3UBPB

Diamidophosphate inhibited bacillus pasteurii urease
Total Genus 29
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
29
sequence length
122
structure length
122
Chain Sequence
NYIVPGEYRVAEGEIEINAGREKTTIRVSNTGDRPIQVGSHIHFVEVNKELLFDRAEGIGRRLNIPSGTAARFEPGEEMEVELTELGGNREVFGISDLTNGSVDNKELILQRAKELGYKGVE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hydrolase
molecule keywords PROTEIN (UREASE GAMMA SUBUNIT)
publication title A new proposal for urease mechanism based on the crystal structures of the native and inhibited enzyme from Bacillus pasteurii: why urea hydrolysis costs two nickels.
pubmed doi rcsb
total genus 29
structure length 122
sequence length 122
ec nomenclature ec 3.5.1.5: Urease.
pdb deposition date 1998-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00699 Urease_beta Urease beta subunit
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.150.10 Mainly Beta Ribbon Urease, subunit B Urease, beta subunit 3ubpB00
1A5LB 1KRBB 1EJUB 1EF2B 1EJWB 1FWAB 4GY7A 3QGKA 1KRCB 1UBPB 2KAUB 3LA4A 4G7EA 1EJRB 1EJTB 4G7EB 5FSDB 1A5NB 4EPBB 1EJSB 4CEXB 1E9YA 4EP8B 1A5MB 1FWJB 1EJXB 1FWFB 1A5KB 4GOAA 1KRAB 1FWIB 4Z42B 4UBPB 5A6TB 4EPDB 1A5OB 4AC7B 4H9MA 1FWBB 1IE7B 5FSEB 1FWCB 4EPEB 1FWGB 5G4HB 3QGAA 1S3TB 1E9ZA 1FWEB 1EJVB 1FWDB 1FWHB 2UBPB 4CEUB 3UBPB
chains in the Genus database with same CATH superfamily
1A5LB 1KRBB 1EJUB 1EF2B 1EJWB 1FWAB 4GY7A 3QGKA 1KRCB 1UBPB 2KAUB 3LA4A 4G7EA 1EJRB 1EJTB 4G7EB 5FSDB 1A5NB 4EPBB 1EJSB 4CEXB 1E9YA 4EP8B 1A5MB 1FWJB 1EJXB 1FWFB 1A5KB 4GOAA 1KRAB 1FWIB 4Z42B 4UBPB 5A6TB 4EPDB 1A5OB 4AC7B 4H9MA 1FWBB 1IE7B 5FSEB 1FWCB 4EPEB 1FWGB 5G4HB 3QGAA 1S3TB 1E9ZA 1FWEB 1EJVB 1FWDB 1FWHB 2UBPB 4CEUB 3UBPB
chains in the Genus database with same CATH topology
1A5LB 1KRBB 1EJUB 1EF2B 1EJWB 1FWAB 4GY7A 3QGKA 1KRCB 1UBPB 2KAUB 3LA4A 4G7EA 1EJRB 1EJTB 4G7EB 5FSDB 1A5NB 4EPBB 1EJSB 4CEXB 1E9YA 4EP8B 1A5MB 1FWJB 1EJXB 1FWFB 1A5KB 4GOAA 1KRAB 1FWIB 4Z42B 4UBPB 5A6TB 4EPDB 1A5OB 4AC7B 4H9MA 1FWBB 1IE7B 5FSEB 1FWCB 4EPEB 1FWGB 5G4HB 3QGAA 1S3TB 1E9ZA 1FWEB 1EJVB 1FWDB 1FWHB 2UBPB 4CEUB 3UBPB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1A5L B;  1KRB B;  1EJU B;  1EF2 B;  1EJW B;  1FWA B;  4GY7 A;  3QGK A;  1KRC B;  1UBP B;  2KAU B;  3LA4 A;  4G7E A;  1EJR B;  1EJT B;  4G7E B;  5FSD B;  1A5N B;  4EPB B;  1EJS B;  4CEX B;  1E9Y A;  4EP8 B;  1A5M B;  1FWJ B;  1EJX B;  1FWF B;  1A5K B;  4GOA A;  1KRA B;  1FWI B;  4Z42 B;  4UBP B;  5A6T B;  4EPD B;  1A5O B;  4AC7 B;  4H9M A;  1FWB B;  1IE7 B;  5FSE B;  1FWC B;  4EPE B;  1FWG B;  5G4H B;  3QGA A;  1S3T B;  1E9Z A;  1FWE B;  1EJV B;  1FWD B;  1FWH B;  2UBP B;  4CEU B;  3UBP B; 
#chains in the Genus database with same CATH topology
 1A5L B;  1KRB B;  1EJU B;  1EF2 B;  1EJW B;  1FWA B;  4GY7 A;  3QGK A;  1KRC B;  1UBP B;  2KAU B;  3LA4 A;  4G7E A;  1EJR B;  1EJT B;  4G7E B;  5FSD B;  1A5N B;  4EPB B;  1EJS B;  4CEX B;  1E9Y A;  4EP8 B;  1A5M B;  1FWJ B;  1EJX B;  1FWF B;  1A5K B;  4GOA A;  1KRA B;  1FWI B;  4Z42 B;  4UBP B;  5A6T B;  4EPD B;  1A5O B;  4AC7 B;  4H9M A;  1FWB B;  1IE7 B;  5FSE B;  1FWC B;  4EPE B;  1FWG B;  5G4H B;  3QGA A;  1S3T B;  1E9Z A;  1FWE B;  1EJV B;  1FWD B;  1FWH B;  2UBP B;  4CEU B;  3UBP B; 
#chains in the Genus database with same CATH homology
 1A5L B;  1KRB B;  1EJU B;  1EF2 B;  1EJW B;  1FWA B;  4GY7 A;  3QGK A;  1KRC B;  1UBP B;  2KAU B;  3LA4 A;  4G7E A;  1EJR B;  1EJT B;  4G7E B;  5FSD B;  1A5N B;  4EPB B;  1EJS B;  4CEX B;  1E9Y A;  4EP8 B;  1A5M B;  1FWJ B;  1EJX B;  1FWF B;  1A5K B;  4GOA A;  1KRA B;  1FWI B;  4Z42 B;  4UBP B;  5A6T B;  4EPD B;  1A5O B;  4AC7 B;  4H9M A;  1FWB B;  1IE7 B;  5FSE B;  1FWC B;  4EPE B;  1FWG B;  5G4H B;  3QGA A;  1S3T B;  1E9Z A;  1FWE B;  1EJV B;  1FWD B;  1FWH B;  2UBP B;  4CEU B;  3UBP B; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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