3U74U

Crystal structure of stabilized human upar mutant
Total Genus 69
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
69
sequence length
283
structure length
263
Chain Sequence
LRCMQCKTNGDCRVEECALGQDLCRTTIVRLWEEGEELELVEKSCTCSEKTNRTLSYRTGLKITSLTEVVCGLDLCNQGNRYLECISCGSSDMSCERGRHQSLQCRSPEEQCLDVVTHWDDRHLRGCGYLPGCPGSNGFHNNDTFHFLKCCNTTKCNEGPILELENLPQNGRQCYSCKGNSTHGCSSEETFLIDCRGPMNQCLVATGTHEPKNQSYMVRGCATASMCQHAHLGDAFSMCHIDVSCCTKSGCNHPDLDVQYRSG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase receptor
source organism Homo sapiens
publication title Crystal structure of the urokinase receptor in a ligand-free form.
pubmed doi rcsb
molecule keywords Urokinase plasminogen activator surface receptor
total genus 69
structure length 263
sequence length 283
ec nomenclature
pdb deposition date 2011-10-13

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
U PF00021 UPAR_LY6 u-PAR/Ly-6 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3u74U01
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3u74U03
2.10.60.10 Mainly Beta Ribbon CD59 CD59 3u74U02
4BDTB 2CRSA 1V6PA 2L03A 3NDSA 1NORA 1NYSA 3QB4B 1CDRA 3BT2U 1HAJA 1ONJA 1M9ZA 1L4WA 4OM4A 2L5SA 4XJJA 2I9BE 2VLWA 2H8UA 3FEVA 5DU1A 2JVEA 4RUDA 1FSCA 2MJ4A 1CB9A 4EY8B 2H64C 1CDQA 5EBXA 5IMYC 1MR6A 1LXHA 3PLCA 1CVOA 2HLQA 1RGJA 1ERAA 1H0JA 1CDSA 2N99A 1NEAA 1KS6A 2JQPA 2CCXA 2K3GA 1IKCA 2PJYC 1NXBA 2LCRA 6EBXA 2H5FA 1KBTA 1KC4A 3U73U 1CXOA 3NEQA 1KXIA 1BXPA 1CRFA 1FFJA 1CXNA 4BIKB 1FASA 4P7UA 1JGKA 1LX5B 1I02A 1KFHA 3KFDI 2MJ0A 2PJYB 1TFSA 4ZQYA 1TXAA 2GOOC 1NTNA 1XT3A 4DO8A 2HLRA 2QC1A 2H7ZB 1S4YA 1TXBA 1PLOA 1JBDA 2MHYA 3LAQU 4UY2C 4LFTA 1FRAA 1JE9A 1IDLA 1HC9B 2MUPA 2GOOB 1COEA 3HH7A 1F94A 2H64B 5DO6A 4AEAA 1CHVS 2H62D 2ABXA 1ABTA 4OM5A 2H7ZA 4IYEA 2BHIA 1RL5A 1TGXA 1ZADA 5IMTD 1QKEA 1IJCA 1IDHA 1KL8A 2MFAA 1LSIA 1F8UB 1BTEA 2OFSA 3EBXA 1IK8A 1CTXA 5DZ5A 2UX2A 2CRTA 2NBTA 3VTSA 2CTXA 1B41B 1W6BA 1FF4A 1HAAA 3BT1U 2MUOA 1ERGA 1REWC 2J8BA 1IQ9A 2QJAC 2BTXA 3ERAA 3NH7A 1YWHA 2H62C 2MJYA 3KFDE 1G6MA 1UG4A 2LA1A 4FAOC 3EVSC 1NTXA 1KTZB 1LJZA 1FSSB 1IDGA 2FD6U 1CODA 4QTIU 1CREA 1VB0A 2CDXA 1LXGA 4FAOE 2ERAA 1KBSA 1HOYA 2QJ9C 1NYUA 1CDTA 1ES7B 4HQPF 1HC9A 1KU6B 1QM7A 1IDIA 1QKDA 1CCQA 1KBAA 2X8BB 1MAHF 2QJBC 1DRSA 3U74U 2UWRA
chains in the Genus database with same CATH superfamily
4BDTB 2CRSA 1V6PA 2L03A 3NDSA 1NORA 1NYSA 3QB4B 1CDRA 3BT2U 1HAJA 1ONJA 1M9ZA 1L4WA 4OM4A 2L5SA 4XJJA 2I9BE 2VLWA 2H8UA 3FEVA 5DU1A 2JVEA 4RUDA 1FSCA 2MJ4A 1CB9A 4EY8B 2H64C 1CDQA 5EBXA 5IMYC 1MR6A 1LXHA 3PLCA 1CVOA 2HLQA 1RGJA 1ERAA 1H0JA 1CDSA 2N99A 1NEAA 1KS6A 2JQPA 2CCXA 2K3GA 1IKCA 2PJYC 1NXBA 2LCRA 6EBXA 2H5FA 1KBTA 1KC4A 3U73U 1CXOA 3NEQA 1KXIA 1BXPA 1CRFA 1FFJA 1CXNA 4BIKB 1FASA 4P7UA 1JGKA 1LX5B 1I02A 1KFHA 3KFDI 2MJ0A 2PJYB 1TFSA 4ZQYA 1TXAA 2GOOC 1NTNA 1XT3A 4DO8A 2HLRA 2QC1A 2H7ZB 1S4YA 1TXBA 1PLOA 1JBDA 2MHYA 3LAQU 4UY2C 4LFTA 1FRAA 1JE9A 1IDLA 1HC9B 2MUPA 2GOOB 1COEA 3HH7A 1F94A 2H64B 5DO6A 4AEAA 1CHVS 2H62D 2ABXA 1ABTA 4OM5A 2H7ZA 4IYEA 2BHIA 1RL5A 1TGXA 1ZADA 5IMTD 1QKEA 1IJCA 1IDHA 1KL8A 2MFAA 1LSIA 1F8UB 1BTEA 2OFSA 3EBXA 1IK8A 1CTXA 5DZ5A 2UX2A 2CRTA 2NBTA 3VTSA 2CTXA 1B41B 1W6BA 1FF4A 1HAAA 3BT1U 2MUOA 1ERGA 1REWC 2J8BA 4KSNA 1IQ9A 2QJAC 2BTXA 3ERAA 3NH7A 1YWHA 2H62C 2MJYA 3KFDE 1G6MA 1UG4A 2LA1A 4FAOC 3EVSC 1NTXA 1KTZB 1LJZA 1FSSB 1IDGA 2FD6U 1CODA 4QTIU 1CREA 1VB0A 2CDXA 1LXGA 4FAOE 2ERAA 1KBSA 1HOYA 2QJ9C 1NYUA 1CDTA 1ES7B 4HQPF 1HC9A 1KU6B 1QM7A 1IDIA 1QKDA 1CCQA 1KBAA 2X8BB 1MAHF 2QJBC 1DRSA 3U74U 2UWRA
chains in the Genus database with same CATH topology
4BDTB 2CRSA 1V6PA 2L03A 3NDSA 1NORA 1NYSA 3QB4B 1CDRA 3BT2U 1HAJA 1ONJA 1M9ZA 1L4WA 4OM4A 2L5SA 4XJJA 2I9BE 2VLWA 2H8UA 3FEVA 5DU1A 2JVEA 4RUDA 1FSCA 2MJ4A 1CB9A 4EY8B 2H64C 1CDQA 5EBXA 5IMYC 1MR6A 1LXHA 3PLCA 1CVOA 2HLQA 1RGJA 1ERAA 1H0JA 1CDSA 2N99A 1NEAA 1KS6A 2JQPA 2CCXA 2K3GA 1IKCA 2PJYC 1NXBA 2LCRA 6EBXA 2H5FA 1KBTA 1KC4A 3U73U 1CXOA 3NEQA 1KXIA 1BXPA 1CRFA 1FFJA 1CXNA 4BIKB 1FASA 4P7UA 1JGKA 1LX5B 1I02A 1KFHA 3KFDI 2MJ0A 2PJYB 1TFSA 4ZQYA 1TXAA 2GOOC 1NTNA 1XT3A 4DO8A 2HLRA 2QC1A 2H7ZB 1S4YA 1TXBA 1PLOA 1JBDA 2MHYA 3LAQU 4UY2C 4LFTA 1FRAA 1JE9A 1IDLA 1HC9B 2MUPA 2GOOB 1COEA 3HH7A 1F94A 2H64B 5DO6A 4AEAA 1CHVS 2H62D 2ABXA 1ABTA 4OM5A 2H7ZA 4IYEA 2BHIA 1RL5A 1TGXA 1ZADA 5IMTD 1QKEA 1IJCA 1IDHA 1KL8A 2MFAA 1LSIA 1F8UB 1BTEA 2OFSA 3EBXA 1IK8A 1CTXA 5DZ5A 2UX2A 2CRTA 2NBTA 3VTSA 2CTXA 1B41B 1W6BA 1FF4A 1HAAA 3BT1U 2MUOA 1ERGA 1REWC 2J8BA 4KSNA 1IQ9A 2QJAC 2BTXA 3ERAA 3NH7A 1YWHA 2H62C 2MJYA 3KFDE 1G6MA 1UG4A 2LA1A 4FAOC 3EVSC 1NTXA 1KTZB 1LJZA 1FSSB 1IDGA 2FD6U 1CODA 4QTIU 1CREA 1VB0A 2CDXA 1LXGA 4FAOE 2ERAA 1KBSA 1HOYA 2QJ9C 1NYUA 1CDTA 1ES7B 4HQPF 1HC9A 1KU6B 1QM7A 1IDIA 1QKDA 1CCQA 1KBAA 2X8BB 1MAHF 2QJBC 1DRSA 3U74U 2UWRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4BDT B;  2CRS A;  1V6P A;  2L03 A;  3NDS A;  1NOR A;  1NYS A;  3QB4 B;  1CDR A;  3BT2 U;  1HAJ A;  1ONJ A;  1M9Z A;  1L4W A;  4OM4 A;  2L5S A;  4XJJ A;  2I9B E;  2VLW A;  2H8U A;  3FEV A;  5DU1 A;  2JVE A;  4RUD A;  1FSC A;  2MJ4 A;  1CB9 A;  4EY8 B;  2H64 C;  1CDQ A;  5EBX A;  5IMY C;  1MR6 A;  1LXH A;  3PLC A;  1CVO A;  2HLQ A;  1RGJ A;  1ERA A;  1H0J A;  1CDS A;  2N99 A;  1NEA A;  1KS6 A;  2JQP A;  2CCX A;  2K3G A;  1IKC A;  2PJY C;  1NXB A;  2LCR A;  6EBX A;  2H5F A;  1KBT A;  1KC4 A;  3U73 U;  1CXO A;  3NEQ A;  1KXI A;  1BXP A;  1CRF A;  1FFJ A;  1CXN A;  4BIK B;  1FAS A;  4P7U A;  1JGK A;  1LX5 B;  1I02 A;  1KFH A;  3KFD I;  2MJ0 A;  2PJY B;  1TFS A;  4ZQY A;  1TXA A;  2GOO C;  1NTN A;  1XT3 A;  4DO8 A;  2HLR A;  2QC1 A;  2H7Z B;  1S4Y A;  1TXB A;  1PLO A;  1JBD A;  2MHY A;  3LAQ U;  4UY2 C;  4LFT A;  1FRA A;  1JE9 A;  1IDL A;  1HC9 B;  2MUP A;  2GOO B;  1COE A;  3HH7 A;  1F94 A;  2H64 B;  5DO6 A;  4AEA A;  1CHV S;  2H62 D;  2ABX A;  1ABT A;  4OM5 A;  2H7Z A;  4IYE A;  2BHI A;  1RL5 A;  1TGX A;  1ZAD A;  5IMT D;  1QKE A;  1IJC A;  1IDH A;  1KL8 A;  2MFA A;  1LSI A;  1F8U B;  1BTE A;  2OFS A;  3EBX A;  1IK8 A;  1CTX A;  5DZ5 A;  2UX2 A;  2CRT A;  2NBT A;  3VTS A;  2CTX A;  1B41 B;  1W6B A;  1FF4 A;  1HAA A;  3BT1 U;  2MUO A;  1ERG A;  1REW C;  2J8B A;  1IQ9 A;  2QJA C;  2BTX A;  3ERA A;  3NH7 A;  1YWH A;  2H62 C;  2MJY A;  3KFD E;  1G6M A;  1UG4 A;  2LA1 A;  4FAO C;  3EVS C;  1NTX A;  1KTZ B;  1LJZ A;  1FSS B;  1IDG A;  2FD6 U;  1COD A;  4QTI U;  1CRE A;  1VB0 A;  2CDX A;  1LXG A;  4FAO E;  2ERA A;  1KBS A;  1HOY A;  2QJ9 C;  1NYU A;  1CDT A;  1ES7 B;  4HQP F;  1HC9 A;  1KU6 B;  1QM7 A;  1IDI A;  1QKD A;  1CCQ A;  1KBA A;  2X8B B;  1MAH F;  2QJB C;  1DRS A;  3U74 U;  2UWR A; 
#chains in the Genus database with same CATH topology
 4BDT B;  2CRS A;  1V6P A;  2L03 A;  3NDS A;  1NOR A;  1NYS A;  3QB4 B;  1CDR A;  3BT2 U;  1HAJ A;  1ONJ A;  1M9Z A;  1L4W A;  4OM4 A;  2L5S A;  4XJJ A;  2I9B E;  2VLW A;  2H8U A;  3FEV A;  5DU1 A;  2JVE A;  4RUD A;  1FSC A;  2MJ4 A;  1CB9 A;  4EY8 B;  2H64 C;  1CDQ A;  5EBX A;  5IMY C;  1MR6 A;  1LXH A;  3PLC A;  1CVO A;  2HLQ A;  1RGJ A;  1ERA A;  1H0J A;  1CDS A;  2N99 A;  1NEA A;  1KS6 A;  2JQP A;  2CCX A;  2K3G A;  1IKC A;  2PJY C;  1NXB A;  2LCR A;  6EBX A;  2H5F A;  1KBT A;  1KC4 A;  3U73 U;  1CXO A;  3NEQ A;  1KXI A;  1BXP A;  1CRF A;  1FFJ A;  1CXN A;  4BIK B;  1FAS A;  4P7U A;  1JGK A;  1LX5 B;  1I02 A;  1KFH A;  3KFD I;  2MJ0 A;  2PJY B;  1TFS A;  4ZQY A;  1TXA A;  2GOO C;  1NTN A;  1XT3 A;  4DO8 A;  2HLR A;  2QC1 A;  2H7Z B;  1S4Y A;  1TXB A;  1PLO A;  1JBD A;  2MHY A;  3LAQ U;  4UY2 C;  4LFT A;  1FRA A;  1JE9 A;  1IDL A;  1HC9 B;  2MUP A;  2GOO B;  1COE A;  3HH7 A;  1F94 A;  2H64 B;  5DO6 A;  4AEA A;  1CHV S;  2H62 D;  2ABX A;  1ABT A;  4OM5 A;  2H7Z A;  4IYE A;  2BHI A;  1RL5 A;  1TGX A;  1ZAD A;  5IMT D;  1QKE A;  1IJC A;  1IDH A;  1KL8 A;  2MFA A;  1LSI A;  1F8U B;  1BTE A;  2OFS A;  3EBX A;  1IK8 A;  1CTX A;  5DZ5 A;  2UX2 A;  2CRT A;  2NBT A;  3VTS A;  2CTX A;  1B41 B;  1W6B A;  1FF4 A;  1HAA A;  3BT1 U;  2MUO A;  1ERG A;  1REW C;  2J8B A;  4KSN A;  1IQ9 A;  2QJA C;  2BTX A;  3ERA A;  3NH7 A;  1YWH A;  2H62 C;  2MJY A;  3KFD E;  1G6M A;  1UG4 A;  2LA1 A;  4FAO C;  3EVS C;  1NTX A;  1KTZ B;  1LJZ A;  1FSS B;  1IDG A;  2FD6 U;  1COD A;  4QTI U;  1CRE A;  1VB0 A;  2CDX A;  1LXG A;  4FAO E;  2ERA A;  1KBS A;  1HOY A;  2QJ9 C;  1NYU A;  1CDT A;  1ES7 B;  4HQP F;  1HC9 A;  1KU6 B;  1QM7 A;  1IDI A;  1QKD A;  1CCQ A;  1KBA A;  2X8B B;  1MAH F;  2QJB C;  1DRS A;  3U74 U;  2UWR A; 
#chains in the Genus database with same CATH homology
 4BDT B;  2CRS A;  1V6P A;  2L03 A;  3NDS A;  1NOR A;  1NYS A;  3QB4 B;  1CDR A;  3BT2 U;  1HAJ A;  1ONJ A;  1M9Z A;  1L4W A;  4OM4 A;  2L5S A;  4XJJ A;  2I9B E;  2VLW A;  2H8U A;  3FEV A;  5DU1 A;  2JVE A;  4RUD A;  1FSC A;  2MJ4 A;  1CB9 A;  4EY8 B;  2H64 C;  1CDQ A;  5EBX A;  5IMY C;  1MR6 A;  1LXH A;  3PLC A;  1CVO A;  2HLQ A;  1RGJ A;  1ERA A;  1H0J A;  1CDS A;  2N99 A;  1NEA A;  1KS6 A;  2JQP A;  2CCX A;  2K3G A;  1IKC A;  2PJY C;  1NXB A;  2LCR A;  6EBX A;  2H5F A;  1KBT A;  1KC4 A;  3U73 U;  1CXO A;  3NEQ A;  1KXI A;  1BXP A;  1CRF A;  1FFJ A;  1CXN A;  4BIK B;  1FAS A;  4P7U A;  1JGK A;  1LX5 B;  1I02 A;  1KFH A;  3KFD I;  2MJ0 A;  2PJY B;  1TFS A;  4ZQY A;  1TXA A;  2GOO C;  1NTN A;  1XT3 A;  4DO8 A;  2HLR A;  2QC1 A;  2H7Z B;  1S4Y A;  1TXB A;  1PLO A;  1JBD A;  2MHY A;  3LAQ U;  4UY2 C;  4LFT A;  1FRA A;  1JE9 A;  1IDL A;  1HC9 B;  2MUP A;  2GOO B;  1COE A;  3HH7 A;  1F94 A;  2H64 B;  5DO6 A;  4AEA A;  1CHV S;  2H62 D;  2ABX A;  1ABT A;  4OM5 A;  2H7Z A;  4IYE A;  2BHI A;  1RL5 A;  1TGX A;  1ZAD A;  5IMT D;  1QKE A;  1IJC A;  1IDH A;  1KL8 A;  2MFA A;  1LSI A;  1F8U B;  1BTE A;  2OFS A;  3EBX A;  1IK8 A;  1CTX A;  5DZ5 A;  2UX2 A;  2CRT A;  2NBT A;  3VTS A;  2CTX A;  1B41 B;  1W6B A;  1FF4 A;  1HAA A;  3BT1 U;  2MUO A;  1ERG A;  1REW C;  2J8B A;  4KSN A;  1IQ9 A;  2QJA C;  2BTX A;  3ERA A;  3NH7 A;  1YWH A;  2H62 C;  2MJY A;  3KFD E;  1G6M A;  1UG4 A;  2LA1 A;  4FAO C;  3EVS C;  1NTX A;  1KTZ B;  1LJZ A;  1FSS B;  1IDG A;  2FD6 U;  1COD A;  4QTI U;  1CRE A;  1VB0 A;  2CDX A;  1LXG A;  4FAO E;  2ERA A;  1KBS A;  1HOY A;  2QJ9 C;  1NYU A;  1CDT A;  1ES7 B;  4HQP F;  1HC9 A;  1KU6 B;  1QM7 A;  1IDI A;  1QKD A;  1CCQ A;  1KBA A;  2X8B B;  1MAH F;  2QJB C;  1DRS A;  3U74 U;  2UWR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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