3ULTA

Crystal structure of an ice-binding protein from the perennial ryegrass, lolium perenne
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
114
structure length
114
Chain Sequence
PNTISGSNNTVRSGSKNVLAGNDNTVISGDNNSVSGSNNTVVSGNDNTVTGSNHVVSGTNHIVTDNNNNVSGNDNNVSGSFHTVSGGHNTVSGSNNTVSGSNHVVSGSNKVVTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ice recrystallization inhibition protein-like protein
publication title Antifreeze protein from freeze-tolerant grass has a beta-roll fold with an irregularly structured ice-binding site.
pubmed doi rcsb
source organism Lolium perenne
molecule tags Antifreeze protein
total genus 56
structure length 114
sequence length 114
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 3ultA00
3NTNA 3WP8A 3LA9A 1OM7A 2ZJ7A 3HB2P 5D7WA 5CVWA 2Z8XA 2YO0A 3VI1A 1GO8P 2ZJ6A 1OMJA 2Z8ZA 1OM8A 1K7QA 2QUAA 3A70A 3LAAA 1AF0A 1AKLA 1OM6A 1O0QA 2AGMA 1G9KA 2YO1A 3HDAP 3S6LA 3A6ZA 2QUBA 1P9HA 3U1RA 2XQHA 2ZVDA 3HBVP 1SRPA 1KAPP 5CXLA 1K7GA 3HBUP 1SMPA 1SATA 1O0TA 1H71P 4I35A 2ML2A 1K7IA 3ULTA 1JIWP 1GO7P
chains in the Genus database with same CATH superfamily
3NTNA 3WP8A 3LA9A 1OM7A 2ZJ7A 3HB2P 5D7WA 5CVWA 2Z8XA 2YO0A 3VI1A 1GO8P 2ZJ6A 1OMJA 2Z8ZA 1OM8A 1K7QA 2QUAA 3A70A 3LAAA 1AF0A 1AKLA 1OM6A 1O0QA 2AGMA 1G9KA 2YO1A 3HDAP 3S6LA 3A6ZA 2QUBA 1P9HA 3U1RA 2XQHA 2ZVDA 3HBVP 1SRPA 1KAPP 5CXLA 4DT5A 1K7GA 3HBUP 1SMPA 1SATA 1O0TA 1H71P 4I35A 2ML2A 1K7IA 3ULTA 1JIWP 1GO7P
chains in the Genus database with same CATH topology
3NTNA 3WP8A 3LA9A 1OM7A 2ZJ7A 3HB2P 5D7WA 5CVWA 2Z8XA 2YO0A 3VI1A 1GO8P 2ZJ6A 1OMJA 2Z8ZA 1OM8A 1K7QA 2QUAA 3A70A 3LAAA 1AF0A 1AKLA 1OM6A 1O0QA 2AGMA 1G9KA 2YO1A 3HDAP 3S6LA 3A6ZA 2QUBA 1P9HA 3U1RA 2XQHA 2ZVDA 3HBVP 1SRPA 1KAPP 5CXLA 1K7GA 3HBUP 1SMPA 1SATA 1O0TA 1H71P 4I35A 2ML2A 1K7IA 3ULTA 1JIWP 1GO7P
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3NTN A;  3WP8 A;  3LA9 A;  1OM7 A;  2ZJ7 A;  3HB2 P;  5D7W A;  5CVW A;  2Z8X A;  2YO0 A;  3VI1 A;  1GO8 P;  2ZJ6 A;  1OMJ A;  2Z8Z A;  1OM8 A;  1K7Q A;  2QUA A;  3A70 A;  3LAA A;  1AF0 A;  1AKL A;  1OM6 A;  1O0Q A;  2AGM A;  1G9K A;  2YO1 A;  3HDA P;  3S6L A;  3A6Z A;  2QUB A;  1P9H A;  3U1R A;  2XQH A;  2ZVD A;  3HBV P;  1SRP A;  1KAP P;  5CXL A;  1K7G A;  3HBU P;  1SMP A;  1SAT A;  1O0T A;  1H71 P;  4I35 A;  2ML2 A;  1K7I A;  3ULT A;  1JIW P;  1GO7 P; 
#chains in the Genus database with same CATH topology
 3NTN A;  3WP8 A;  3LA9 A;  1OM7 A;  2ZJ7 A;  3HB2 P;  5D7W A;  5CVW A;  2Z8X A;  2YO0 A;  3VI1 A;  1GO8 P;  2ZJ6 A;  1OMJ A;  2Z8Z A;  1OM8 A;  1K7Q A;  2QUA A;  3A70 A;  3LAA A;  1AF0 A;  1AKL A;  1OM6 A;  1O0Q A;  2AGM A;  1G9K A;  2YO1 A;  3HDA P;  3S6L A;  3A6Z A;  2QUB A;  1P9H A;  3U1R A;  2XQH A;  2ZVD A;  3HBV P;  1SRP A;  1KAP P;  5CXL A;  4DT5 A;  1K7G A;  3HBU P;  1SMP A;  1SAT A;  1O0T A;  1H71 P;  4I35 A;  2ML2 A;  1K7I A;  3ULT A;  1JIW P;  1GO7 P; 
#chains in the Genus database with same CATH homology
 3NTN A;  3WP8 A;  3LA9 A;  1OM7 A;  2ZJ7 A;  3HB2 P;  5D7W A;  5CVW A;  2Z8X A;  2YO0 A;  3VI1 A;  1GO8 P;  2ZJ6 A;  1OMJ A;  2Z8Z A;  1OM8 A;  1K7Q A;  2QUA A;  3A70 A;  3LAA A;  1AF0 A;  1AKL A;  1OM6 A;  1O0Q A;  2AGM A;  1G9K A;  2YO1 A;  3HDA P;  3S6L A;  3A6Z A;  2QUB A;  1P9H A;  3U1R A;  2XQH A;  2ZVD A;  3HBV P;  1SRP A;  1KAP P;  5CXL A;  1K7G A;  3HBU P;  1SMP A;  1SAT A;  1O0T A;  1H71 P;  4I35 A;  2ML2 A;  1K7I A;  3ULT A;  1JIW P;  1GO7 P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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