3UN0A

Crystal structure of mdc1 fha domain
Total Genus 22
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
22
sequence length
109
structure length
109
Chain Sequence
CNVEPVGRLHIFSGAHGPEKDFPLHLGKNVVGRMPDCSVALPFPSISKQHAEIEILAWDKAPILRDCGSLNGTQILRPPKVLSPGVSHRLRDQELILFADLLCQYHRLD
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Cell cycle
molecule keywords Mediator of DNA damage checkpoint protein 1
publication title The molecular basis of ATM-dependent dimerization of the Mdc1 DNA damage checkpoint mediator.
pubmed doi rcsb
source organism Homo sapiens
total genus 22
structure length 109
sequence length 109
chains with identical sequence B
ec nomenclature
pdb deposition date 2011-11-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00498 FHA FHA domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.60.200.20 Mainly Beta Sandwich Tumour Suppressor Smad4 Tumour Suppressor Smad4 3un0A00
3ELSA 3KT9A 3VPYA 1UHTA 2XT9B 2KFUA 2JPEA 2A0TA 1J4KA 3I6UA 4H87A 1WV3A 3OUNA 1LGQA 2CSWA 1J4PA 1WLNA 1K3QA 2LC1A 3UNMA 1FHQA 1J4QA 4EJQA 1DMZA 1K3JA 3UV0A 1K3NA 1R21A 2JQLA 3VA1A 4QCJA 2KB4A 2JQJA 3HX1A 1YJ5C 2G1LA 1UJXA 3MDBA 3POAA 2JKDA 4EGXA 2KB3A 2JQIA 1GXCA 1YJMA 3UMZA 4D9VA 4G2SA 2AFFA 2BRFA 3I0MA 3I0NA 5DJOA 3PO8A 1K2NA 3UN0A 1LGPA 3VA4A 4A0EA 3UNNA 5A8IA 3GQSA 3FM8A 1QU5A 1J4OA 1G6GA 2FEZA 2W3OA 3I6WA 3UOTA 2KKLA 3ELVA 4JONA 1G3GA 2PIEA 3HUEA 3HUFA 1J4LA 5E50A 2EH0A 1FHRA 1K2MA 2FF4A 1MZKA
chains in the Genus database with same CATH superfamily
3ELSA 3V8PA 3DITA 4V24A 3KT9A 3VPYA 1UHTA 2XT9B 3V7YA 2KFUA 3AFOA 3V8RA 5JEKA 2JPEA 3A77A 1U7FA 4DY6A 5DHUA 1U7VB 5DHSA 1U0RA 4KU0D 2A0TA 5EJIA 1J4KA 2I1WA 1DEVA 3I6UA 1MR1A 4H87A 1WV3A 3V8MA 3OUNA 1LGQA 2I2DA 2I2FA 2Q5FA 2CSWA 5JEMA 3DSHA 4R9PA 1J4PA 1YGSA 1WLNA 1K3QA 1KHXA 2LC1A 3V7WA 2QVLA 2I2CA 1DD1A 5EJHA 4JIVD 3VZBA 3UNMA 1Y3IA 1FHQA 1J4QA 4EJQA 5DHRA 1G88A 1DMZA 3T5PA 1K3JA 1U7FB 4HAOA 3UV0A 1R21A 1K3NA 2JQLA 4WERA 3VA1A 4A4YA 4QCJA 2KB4A 1YT5A 2JQJA 3HX1A 5EJFA 1Z0ZA 1YJ5C 1Z0SA 2G1LA 1UJXA 3MDBA 1U0TA 4JIWD 3POAA 2JKDA 5DHTA 1Y3HA 4EGXA 1Z0UA 5BVIA 1MJSA 2KB3A 3V8QA 2AN1A 2JQIA 1GXCA 1YJMA 2XXSA 3UMZA 4G2SA 3V7UA 4D9VA 3PFNA 3V80A 2AFFA 1J2FA 4WRRA 2BRFA 3I0MA 3I0NA 2BONA 5DJOA 1QWTA 2QV7A 3PO8A 5JEOA 1K2NA 3UN0A 1LGPA 5EJGA 3VA4A 4A0EA 3UNNA 2I2AA 5A8IA 3GQSA 3GMJA 2P1RA 3FM8A 1KHUA 5DHPA 2I29A 1QU5A 3V8NA 3VZCA 1J4OA 1G6GA 2JGRA 2FEZA 2W3OA 1U7VA 5JERA 3I6WA 5C4VA 3UOTA 3VZDA 2I2BA 2KKLA 1ZOQA 1SUWA 4L02A 5JEJA 3ELVA 4JONA 5JELA 1G3GA 2PIEA 3HUEA 3HUFA 1MK2A 1J4LA 5DHQA 5E50A 2EH0A 1FHRA 1K2MA 3S40A 2FF4A 1MZKA
chains in the Genus database with same CATH topology
3ELSA 3DITA 4V24A 3KT9A 3VPYA 1UHTA 2XT9B 2KFUA 5JEKA 2JPEA 3A77A 1U7FA 1U7VB 4KU0D 2A0TA 1J4KA 3I6UA 1DEVA 1MR1A 4H87A 1WV3A 3OUNA 1LGQA 2CSWA 5JEMA 3DSHA 4R9PA 1J4PA 1YGSA 1WLNA 1K3QA 1KHXA 2LC1A 2QVLA 1DD1A 4JIVD 3VZBA 3UNMA 1FHQA 1J4QA 4EJQA 1G88A 1DMZA 3T5PA 1K3JA 1U7FB 3UV0A 1K3NA 1R21A 2JQLA 4WERA 3VA1A 4A4YA 4QCJA 2KB4A 2JQJA 3HX1A 1YJ5C 2G1LA 1UJXA 3MDBA 4JIWD 3POAA 2JKDA 4EGXA 5BVIA 1MJSA 2KB3A 2JQIA 1GXCA 1YJMA 2XXSA 3UMZA 4G2SA 4D9VA 2AFFA 1J2FA 4WRRA 2BRFA 3I0MA 3I0NA 2BONA 5DJOA 1QWTA 2QV7A 3PO8A 5JEOA 1K2NA 3UN0A 1LGPA 3VA4A 4A0EA 3UNNA 5A8IA 3GQSA 3GMJA 3FM8A 2P1RA 1KHUA 1QU5A 3VZCA 1J4OA 1G6GA 2JGRA 2FEZA 2W3OA 1U7VA 5JERA 3I6WA 5C4VA 3UOTA 3VZDA 2KKLA 1ZOQA 4L02A 5JEJA 3ELVA 4JONA 5JELA 1G3GA 2PIEA 3HUEA 3HUFA 1MK2A 1J4LA 5E50A 2EH0A 1FHRA 1K2MA 3S40A 2FF4A 1MZKA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ELS A;  3KT9 A;  3VPY A;  1UHT A;  2XT9 B;  2KFU A;  2JPE A;  2A0T A;  1J4K A;  3I6U A;  4H87 A;  1WV3 A;  3OUN A;  1LGQ A;  2CSW A;  1J4P A;  1WLN A;  1K3Q A;  2LC1 A;  3UNM A;  1FHQ A;  1J4Q A;  4EJQ A;  1DMZ A;  1K3J A;  3UV0 A;  1K3N A;  1R21 A;  2JQL A;  3VA1 A;  4QCJ A;  2KB4 A;  2JQJ A;  3HX1 A;  1YJ5 C;  2G1L A;  1UJX A;  3MDB A;  3POA A;  2JKD A;  4EGX A;  2KB3 A;  2JQI A;  1GXC A;  1YJM A;  3UMZ A;  4D9V A;  4G2S A;  2AFF A;  2BRF A;  3I0M A;  3I0N A;  5DJO A;  3PO8 A;  1K2N A;  3UN0 A;  1LGP A;  3VA4 A;  4A0E A;  3UNN A;  5A8I A;  3GQS A;  3FM8 A;  1QU5 A;  1J4O A;  1G6G A;  2FEZ A;  2W3O A;  3I6W A;  3UOT A;  2KKL A;  3ELV A;  4JON A;  1G3G A;  2PIE A;  3HUE A;  3HUF A;  1J4L A;  5E50 A;  2EH0 A;  1FHR A;  1K2M A;  2FF4 A;  1MZK A; 
#chains in the Genus database with same CATH topology
 3ELS A;  3V8P A;  3DIT A;  4V24 A;  3KT9 A;  3VPY A;  1UHT A;  2XT9 B;  3V7Y A;  2KFU A;  3AFO A;  3V8R A;  5JEK A;  2JPE A;  3A77 A;  1U7F A;  4DY6 A;  5DHU A;  1U7V B;  5DHS A;  1U0R A;  4KU0 D;  2A0T A;  5EJI A;  1J4K A;  2I1W A;  1DEV A;  3I6U A;  1MR1 A;  4H87 A;  1WV3 A;  3V8M A;  3OUN A;  1LGQ A;  2I2D A;  2I2F A;  2Q5F A;  2CSW A;  5JEM A;  3DSH A;  4R9P A;  1J4P A;  1YGS A;  1WLN A;  1K3Q A;  1KHX A;  2LC1 A;  3V7W A;  2QVL A;  2I2C A;  1DD1 A;  5EJH A;  4JIV D;  3VZB A;  3UNM A;  1Y3I A;  1FHQ A;  1J4Q A;  4EJQ A;  5DHR A;  1G88 A;  1DMZ A;  3T5P A;  1K3J A;  1U7F B;  4HAO A;  3UV0 A;  1R21 A;  1K3N A;  2JQL A;  4WER A;  3VA1 A;  4A4Y A;  4QCJ A;  2KB4 A;  1YT5 A;  2JQJ A;  3HX1 A;  5EJF A;  1Z0Z A;  1YJ5 C;  1Z0S A;  2G1L A;  1UJX A;  3MDB A;  1U0T A;  4JIW D;  3POA A;  2JKD A;  5DHT A;  1Y3H A;  4EGX A;  1Z0U A;  5BVI A;  1MJS A;  2KB3 A;  3V8Q A;  2AN1 A;  2JQI A;  1GXC A;  1YJM A;  2XXS A;  3UMZ A;  4G2S A;  3V7U A;  4D9V A;  3PFN A;  3V80 A;  2AFF A;  1J2F A;  4WRR A;  2BRF A;  3I0M A;  3I0N A;  2BON A;  5DJO A;  1QWT A;  2QV7 A;  3PO8 A;  5JEO A;  1K2N A;  3UN0 A;  1LGP A;  5EJG A;  3VA4 A;  4A0E A;  3UNN A;  2I2A A;  5A8I A;  3GQS A;  3GMJ A;  2P1R A;  3FM8 A;  1KHU A;  5DHP A;  2I29 A;  1QU5 A;  3V8N A;  3VZC A;  1J4O A;  1G6G A;  2JGR A;  2FEZ A;  2W3O A;  1U7V A;  5JER A;  3I6W A;  5C4V A;  3UOT A;  3VZD A;  2I2B A;  2KKL A;  1ZOQ A;  1SUW A;  4L02 A;  5JEJ A;  3ELV A;  4JON A;  5JEL A;  1G3G A;  2PIE A;  3HUE A;  3HUF A;  1MK2 A;  1J4L A;  5DHQ A;  5E50 A;  2EH0 A;  1FHR A;  1K2M A;  3S40 A;  2FF4 A;  1MZK A; 
#chains in the Genus database with same CATH homology
 3ELS A;  3DIT A;  4V24 A;  3KT9 A;  3VPY A;  1UHT A;  2XT9 B;  2KFU A;  5JEK A;  2JPE A;  3A77 A;  1U7F A;  1U7V B;  4KU0 D;  2A0T A;  1J4K A;  3I6U A;  1DEV A;  1MR1 A;  4H87 A;  1WV3 A;  3OUN A;  1LGQ A;  2CSW A;  5JEM A;  3DSH A;  4R9P A;  1J4P A;  1YGS A;  1WLN A;  1K3Q A;  1KHX A;  2LC1 A;  2QVL A;  1DD1 A;  4JIV D;  3VZB A;  3UNM A;  1FHQ A;  1J4Q A;  4EJQ A;  1G88 A;  1DMZ A;  3T5P A;  1K3J A;  1U7F B;  3UV0 A;  1K3N A;  1R21 A;  2JQL A;  4WER A;  3VA1 A;  4A4Y A;  4QCJ A;  2KB4 A;  2JQJ A;  3HX1 A;  1YJ5 C;  2G1L A;  1UJX A;  3MDB A;  4JIW D;  3POA A;  2JKD A;  4EGX A;  5BVI A;  1MJS A;  2KB3 A;  2JQI A;  1GXC A;  1YJM A;  2XXS A;  3UMZ A;  4G2S A;  4D9V A;  2AFF A;  1J2F A;  4WRR A;  2BRF A;  3I0M A;  3I0N A;  2BON A;  5DJO A;  1QWT A;  2QV7 A;  3PO8 A;  5JEO A;  1K2N A;  3UN0 A;  1LGP A;  3VA4 A;  4A0E A;  3UNN A;  5A8I A;  3GQS A;  3GMJ A;  3FM8 A;  2P1R A;  1KHU A;  1QU5 A;  3VZC A;  1J4O A;  1G6G A;  2JGR A;  2FEZ A;  2W3O A;  1U7V A;  5JER A;  3I6W A;  5C4V A;  3UOT A;  3VZD A;  2KKL A;  1ZOQ A;  4L02 A;  5JEJ A;  3ELV A;  4JON A;  5JEL A;  1G3G A;  2PIE A;  3HUE A;  3HUF A;  1MK2 A;  1J4L A;  5E50 A;  2EH0 A;  1FHR A;  1K2M A;  3S40 A;  2FF4 A;  1MZK A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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