3UE7B

X-ray crystal structure of a novel topological analogue of crambin
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
46
structure length
46
Chain Sequence
TTCCPSIVAKSNFNACRLPGTPEALCATYTGCIIIPGATCPGDYAN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Unknown function
molecule keywords D-Crambin
publication title Design, total chemical synthesis, and x-ray structure of a protein having a novel linear-loop polypeptide chain topology.
pubmed doi rcsb
total genus 13
structure length 46
sequence length 46
ec nomenclature
pdb deposition date 2011-10-28

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
B PF00321 Thionin Plant thionin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1350.10 Alpha Beta 2-Layer Sandwich Crambin Thionin-like 3ue7B00
3SZSA 1JXWA 1JMPA 1CCMA 1OKHA 1NBLA 2EYAA 1WUWA 3C8PA 1JXUA 2FD9A 2FD7A 1JMNA 1ORLA 1CBNA 3UE7B 1AB1A 1CNRA 2V9BA 4FC1A 1JXYA 1EJGA 2EYBA 3U7TA 1JXTA 1CRNA 3NIRA 2EYDA 1YVAA 1CCNA 1ED0A 2EYCA 1BHPA 2PLHA 1YV8A 1JXXA 1CXRA
chains in the Genus database with same CATH superfamily
3SZSA 1JNBA 1JXWA 1JMPA 1CCMA 1OKHA 1NBLA 2EYAA 1WUWA 3C8PA 1JXUA 2FD9A 2FD7A 1JMNA 1ORLA 1CBNA 3UE7B 1AB1A 1CNRA 2V9BA 4FC1A 1JXYA 1EJGA 2EYBA 3U7TA 1JXTA 1CRNA 3NIRA 2EYDA 1YVAA 1H5WA 1CCNA 1ED0A 1IJGA 2EYCA 1BHPA 1FOUA 2PLHA 1YV8A 1JXXA 1CXRA
chains in the Genus database with same CATH topology
3SZSA 1JXWA 1JMPA 1CCMA 1OKHA 1NBLA 2EYAA 1WUWA 3C8PA 1JXUA 2FD9A 2FD7A 1JMNA 1ORLA 1CBNA 3UE7B 1AB1A 1CNRA 2V9BA 4FC1A 1JXYA 1EJGA 2EYBA 3U7TA 1JXTA 1CRNA 3NIRA 2EYDA 1YVAA 1CCNA 1ED0A 2EYCA 1BHPA 2PLHA 1YV8A 1JXXA 1CXRA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3SZS A;  1JXW A;  1JMP A;  1CCM A;  1OKH A;  1NBL A;  2EYA A;  1WUW A;  3C8P A;  1JXU A;  2FD9 A;  2FD7 A;  1JMN A;  1ORL A;  1CBN A;  3UE7 B;  1AB1 A;  1CNR A;  2V9B A;  4FC1 A;  1JXY A;  1EJG A;  2EYB A;  3U7T A;  1JXT A;  1CRN A;  3NIR A;  2EYD A;  1YVA A;  1CCN A;  1ED0 A;  2EYC A;  1BHP A;  2PLH A;  1YV8 A;  1JXX A;  1CXR A; 
#chains in the Genus database with same CATH topology
 3SZS A;  1JNB A;  1JXW A;  1JMP A;  1CCM A;  1OKH A;  1NBL A;  2EYA A;  1WUW A;  3C8P A;  1JXU A;  2FD9 A;  2FD7 A;  1JMN A;  1ORL A;  1CBN A;  3UE7 B;  1AB1 A;  1CNR A;  2V9B A;  4FC1 A;  1JXY A;  1EJG A;  2EYB A;  3U7T A;  1JXT A;  1CRN A;  3NIR A;  2EYD A;  1YVA A;  1H5W A;  1CCN A;  1ED0 A;  1IJG A;  2EYC A;  1BHP A;  1FOU A;  2PLH A;  1YV8 A;  1JXX A;  1CXR A; 
#chains in the Genus database with same CATH homology
 3SZS A;  1JXW A;  1JMP A;  1CCM A;  1OKH A;  1NBL A;  2EYA A;  1WUW A;  3C8P A;  1JXU A;  2FD9 A;  2FD7 A;  1JMN A;  1ORL A;  1CBN A;  3UE7 B;  1AB1 A;  1CNR A;  2V9B A;  4FC1 A;  1JXY A;  1EJG A;  2EYB A;  3U7T A;  1JXT A;  1CRN A;  3NIR A;  2EYD A;  1YVA A;  1CCN A;  1ED0 A;  2EYC A;  1BHP A;  2PLH A;  1YV8 A;  1JXX A;  1CXR A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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