The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
41
|
sequence length |
183
|
structure length |
183
|
Chain Sequence |
TELTDARRYWVDVTLATNNISHAVIAEDKRQVSSRAGTGVLGSQSITSGKHYWEVDVSKKSAWILGVCAGFQSDAMYNIEQNENYQPKYGYWVIGLQEGVKYSVFQDGSSHTPFAPFIVPLSVIICPDRVGVFVDYEACTVSFFNITNHGFLIYKFSQCSFSKPVFPYLNPRKCTVPMTLCSP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
publication title |
Structure of the rhesus monkey TRIM5alpha PRYSPRY domain, the HIV capsid recognition module.
pubmed doi rcsb |
molecule tags |
Ligase
|
source organism |
Macaca mulatta
|
molecule keywords |
Tripartite motif-containing protein 5
|
total genus |
41
|
structure length |
183
|
sequence length |
183
|
ec nomenclature |
ec
2.3.2.27: RING-type E3 ubiquitin transferase. |
pdb deposition date | 2011-11-29 |
chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
---|---|---|---|
A | PF00622 | SPRY | SPRY domain |
cath code
| Class | Architecture | Topology | Homology | Domain |
---|---|---|---|---|---|
Mainly Beta | Sandwich | Jelly Rolls | Jelly Rolls |