3ULTA

Crystal structure of an ice-binding protein from the perennial ryegrass, lolium perenne
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
114
structure length
114
Chain Sequence
PNTISGSNNTVRSGSKNVLAGNDNTVISGDNNSVSGSNNTVVSGNDNTVTGSNHVVSGTNHIVTDNNNNVSGNDNNVSGSFHTVSGGHNTVSGSNNTVSGSNHVVSGSNKVVTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords Ice recrystallization inhibition protein-like protein
publication title Antifreeze protein from freeze-tolerant grass has a beta-roll fold with an irregularly structured ice-binding site.
pubmed doi rcsb
source organism Lolium perenne
molecule tags Antifreeze protein
total genus 56
structure length 114
sequence length 114
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 3ultA00
3S6LA 1GO7P 2Z8ZA 2QUBA 2YO1A 3ULTA 3A6ZA 1OMJA 2ZJ7A 3LAAA 1SATA 1AF0A 1H71P 1OM8A 3HB2P 3VI1A 1SRPA 2AGMA 2ML2A 3LA9A 4I35A 1K7GA 3U1RA 1P9HA 3WP8A 2ZVDA 1O0QA 1GO8P 1O0TA 2YO0A 3A70A 1K7QA 1AKLA 2Z8XA 1G9KA 3HBVP 5D7WA 1SMPA 2XQHA 1KAPP 2QUAA 3NTNA 1JIWP 1OM6A 2ZJ6A 1OM7A 3HBUP 5CVWA 3HDAP 1K7IA 5CXLA
chains in the Genus database with same CATH superfamily
3S6LA 1GO7P 2Z8ZA 2QUBA 2YO1A 3ULTA 3A6ZA 1OMJA 2ZJ7A 3LAAA 1SATA 1AF0A 1H71P 1OM8A 3HB2P 3VI1A 1SRPA 2AGMA 2ML2A 3LA9A 4I35A 1K7GA 3U1RA 1P9HA 3WP8A 2ZVDA 1O0QA 1GO8P 1O0TA 2YO0A 3A70A 1K7QA 1AKLA 2Z8XA 1G9KA 3HBVP 5D7WA 1SMPA 4DT5A 2XQHA 1KAPP 2QUAA 3NTNA 1JIWP 1OM6A 2ZJ6A 1OM7A 3HBUP 5CVWA 3HDAP 1K7IA 5CXLA
chains in the Genus database with same CATH topology
3S6LA 1GO7P 2Z8ZA 2QUBA 2YO1A 3ULTA 3A6ZA 1OMJA 2ZJ7A 3LAAA 1SATA 1AF0A 1H71P 1OM8A 3HB2P 3VI1A 1SRPA 2AGMA 2ML2A 3LA9A 4I35A 1K7GA 3U1RA 1P9HA 3WP8A 2ZVDA 1O0QA 1GO8P 1O0TA 2YO0A 3A70A 1K7QA 1AKLA 2Z8XA 1G9KA 3HBVP 5D7WA 1SMPA 2XQHA 1KAPP 2QUAA 3NTNA 1JIWP 1OM6A 2ZJ6A 1OM7A 3HBUP 5CVWA 3HDAP 1K7IA 5CXLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3S6L A;  1GO7 P;  2Z8Z A;  2QUB A;  2YO1 A;  3ULT A;  3A6Z A;  1OMJ A;  2ZJ7 A;  3LAA A;  1SAT A;  1AF0 A;  1H71 P;  1OM8 A;  3HB2 P;  3VI1 A;  1SRP A;  2AGM A;  2ML2 A;  3LA9 A;  4I35 A;  1K7G A;  3U1R A;  1P9H A;  3WP8 A;  2ZVD A;  1O0Q A;  1GO8 P;  1O0T A;  2YO0 A;  3A70 A;  1K7Q A;  1AKL A;  2Z8X A;  1G9K A;  3HBV P;  5D7W A;  1SMP A;  2XQH A;  1KAP P;  2QUA A;  3NTN A;  1JIW P;  1OM6 A;  2ZJ6 A;  1OM7 A;  3HBU P;  5CVW A;  3HDA P;  1K7I A;  5CXL A; 
#chains in the Genus database with same CATH topology
 3S6L A;  1GO7 P;  2Z8Z A;  2QUB A;  2YO1 A;  3ULT A;  3A6Z A;  1OMJ A;  2ZJ7 A;  3LAA A;  1SAT A;  1AF0 A;  1H71 P;  1OM8 A;  3HB2 P;  3VI1 A;  1SRP A;  2AGM A;  2ML2 A;  3LA9 A;  4I35 A;  1K7G A;  3U1R A;  1P9H A;  3WP8 A;  2ZVD A;  1O0Q A;  1GO8 P;  1O0T A;  2YO0 A;  3A70 A;  1K7Q A;  1AKL A;  2Z8X A;  1G9K A;  3HBV P;  5D7W A;  1SMP A;  4DT5 A;  2XQH A;  1KAP P;  2QUA A;  3NTN A;  1JIW P;  1OM6 A;  2ZJ6 A;  1OM7 A;  3HBU P;  5CVW A;  3HDA P;  1K7I A;  5CXL A; 
#chains in the Genus database with same CATH homology
 3S6L A;  1GO7 P;  2Z8Z A;  2QUB A;  2YO1 A;  3ULT A;  3A6Z A;  1OMJ A;  2ZJ7 A;  3LAA A;  1SAT A;  1AF0 A;  1H71 P;  1OM8 A;  3HB2 P;  3VI1 A;  1SRP A;  2AGM A;  2ML2 A;  3LA9 A;  4I35 A;  1K7G A;  3U1R A;  1P9H A;  3WP8 A;  2ZVD A;  1O0Q A;  1GO8 P;  1O0T A;  2YO0 A;  3A70 A;  1K7Q A;  1AKL A;  2Z8X A;  1G9K A;  3HBV P;  5D7W A;  1SMP A;  2XQH A;  1KAP P;  2QUA A;  3NTN A;  1JIW P;  1OM6 A;  2ZJ6 A;  1OM7 A;  3HBU P;  5CVW A;  3HDA P;  1K7I A;  5CXL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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