3ULTA

Crystal structure of an ice-binding protein from the perennial ryegrass, lolium perenne
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
114
structure length
114
Chain Sequence
PNTISGSNNTVRSGSKNVLAGNDNTVISGDNNSVSGSNNTVVSGNDNTVTGSNHVVSGTNHIVTDNNNNVSGNDNNVSGSFHTVSGGHNTVSGSNNTVSGSNHVVSGSNKVVTD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Antifreeze protein
molecule keywords Ice recrystallization inhibition protein-like protein
publication title Antifreeze protein from freeze-tolerant grass has a beta-roll fold with an irregularly structured ice-binding site.
pubmed doi rcsb
source organism Lolium perenne
total genus 56
structure length 114
sequence length 114
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-11
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.150.10.10 Mainly Beta 2 Solenoid Alkaline Protease, subunit P, domain 1 Serralysin-like metalloprotease, C-terminal 3ultA00
3U1RA 2Z8XA 2ZVDA 1SRPA 3WP8A 3HDAP 2YO0A 1GO8P 2XQHA 1OM7A 3S6LA 2QUBA 1K7IA 3LA9A 1GO7P 3A6ZA 1SATA 1H71P 1O0TA 3HBVP 2ML2A 1AF0A 3HBUP 3LAAA 1G9KA 1P9HA 1O0QA 3HB2P 3NTNA 1K7GA 5CVWA 2ZJ7A 2QUAA 4I35A 3ULTA 1OM6A 1OMJA 5CXLA 2YO1A 2Z8ZA 5D7WA 1AKLA 1OM8A 1K7QA 1SMPA 2AGMA 2ZJ6A 3VI1A 3A70A 1JIWP 1KAPP
chains in the Genus database with same CATH superfamily
3U1RA 2Z8XA 2ZVDA 1SRPA 3WP8A 3HDAP 2YO0A 1GO8P 4DT5A 2XQHA 1OM7A 3S6LA 2QUBA 1K7IA 3LA9A 1GO7P 3A6ZA 1SATA 1H71P 1O0TA 3HBVP 2ML2A 1AF0A 3HBUP 3LAAA 1G9KA 1P9HA 1O0QA 3HB2P 3NTNA 1K7GA 5CVWA 2ZJ7A 2QUAA 4I35A 3ULTA 1OM6A 1OMJA 5CXLA 2YO1A 2Z8ZA 5D7WA 1AKLA 1OM8A 1K7QA 1SMPA 2AGMA 2ZJ6A 3VI1A 3A70A 1JIWP 1KAPP
chains in the Genus database with same CATH topology
3U1RA 2Z8XA 2ZVDA 1SRPA 3WP8A 3HDAP 2YO0A 1GO8P 2XQHA 1OM7A 3S6LA 2QUBA 1K7IA 3LA9A 1GO7P 3A6ZA 1SATA 1H71P 1O0TA 3HBVP 2ML2A 1AF0A 3HBUP 3LAAA 1G9KA 1P9HA 1O0QA 3HB2P 3NTNA 1K7GA 5CVWA 2ZJ7A 2QUAA 4I35A 3ULTA 1OM6A 1OMJA 5CXLA 2YO1A 2Z8ZA 5D7WA 1AKLA 1OM8A 1K7QA 1SMPA 2AGMA 2ZJ6A 3VI1A 3A70A 1JIWP 1KAPP
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3U1R A;  2Z8X A;  2ZVD A;  1SRP A;  3WP8 A;  3HDA P;  2YO0 A;  1GO8 P;  2XQH A;  1OM7 A;  3S6L A;  2QUB A;  1K7I A;  3LA9 A;  1GO7 P;  3A6Z A;  1SAT A;  1H71 P;  1O0T A;  3HBV P;  2ML2 A;  1AF0 A;  3HBU P;  3LAA A;  1G9K A;  1P9H A;  1O0Q A;  3HB2 P;  3NTN A;  1K7G A;  5CVW A;  2ZJ7 A;  2QUA A;  4I35 A;  3ULT A;  1OM6 A;  1OMJ A;  5CXL A;  2YO1 A;  2Z8Z A;  5D7W A;  1AKL A;  1OM8 A;  1K7Q A;  1SMP A;  2AGM A;  2ZJ6 A;  3VI1 A;  3A70 A;  1JIW P;  1KAP P; 
#chains in the Genus database with same CATH topology
 3U1R A;  2Z8X A;  2ZVD A;  1SRP A;  3WP8 A;  3HDA P;  2YO0 A;  1GO8 P;  4DT5 A;  2XQH A;  1OM7 A;  3S6L A;  2QUB A;  1K7I A;  3LA9 A;  1GO7 P;  3A6Z A;  1SAT A;  1H71 P;  1O0T A;  3HBV P;  2ML2 A;  1AF0 A;  3HBU P;  3LAA A;  1G9K A;  1P9H A;  1O0Q A;  3HB2 P;  3NTN A;  1K7G A;  5CVW A;  2ZJ7 A;  2QUA A;  4I35 A;  3ULT A;  1OM6 A;  1OMJ A;  5CXL A;  2YO1 A;  2Z8Z A;  5D7W A;  1AKL A;  1OM8 A;  1K7Q A;  1SMP A;  2AGM A;  2ZJ6 A;  3VI1 A;  3A70 A;  1JIW P;  1KAP P; 
#chains in the Genus database with same CATH homology
 3U1R A;  2Z8X A;  2ZVD A;  1SRP A;  3WP8 A;  3HDA P;  2YO0 A;  1GO8 P;  2XQH A;  1OM7 A;  3S6L A;  2QUB A;  1K7I A;  3LA9 A;  1GO7 P;  3A6Z A;  1SAT A;  1H71 P;  1O0T A;  3HBV P;  2ML2 A;  1AF0 A;  3HBU P;  3LAA A;  1G9K A;  1P9H A;  1O0Q A;  3HB2 P;  3NTN A;  1K7G A;  5CVW A;  2ZJ7 A;  2QUA A;  4I35 A;  3ULT A;  1OM6 A;  1OMJ A;  5CXL A;  2YO1 A;  2Z8Z A;  5D7W A;  1AKL A;  1OM8 A;  1K7Q A;  1SMP A;  2AGM A;  2ZJ6 A;  3VI1 A;  3A70 A;  1JIW P;  1KAP P; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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