1IKC A;  4ZQY A;  4IYE A;  3FEV A;  5IMY C;  3EBX A;  1HC9 A;  2HLR A;  1TFS A;  4HQP F;  4EY8 B;  1UG4 A;  1REW C;  1MR6 A;  1ES7 B;  3VTS A;  1KC4 A;  2PJY C;  2VLW A;  2CRT A;  3BT1 U;  4P7U A;  1IDL A;  2BTX A;  4XJJ A;  1JBD A;  1NTN A;  1CCQ A;  4BDT B;  1CRE A;  2LA1 A;  4OM4 A;  1LXH A;  1LJZ A;  1TGX A;  1CTX A;  2CDX A;  2ABX A;  1COE A;  2H62 D;  1F94 A;  1CB9 A;  2JVE A;  2MJ0 A;  1LX5 B;  2QJB C;  1ZAD A;  3U73 U;  5DO6 A;  1ONJ A;  2FD6 U;  1KXI A;  1RGJ A;  5IMT D;  1IJC A;  1KBT A;  4FAO C;  3EVS C;  2GOO B;  1F8U B;  2J8B A;  1LXG A;  1TXB A;  1KBA A;  2MUP A;  1NYU A;  1G6M A;  1I02 A;  2H8U A;  2QC1 A;  2N99 A;  1KTZ B;  1FRA A;  1KS6 A;  2UX2 A;  4RUD A;  4AEA A;  1FSS B;  1CDT A;  5EBX A;  4UY2 C;  2MUO A;  2CCX A;  1H0J A;  1YWH A;  1CVO A;  1QKE A;  2MJ4 A;  1CRF A;  1DRS A;  2H5F A;  1FFJ A;  1FF4 A;  2CRS A;  1L4W A;  2H64 B;  1BXP A;  4OM5 A;  3NEQ A;  1VB0 A;  2H7Z A;  2LCR A;  3LAQ U;  2ERA A;  1IDG A;  1HOY A;  2JQP A;  1JGK A;  6EBX A;  3ERA A;  1HC9 B;  1HAA A;  1CDS A;  1BTE A;  1KFH A;  1NOR A;  1CDQ A;  2HLQ A;  2QJA C;  1XT3 A;  3U74 U;  1ERG A;  2MHY A;  1NEA A;  4LFT A;  3KFD I;  1IQ9 A;  2OFS A;  1CHV S;  1S4Y A;  1HAJ A;  2GOO C;  1TXA A;  1KL8 A;  1W6B A;  1ABT A;  1IDI A;  2QJ9 C;  2UWR A;  2MFA A;  1NTX A;  1CXN A;  2X8B B;  1QKD A;  1COD A;  4DO8 A;  1CDR A;  1RL5 A;  1IDH A;  2H62 C;  2L03 A;  1NYS A;  2NBT A;  3NH7 A;  2K3G A;  3QB4 B;  4QTI U;  1KBS A;  5DU1 A;  1M9Z A;  5DZ5 A; 
#chains in the Genus database with same CATH topology
 1CXO A;  2MJY A;  1FAS A;  1IK8 A;  1V6P A;  2H7Z B;  3BT2 U;  2BHI A;  4FAO E;  1QM7 A;  2CTX A;  3NDS A;  1LSI A;  3HH7 A;  1ERA A;  2PJY B;  1B41 B;  3KFD E;  2I9B E;  2L5S A;  1MAH F;  2H64 C;  3PLC A;  1JE9 A;  1KU6 B;  1FSC A;  1PLO A;  1NXB A;  4BIK B;  1IKC A;  4ZQY A;  4IYE A;  3FEV A;  5IMY C;  3EBX A;  1HC9 A;  2HLR A;  1TFS A;  4HQP F;  4EY8 B;  1UG4 A;  1REW C;  1MR6 A;  1ES7 B;  3VTS A;  1KC4 A;  2PJY C;  2VLW A;  2CRT A;  3BT1 U;  4P7U A;  1IDL A;  2BTX A;  4XJJ A;  1JBD A;  1NTN A;  1CCQ A;  4BDT B;  1CRE A;  2LA1 A;  4OM4 A;  1LXH A;  1LJZ A;  1TGX A;  1CTX A;  2CDX A;  2ABX A;  1COE A;  2H62 D;  1F94 A;  1CB9 A;  2JVE A;  4KSN A;  2MJ0 A;  1LX5 B;  2QJB C;  1ZAD A;  3U73 U;  5DO6 A;  1ONJ A;  2FD6 U;  1KXI A;  1RGJ A;  5IMT D;  1IJC A;  1KBT A;  4FAO C;  3EVS C;  2GOO B;  1F8U B;  2J8B A;  1LXG A;  1TXB A;  1KBA A;  2MUP A;  1NYU A;  1G6M A;  1I02 A;  2H8U A;  2QC1 A;  2N99 A;  1KTZ B;  1FRA A;  1KS6 A;  2UX2 A;  4RUD A;  4AEA A;  1FSS B;  1CDT A;  5EBX A;  4UY2 C;  2MUO A;  2CCX A;  1H0J A;  1YWH A;  1CVO A;  1QKE A;  2MJ4 A;  1CRF A;  1DRS A;  2H5F A;  1FFJ A;  1FF4 A;  2CRS A;  1L4W A;  2H64 B;  1BXP A;  4OM5 A;  3NEQ A;  1VB0 A;  2H7Z A;  2LCR A;  3LAQ U;  2ERA A;  1IDG A;  1HOY A;  2JQP A;  1JGK A;  6EBX A;  3ERA A;  1HC9 B;  1HAA A;  1CDS A;  1BTE A;  1KFH A;  1NOR A;  1CDQ A;  2HLQ A;  2QJA C;  1XT3 A;  3U74 U;  1ERG A;  2MHY A;  1NEA A;  4LFT A;  3KFD I;  1IQ9 A;  2OFS A;  1CHV S;  1S4Y A;  1HAJ A;  2GOO C;  1TXA A;  1KL8 A;  1W6B A;  1ABT A;  1IDI A;  2QJ9 C;  2UWR A;  2MFA A;  1NTX A;  1CXN A;  2X8B B;  1QKD A;  1COD A;  4DO8 A;  1CDR A;  1RL5 A;  1IDH A;  2H62 C;  2L03 A;  1NYS A;  2NBT A;  3NH7 A;  2K3G A;  3QB4 B;  4QTI U;  1KBS A;  5DU1 A;  1M9Z A;  5DZ5 A; 
#chains in the Genus database with same CATH homology
 1CXO A;  2MJY A;  1FAS A;  1IK8 A;  1V6P A;  2H7Z B;  3BT2 U;  2BHI A;  4FAO E;  1QM7 A;  2CTX A;  3NDS A;  1LSI A;  3HH7 A;  1ERA A;  2PJY B;  1B41 B;  3KFD E;  2I9B E;  2L5S A;  1MAH F;  2H64 C;  3PLC A;  1JE9 A;  1KU6 B;  1FSC A;  1PLO A;  1NXB A;  4BIK B;  1IKC A;  4ZQY A;  4IYE A;  3FEV A;  5IMY C;  3EBX A;  1HC9 A;  2HLR A;  1TFS A;  4HQP F;  4EY8 B;  1UG4 A;  1REW C;  1MR6 A;  1ES7 B;  3VTS A;  1KC4 A;  2PJY C;  2VLW A;  2CRT A;  3BT1 U;  4P7U A;  1IDL A;  2BTX A;  4XJJ A;  1JBD A;  1NTN A;  1CCQ A;  4BDT B;  1CRE A;  2LA1 A;  4OM4 A;  1LXH A;  1LJZ A;  1TGX A;  1CTX A;  2CDX A;  2ABX A;  1COE A;  2H62 D;  1F94 A;  1CB9 A;  2JVE A;  4KSN A;  2MJ0 A;  1LX5 B;  2QJB C;  1ZAD A;  3U73 U;  5DO6 A;  1ONJ A;  2FD6 U;  1KXI A;  1RGJ A;  5IMT D;  1IJC A;  1KBT A;  4FAO C;  3EVS C;  2GOO B;  1F8U B;  2J8B A;  1LXG A;  1TXB A;  1KBA A;  2MUP A;  1NYU A;  1G6M A;  1I02 A;  2H8U A;  2QC1 A;  2N99 A;  1KTZ B;  1FRA A;  1KS6 A;  2UX2 A;  4RUD A;  4AEA A;  1FSS B;  1CDT A;  5EBX A;  4UY2 C;  2MUO A;  2CCX A;  1H0J A;  1YWH A;  1CVO A;  1QKE A;  2MJ4 A;  1CRF A;  1DRS A;  2H5F A;  1FFJ A;  1FF4 A;  2CRS A;  1L4W A;  2H64 B;  1BXP A;  4OM5 A;  3NEQ A;  1VB0 A;  2H7Z A;  2LCR A;  3LAQ U;  2ERA A;  1IDG A;  1HOY A;  2JQP A;  1JGK A;  6EBX A;  3ERA A;  1HC9 B;  1HAA A;  1CDS A;  1BTE A;  1KFH A;  1NOR A;  1CDQ A;  2HLQ A;  2QJA C;  1XT3 A;  3U74 U;  1ERG A;  2MHY A;  1NEA A;  4LFT A;  3KFD I;  1IQ9 A;  2OFS A;  1CHV S;  1S4Y A;  1HAJ A;  2GOO C;  1TXA A;  1KL8 A;  1W6B A;  1ABT A;  1IDI A;  2QJ9 C;  2UWR A;  2MFA A;  1NTX A;  1CXN A;  2X8B B;  1QKD A;  1COD A;  4DO8 A;  1CDR A;  1RL5 A;  1IDH A;  2H62 C;  2L03 A;  1NYS A;  2NBT A;  3NH7 A;  2K3G A;  3QB4 B;  4QTI U;  1KBS A;  5DU1 A;  1M9Z A;  5DZ5 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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