3UPGA

Loop deletion mutant of salmonella typhi osmoporin (ompc):an outer membrane protein.
Total Genus 64
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
338
structure length
311
Chain Sequence
AEIYNKDGNKLDLFGKVDGLHYFSDDKGSDGDQTYMRIGFKGETQVNDQLTGYGQWEYQIQGNQTEGSNDSWTRVAFAGLKFADAGSFDYGRNYGVTYDVTSWTDVLPEFGGDTYGADNFMQQRGNGYATYRNTDFFGLVDGLDFALQYQGKGDGYGGSLTYAIGEGFSVGGAITTSKATVYTGGLKYDANNIYLAAQYSQTYNATRFGTSGFANKAQNFEVVAQYQFDFGLRPSVAYLQSKGKDISNGYGASYGDQDIVKYVDVGATYYFNKNMSTYVDYKINLLDKNDFTRDAGINTDDIVALGLVYQF
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal structure of osmoporin (OmpC) loop deletion mutant: an Outer membrane protein from Salmonella typhi.
rcsb
molecule tags Membrane protein
source organism Salmonella enterica subsp. enterica serovar typhimurium
molecule keywords Outer membrane protein C
total genus 64
structure length 311
sequence length 338
ec nomenclature
pdb deposition date 2011-11-18

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00267 Porin_1 Gram-negative porin
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.160.10 Mainly Beta Beta Barrel Porin Porin 3upgA00
2Y0LA 1E54A 3SZVA 4KRAA 2XE3A 5DL8A 5DL5A 2XE1A 4LSIA 3EMNX 3VZTX 1HXUA 4FMSA 3POQA 3UU2A 4FRTA 2O4VA 4AUIA 3POUA 3PRNA 1MPFA 8PRNA 3O0EA 2J1NA 5DL6A 3WI5A 4D5UA 2Y0HA 2XG6A 4RJXA 6PRNA 2K4TA 4JFBA 4D64A 3SY7A 2Y0KA 3UPGA 3HWBA 3SYSA 3T24A 1PRNA 4GCQA 3FYXA 2Y2XA 1GFMA 1H6S1 3PORA 4FSOA 2FGRA 4LSFA 3VZWX 4C69X 1GFNA 4FSPA 2PORA 2ZFGA 2ODJA 2PRNA 3HW9A 5JDPA 3NSGA 4FRXA 1GFPA 5DL7A 4FOZA 1GFQA 3K19A 3SYBA 4LSHA 4GCSA 3VY9X 3VZUX 1PHOA 3SZDA 3JTYA 4RJWA 7PRNA 3POXA 1BH3A 2ZLDA 4D65A 4LSEA 1HXTA 2OMFA 1OSMA 5PRNA 3T0SA 4BUMX 2XE5A 2J4UP 1GFOA 2FGQX 4KR8A 3A2SX 5FVNA 4GCPA 1BT9A 3VY8X 3T20A 1HXXA 4FT6A 2QTKA 3WI4A 4KR4A 2XE2A 3SY9A 1OPFA
chains in the Genus database with same CATH superfamily
4O49A 2Y0LA 4AZLA 4AYDC 1E54A 3SZVA 4C4VA 4O4UA 4KRAA 3AA7A 2XE3A 2X9KA 1T16A 5DL8A 2YPVA 1ZHYA 3AA1A 3GP6A 4FZMA 4PUXA 2XE1A 5DL5A 4JCHA 2K0LA 2WJRA 3HOLA 3BRZA 5B5EO 4QQ1A 4LSIA 3LK42 2Y7SA 4AYID 2LFUA 3C5OA 3EMNX 4Z3TA 4F4BA 3VE2A 5G26A 2R4LA 3BS0A 3VZTX 1HXUA 2LHFA 4FMSA 3POQA 3QRCA 4FQEA 5D5DA 4FRTA 2F1CX 3UAQA 2ERVA 2R89A 3UU2A 2YNKA 2O4VA 2W80C 1G90A 2XTRA 1BXWA 4K3CA 5GTIO 4AUIA 3LK2A 3POUA 4O3ZA 3DA4A 1Q9FA 1MPFA 3PRNA 3AAAB 3JCUO 4IL6O 3O0EA 5KAIO 1THQA 5KAFO 4AYMC 4AKRB 8PRNA 2KDYA 4FUVA 2J1NA 3V8UA 5DL6A 3WI5A 3AA6A 4D5UA 2Y0HA 4G76A 2R8AA 2XG6A 4RJXA 6PRNA 4GHBA 2K4TA 4JFBA 7PRNA 5IYUA 4C00A 4K3BA 3TZGA 3HOEA 2R4OA 1Q9GA 4D64A 3SY7A 2KC0A 3WU2O 2Y0KA 3UPGA 1IZNA 1MM5A 3AAEB 3PF1A 4O4XA 4PR7A 2X27X 3HWBA 5G3AA 4FZNA 4GF4A 4UB6O 3AA0B 3LK3A 4O3WA 3SYSA 5E79O 3BRYA 3T24A 1P4TA 2KZ7A 3KVDD 4CTDA 4AYNA 1T1LA 5GV0A 1PRNA 2WVPA 4GCQA 3A0HO 2R4NA 4FESA 4UB8O 2JMMA 4AYEC 4N58A 2AXTO 3FYXA 1ZHZA 1S5LO 2GE4A 2Y2XA 3KZIO 1GFMA 1H6S1 3DWNA 3PORA 2R88A 5G38A 2XMXA 3DA3A 2F1VA 4FSOA 4AFKA 4C4VB 2FGRA 2IWVA 4LSFA 3A0BO 4XNLA 3VZWX 4C69X 1GFNA 5H2FO 2M06A 4RL9A 4FSPA 5EE2A 5B66O 2PORA 2ZFGA 3AA1B 2ODJA 2PRNA 3HW9A 5JDPA 3NSGA 4FRXA 4RLCA 1ZHTA 2WJQA 1GFPA 5DL7A 3G7GA 4E1TA 4FOZA 1GFQA 1QJPA 4N75A 2KXPB 3K19A 3AAAA 3PGSA 3SYBA 4LSHA 2R4PA 4GCSA 4AKRA 4E1SA 3VY9X 3VZUX 1PHOA 3SZDA 1ZHXA 4U9CA 3DWOX 3JTYA 4RJWA 2M07A 3PQUA 4O3YA 3POXA 1BH3A 2ZLDA 4N74A 4D65A 3QRAA 2XTQA 1HXTA 3LK2B 2MHLA 4LSEA 4RLBA 2OMFA 1OSMA 5PRNA 4G75A 3T0SA 4B61A 5GTHO 3VE1A 3LK41 3PGRA 2N2LA 2N2MA 4BUMX 1ORMA 3AA6B 3AA7B 3AAEA 1MM4A 2XE5A 3PGUA 4AKMA 3NJTA 3AA0A 1YS5A 3SY9A 2KXPA 2J4UP 1GFOA 1ZHWA 2FGQX 4XNKA 4KR8A 5AFUK 3A2SX 3PQSA 1IZNB 2JQYA 5FVNA 2F1TA 4GCPA 1BT9A 3VY8X 4O3XB 4N59A 5G39A 5AFUL 3T20A 1HXXA 1QJ9A 4FT6A 2MNHA 5TISO 3RBHA 2QTKA 3LK3B 4PJ0O 5ADXK 4FZLA 1QJ8A 5ADXL 3WI4A 3DZMA 4KR4A 5T5FA 2IWWA 2XE2A 2KZ7B 1OPFA 2W81C
chains in the Genus database with same CATH topology
4O49A 2Y0LA 4AZLA 4AYDC 1E54A 3SZVA 4O4UA 4KRAA 3AA7A 2XE3A 5DL8A 2YPVA 1ZHYA 3AA1A 3GP6A 4FZMA 4PUXA 2XE1A 5DL5A 4JCHA 2K0LA 3HOLA 4QQ1A 4LSIA 3LK42 2Y7SA 4AYID 2LFUA 3C5OA 3EMNX 4Z3TA 4F4BA 3VE2A 5G26A 3VZTX 1HXUA 2LHFA 4FMSA 3POQA 3QRCA 5D5DA 3UAQA 4FRTA 3UU2A 2ERVA 2YNKA 2O4VA 2W80C 1G90A 2XTRA 1BXWA 4AUIA 3LK2A 3POUA 4O3ZA 3DA4A 1Q9FA 1MPFA 3PRNA 3AAAB 8PRNA 3O0EA 4AYMC 1THQA 4AKRB 2KDYA 4FUVA 2J1NA 3V8UA 5DL6A 3WI5A 3AA6A 4D5UA 2Y0HA 4G76A 2XG6A 4RJXA 6PRNA 4GHBA 2K4TA 4JFBA 5IYUA 3TZGA 3HOEA 1Q9GA 4D64A 3SY7A 2KC0A 2Y0KA 3UPGA 1IZNA 1MM5A 3AAEB 4O4XA 2X27X 3HWBA 4FZNA 4GF4A 3AA0B 3LK3A 4O3WA 3SYSA 3T24A 1P4TA 2KZ7A 3KVDD 4AYNA 5GV0A 1PRNA 4GCQA 4FESA 2JMMA 4AYEC 4N58A 3FYXA 1ZHZA 2GE4A 2Y2XA 1GFMA 1H6S1 3PORA 2XMXA 3DA3A 2F1VA 4FSOA 4AFKA 2FGRA 4LSFA 3VZWX 4XNLA 4C69X 1GFNA 2M06A 4RL9A 4FSPA 5EE2A 2PORA 2ZFGA 3AA1B 2ODJA 2PRNA 3HW9A 5JDPA 3NSGA 4FRXA 4RLCA 1ZHTA 1GFPA 5DL7A 3G7GA 4E1TA 4FOZA 1GFQA 1QJPA 2KXPB 3K19A 3AAAA 3SYBA 4LSHA 4GCSA 4AKRA 4E1SA 3VY9X 3VZUX 1PHOA 3SZDA 1ZHXA 4U9CA 3JTYA 4RJWA 2M07A 3PQUA 4O3YA 3POXA 1BH3A 2ZLDA 4D65A 7PRNA 3QRAA 2XTQA 1HXTA 3LK2B 2MHLA 4LSEA 4RLBA 2OMFA 1OSMA 5PRNA 4G75A 3T0SA 4B61A 3VE1A 3LK41 2N2LA 2N2MA 4BUMX 1ORMA 3AA6B 3AA7B 3AAEA 1MM4A 2XE5A 4AKMA 3AA0A 1YS5A 3SY9A 2KXPA 2J4UP 1GFOA 1ZHWA 2FGQX 4XNKA 4KR8A 5AFUK 3A2SX 3PQSA 1IZNB 5FVNA 2F1TA 4GCPA 1BT9A 3VY8X 4O3XB 4N59A 5AFUL 3T20A 1HXXA 1QJ9A 4FT6A 2MNHA 3RBHA 5ADXK 2QTKA 3LK3B 5ADXL 4FZLA 1QJ8A 3WI4A 4KR4A 5T5FA 2XE2A 2KZ7B 1OPFA 2W81C
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2Y0L A;  1E54 A;  3SZV A;  4KRA A;  2XE3 A;  5DL8 A;  5DL5 A;  2XE1 A;  4LSI A;  3EMN X;  3VZT X;  1HXU A;  4FMS A;  3POQ A;  3UU2 A;  4FRT A;  2O4V A;  4AUI A;  3POU A;  3PRN A;  1MPF A;  8PRN A;  3O0E A;  2J1N A;  5DL6 A;  3WI5 A;  4D5U A;  2Y0H A;  2XG6 A;  4RJX A;  6PRN A;  2K4T A;  4JFB A;  4D64 A;  3SY7 A;  2Y0K A;  3UPG A;  3HWB A;  3SYS A;  3T24 A;  1PRN A;  4GCQ A;  3FYX A;  2Y2X A;  1GFM A;  1H6S 1;  3POR A;  4FSO A;  2FGR A;  4LSF A;  3VZW X;  4C69 X;  1GFN A;  4FSP A;  2POR A;  2ZFG A;  2ODJ A;  2PRN A;  3HW9 A;  5JDP A;  3NSG A;  4FRX A;  1GFP A;  5DL7 A;  4FOZ A;  1GFQ A;  3K19 A;  3SYB A;  4LSH A;  4GCS A;  3VY9 X;  3VZU X;  1PHO A;  3SZD A;  3JTY A;  4RJW A;  7PRN A;  3POX A;  1BH3 A;  2ZLD A;  4D65 A;  4LSE A;  1HXT A;  2OMF A;  1OSM A;  5PRN A;  3T0S A;  4BUM X;  2XE5 A;  2J4U P;  1GFO A;  2FGQ X;  4KR8 A;  3A2S X;  5FVN A;  4GCP A;  1BT9 A;  3VY8 X;  3T20 A;  1HXX A;  4FT6 A;  2QTK A;  3WI4 A;  4KR4 A;  2XE2 A;  3SY9 A;  1OPF A; 
#chains in the Genus database with same CATH topology
 4O49 A;  2Y0L A;  4AZL A;  4AYD C;  1E54 A;  3SZV A;  4C4V A;  4O4U A;  4KRA A;  3AA7 A;  2XE3 A;  2X9K A;  1T16 A;  5DL8 A;  2YPV A;  1ZHY A;  3AA1 A;  3GP6 A;  4FZM A;  4PUX A;  2XE1 A;  5DL5 A;  4JCH A;  2K0L A;  2WJR A;  3HOL A;  3BRZ A;  5B5E O;  4QQ1 A;  4LSI A;  3LK4 2;  2Y7S A;  4AYI D;  2LFU A;  3C5O A;  3EMN X;  4Z3T A;  4F4B A;  3VE2 A;  5G26 A;  2R4L A;  3BS0 A;  3VZT X;  1HXU A;  2LHF A;  4FMS A;  3POQ A;  3QRC A;  4FQE A;  5D5D A;  4FRT A;  2F1C X;  3UAQ A;  2ERV A;  2R89 A;  3UU2 A;  2YNK A;  2O4V A;  2W80 C;  1G90 A;  2XTR A;  1BXW A;  4K3C A;  5GTI O;  4AUI A;  3LK2 A;  3POU A;  4O3Z A;  3DA4 A;  1Q9F A;  1MPF A;  3PRN A;  3AAA B;  3JCU O;  4IL6 O;  3O0E A;  5KAI O;  1THQ A;  5KAF O;  4AYM C;  4AKR B;  8PRN A;  2KDY A;  4FUV A;  2J1N A;  3V8U A;  5DL6 A;  3WI5 A;  3AA6 A;  4D5U A;  2Y0H A;  4G76 A;  2R8A A;  2XG6 A;  4RJX A;  6PRN A;  4GHB A;  2K4T A;  4JFB A;  7PRN A;  5IYU A;  4C00 A;  4K3B A;  3TZG A;  3HOE A;  2R4O A;  1Q9G A;  4D64 A;  3SY7 A;  2KC0 A;  3WU2 O;  2Y0K A;  3UPG A;  1IZN A;  1MM5 A;  3AAE B;  3PF1 A;  4O4X A;  4PR7 A;  2X27 X;  3HWB A;  5G3A A;  4FZN A;  4GF4 A;  4UB6 O;  3AA0 B;  3LK3 A;  4O3W A;  3SYS A;  5E79 O;  3BRY A;  3T24 A;  1P4T A;  2KZ7 A;  3KVD D;  4CTD A;  4AYN A;  1T1L A;  5GV0 A;  1PRN A;  2WVP A;  4GCQ A;  3A0H O;  2R4N A;  4FES A;  4UB8 O;  2JMM A;  4AYE C;  4N58 A;  2AXT O;  3FYX A;  1ZHZ A;  1S5L O;  2GE4 A;  2Y2X A;  3KZI O;  1GFM A;  1H6S 1;  3DWN A;  3POR A;  2R88 A;  5G38 A;  2XMX A;  3DA3 A;  2F1V A;  4FSO A;  4AFK A;  4C4V B;  2FGR A;  2IWV A;  4LSF A;  3A0B O;  4XNL A;  3VZW X;  4C69 X;  1GFN A;  5H2F O;  2M06 A;  4RL9 A;  4FSP A;  5EE2 A;  5B66 O;  2POR A;  2ZFG A;  3AA1 B;  2ODJ A;  2PRN A;  3HW9 A;  5JDP A;  3NSG A;  4FRX A;  4RLC A;  1ZHT A;  2WJQ A;  1GFP A;  5DL7 A;  3G7G A;  4E1T A;  4FOZ A;  1GFQ A;  1QJP A;  4N75 A;  2KXP B;  3K19 A;  3AAA A;  3PGS A;  3SYB A;  4LSH A;  2R4P A;  4GCS A;  4AKR A;  4E1S A;  3VY9 X;  3VZU X;  1PHO A;  3SZD A;  1ZHX A;  4U9C A;  3DWO X;  3JTY A;  4RJW A;  2M07 A;  3PQU A;  4O3Y A;  3POX A;  1BH3 A;  2ZLD A;  4N74 A;  4D65 A;  3QRA A;  2XTQ A;  1HXT A;  3LK2 B;  2MHL A;  4LSE A;  4RLB A;  2OMF A;  1OSM A;  5PRN A;  4G75 A;  3T0S A;  4B61 A;  5GTH O;  3VE1 A;  3LK4 1;  3PGR A;  2N2L A;  2N2M A;  4BUM X;  1ORM A;  3AA6 B;  3AA7 B;  3AAE A;  1MM4 A;  2XE5 A;  3PGU A;  4AKM A;  3NJT A;  3AA0 A;  1YS5 A;  3SY9 A;  2KXP A;  2J4U P;  1GFO A;  1ZHW A;  2FGQ X;  4XNK A;  4KR8 A;  5AFU K;  3A2S X;  3PQS A;  1IZN B;  2JQY A;  5FVN A;  2F1T A;  4GCP A;  1BT9 A;  3VY8 X;  4O3X B;  4N59 A;  5G39 A;  5AFU L;  3T20 A;  1HXX A;  1QJ9 A;  4FT6 A;  2MNH A;  5TIS O;  3RBH A;  2QTK A;  3LK3 B;  4PJ0 O;  5ADX K;  4FZL A;  1QJ8 A;  5ADX L;  3WI4 A;  3DZM A;  4KR4 A;  5T5F A;  2IWW A;  2XE2 A;  2KZ7 B;  1OPF A;  2W81 C; 
#chains in the Genus database with same CATH homology
 4O49 A;  2Y0L A;  4AZL A;  4AYD C;  1E54 A;  3SZV A;  4O4U A;  4KRA A;  3AA7 A;  2XE3 A;  5DL8 A;  2YPV A;  1ZHY A;  3AA1 A;  3GP6 A;  4FZM A;  4PUX A;  2XE1 A;  5DL5 A;  4JCH A;  2K0L A;  3HOL A;  4QQ1 A;  4LSI A;  3LK4 2;  2Y7S A;  4AYI D;  2LFU A;  3C5O A;  3EMN X;  4Z3T A;  4F4B A;  3VE2 A;  5G26 A;  3VZT X;  1HXU A;  2LHF A;  4FMS A;  3POQ A;  3QRC A;  5D5D A;  3UAQ A;  4FRT A;  3UU2 A;  2ERV A;  2YNK A;  2O4V A;  2W80 C;  1G90 A;  2XTR A;  1BXW A;  4AUI A;  3LK2 A;  3POU A;  4O3Z A;  3DA4 A;  1Q9F A;  1MPF A;  3PRN A;  3AAA B;  8PRN A;  3O0E A;  4AYM C;  1THQ A;  4AKR B;  2KDY A;  4FUV A;  2J1N A;  3V8U A;  5DL6 A;  3WI5 A;  3AA6 A;  4D5U A;  2Y0H A;  4G76 A;  2XG6 A;  4RJX A;  6PRN A;  4GHB A;  2K4T A;  4JFB A;  5IYU A;  3TZG A;  3HOE A;  1Q9G A;  4D64 A;  3SY7 A;  2KC0 A;  2Y0K A;  3UPG A;  1IZN A;  1MM5 A;  3AAE B;  4O4X A;  2X27 X;  3HWB A;  4FZN A;  4GF4 A;  3AA0 B;  3LK3 A;  4O3W A;  3SYS A;  3T24 A;  1P4T A;  2KZ7 A;  3KVD D;  4AYN A;  5GV0 A;  1PRN A;  4GCQ A;  4FES A;  2JMM A;  4AYE C;  4N58 A;  3FYX A;  1ZHZ A;  2GE4 A;  2Y2X A;  1GFM A;  1H6S 1;  3POR A;  2XMX A;  3DA3 A;  2F1V A;  4FSO A;  4AFK A;  2FGR A;  4LSF A;  3VZW X;  4XNL A;  4C69 X;  1GFN A;  2M06 A;  4RL9 A;  4FSP A;  5EE2 A;  2POR A;  2ZFG A;  3AA1 B;  2ODJ A;  2PRN A;  3HW9 A;  5JDP A;  3NSG A;  4FRX A;  4RLC A;  1ZHT A;  1GFP A;  5DL7 A;  3G7G A;  4E1T A;  4FOZ A;  1GFQ A;  1QJP A;  2KXP B;  3K19 A;  3AAA A;  3SYB A;  4LSH A;  4GCS A;  4AKR A;  4E1S A;  3VY9 X;  3VZU X;  1PHO A;  3SZD A;  1ZHX A;  4U9C A;  3JTY A;  4RJW A;  2M07 A;  3PQU A;  4O3Y A;  3POX A;  1BH3 A;  2ZLD A;  4D65 A;  7PRN A;  3QRA A;  2XTQ A;  1HXT A;  3LK2 B;  2MHL A;  4LSE A;  4RLB A;  2OMF A;  1OSM A;  5PRN A;  4G75 A;  3T0S A;  4B61 A;  3VE1 A;  3LK4 1;  2N2L A;  2N2M A;  4BUM X;  1ORM A;  3AA6 B;  3AA7 B;  3AAE A;  1MM4 A;  2XE5 A;  4AKM A;  3AA0 A;  1YS5 A;  3SY9 A;  2KXP A;  2J4U P;  1GFO A;  1ZHW A;  2FGQ X;  4XNK A;  4KR8 A;  5AFU K;  3A2S X;  3PQS A;  1IZN B;  5FVN A;  2F1T A;  4GCP A;  1BT9 A;  3VY8 X;  4O3X B;  4N59 A;  5AFU L;  3T20 A;  1HXX A;  1QJ9 A;  4FT6 A;  2MNH A;  3RBH A;  5ADX K;  2QTK A;  3LK3 B;  5ADX L;  4FZL A;  1QJ8 A;  3WI4 A;  4KR4 A;  5T5F A;  2XE2 A;  2KZ7 B;  1OPF A;  2W81 C; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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