3UKRF

Crystal structure of bos taurus arp2/3 complex with bound inhibitor ck-666
Total Genus 54
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
54
sequence length
167
structure length
167
Chain Sequence
TATLRPYLSAVRATLQAALCLENFSSQVVERHNKPEVEVRSSKELLLQPVTISRNEKEKVLIEGSINSVRVSIAVKQADEIEKILCHKFMRFMMMRAENFFILRRKPVEGYDISFLITNFHTEQMYKHKLVDFVIHFMEEIDKEISEMKLSVNARARIVAEEFLKNF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Structural protein
molecule keywords Actin-related protein 3
publication title Structural characterization and computer-aided optimization of a small-molecule inhibitor of the Arp2/3 complex, a key regulator of the actin cytoskeleton.
pubmed doi rcsb
total genus 54
structure length 167
sequence length 167
ec nomenclature
pdb deposition date 2011-11-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
F PF05856 ARPC4 ARP2/3 complex 20 kDa subunit (ARPC4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.1460.20 Alpha Beta 2-Layer Sandwich Yope Regulator; Chain: A, Yope Regulator; Chain: A, 3ukrF00
2P9LD 2P9SF 3DXMF 3UKRD 4JD2F 1K8KD 3RSEF 3UKUD 2P9KD 3DXKF 2P9PF 2P9ND 2P9IF 3ULEF 1TYQD 2P9LF 2P9UD 4XEID 1U2VD 3DWLD 1K8KF 3UKRF 3UKUF 2P9KF 2P9NF 2P9SD 3DXMD 4JD2D 1TYQF 3RSED 3DWLF 2P9UF 3DXKD 1U2VF 2P9PD 4XEIF 2P9ID 3ULED
chains in the Genus database with same CATH superfamily
2P9LD 2P9SF 1JYOA 3DXMF 3KXYA 4G6TA 3VX7B 3UKRD 2XGAA 4JD2F 4JMFB 1K8KD 1TTWA 3RSEF 3UKUD 2P9KD 3DXKF 1S28A 1K3SA 2P9ND 2P9PF 2P9IF 2LPUA 4H5BA 3TU3A 3ULEF 2OD0A 3ULED 2DYTA 1TYQD 2MQDA 2P9LF 1XKPB 2P9UD 4XEID 1U2VD 3DWLD 1K8KF 3UKRF 3UKUF 2KC5A 1K6ZA 2P9KF 3VX8B 1JYAA 1K3EA 2P9NF 3CXJA 4EBRA 3EPUA 1XKPC 2BSHA 2FM8A 2P9SD 4GF3A 1RY9A 3DXMD 4JD2D 1TYQF 3RSED 3DWLF 4AKXA 1L2WA 2P9UF 1U2VF 2P9PD 3DXKD 4XEIF 1N5BA 2PLGA 2BSJA 4GSLC 2P9ID 2BSIA 2BHOA
chains in the Genus database with same CATH topology
2P9LD 2P9SF 1JYOA 3DXMF 3KXYA 4G6TA 3VX7B 3UKRD 2XGAA 4JD2F 4JMFB 1K8KD 1TTWA 3RSEF 3UKUD 2P9KD 3DXKF 1S28A 1K3SA 2P9ND 2P9PF 2P9IF 2LPUA 4H5BA 3TU3A 3ULEF 3ULED 2DYTA 1TYQD 2MQDA 2P9LF 1XKPB 2P9UD 4XEID 1U2VD 3DWLD 1K8KF 3UKRF 3UKUF 2KC5A 1K6ZA 2P9KF 3VX8B 1JYAA 1K3EA 2P9NF 3CXJA 4EBRA 3EPUA 1XKPC 2BSHA 2FM8A 2P9SD 4GF3A 1RY9A 3DXMD 4JD2D 1TYQF 3RSED 3DWLF 4AKXA 1L2WA 2P9UF 1U2VF 2P9PD 3DXKD 4XEIF 1N5BA 2PLGA 2BSJA 4GSLC 2P9ID 2BSIA 2BHOA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2P9L D;  2P9S F;  3DXM F;  3UKR D;  4JD2 F;  1K8K D;  3RSE F;  3UKU D;  2P9K D;  3DXK F;  2P9P F;  2P9N D;  2P9I F;  3ULE F;  1TYQ D;  2P9L F;  2P9U D;  4XEI D;  1U2V D;  3DWL D;  1K8K F;  3UKR F;  3UKU F;  2P9K F;  2P9N F;  2P9S D;  3DXM D;  4JD2 D;  1TYQ F;  3RSE D;  3DWL F;  2P9U F;  3DXK D;  1U2V F;  2P9P D;  4XEI F;  2P9I D;  3ULE D; 
#chains in the Genus database with same CATH topology
 2P9L D;  2P9S F;  1JYO A;  3DXM F;  3KXY A;  4G6T A;  3VX7 B;  3UKR D;  2XGA A;  4JD2 F;  4JMF B;  1K8K D;  1TTW A;  3RSE F;  3UKU D;  2P9K D;  3DXK F;  1S28 A;  1K3S A;  2P9N D;  2P9P F;  2P9I F;  2LPU A;  4H5B A;  3TU3 A;  3ULE F;  2OD0 A;  3ULE D;  2DYT A;  1TYQ D;  2MQD A;  2P9L F;  1XKP B;  2P9U D;  4XEI D;  1U2V D;  3DWL D;  1K8K F;  3UKR F;  3UKU F;  2KC5 A;  1K6Z A;  2P9K F;  3VX8 B;  1JYA A;  1K3E A;  2P9N F;  3CXJ A;  4EBR A;  3EPU A;  1XKP C;  2BSH A;  2FM8 A;  2P9S D;  4GF3 A;  1RY9 A;  3DXM D;  4JD2 D;  1TYQ F;  3RSE D;  3DWL F;  4AKX A;  1L2W A;  2P9U F;  1U2V F;  2P9P D;  3DXK D;  4XEI F;  1N5B A;  2PLG A;  2BSJ A;  4GSL C;  2P9I D;  2BSI A;  2BHO A; 
#chains in the Genus database with same CATH homology
 2P9L D;  2P9S F;  1JYO A;  3DXM F;  3KXY A;  4G6T A;  3VX7 B;  3UKR D;  2XGA A;  4JD2 F;  4JMF B;  1K8K D;  1TTW A;  3RSE F;  3UKU D;  2P9K D;  3DXK F;  1S28 A;  1K3S A;  2P9N D;  2P9P F;  2P9I F;  2LPU A;  4H5B A;  3TU3 A;  3ULE F;  3ULE D;  2DYT A;  1TYQ D;  2MQD A;  2P9L F;  1XKP B;  2P9U D;  4XEI D;  1U2V D;  3DWL D;  1K8K F;  3UKR F;  3UKU F;  2KC5 A;  1K6Z A;  2P9K F;  3VX8 B;  1JYA A;  1K3E A;  2P9N F;  3CXJ A;  4EBR A;  3EPU A;  1XKP C;  2BSH A;  2FM8 A;  2P9S D;  4GF3 A;  1RY9 A;  3DXM D;  4JD2 D;  1TYQ F;  3RSE D;  3DWL F;  4AKX A;  1L2W A;  2P9U F;  1U2V F;  2P9P D;  3DXK D;  4XEI F;  1N5B A;  2PLG A;  2BSJ A;  4GSL C;  2P9I D;  2BSI A;  2BHO A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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