3UW0A

Pectin methylesterase from yersinia enterocolitica
Total Genus 103
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
320
structure length
320
Chain Sequence
b'FSSINAALKSAPKDDTPFIIFLKNGVYTERLEVARSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNIVARDRSDIEPPYGYITAPSTLTTSPYGLIFINSRLTKEPGVPANSFALGRPWHPTTTFADGRYADPAAIGQSVFINTTMDDHIYGWDKMSGKDKQGEKIWFYPQDSRFFEANSQGPGAAINEGRRQLSAEQLKAFTLPMIFPDWAV'
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords pectinesterase
publication title Structure of a pectin methylesterase from Yersinia enterocolitica.
pubmed doi rcsb
source organism Yersinia enterocolitica subsp. enterocolitica
molecule tags Hydrolase
total genus 103
structure length 320
sequence length 320
ec nomenclature ec 3.1.1.11: Pectinesterase.
pdb deposition date 2011-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3uw0A00
3FY3A 1O8IA 4OJPA 4W8SA 1DBOA 4NK8A 3WWGA 2X6XA 3KRGA 4U4BA 4OZYA 1OFLA 3JURA 4XKVA 4XLEA 4PMHA 4YELA 1RU4A 1XG2A 4Z06A 4XN0A 2X3HA 2EWEA 2NSTA 2PECA 2NTQA 3GQAA 3VMVA 5C1EA 1O8EA 2O0WA 4YZ0A 2VBKA 1JTAA 1PLUA 4XM3A 3ZPPA 1EE6A 4OJ6A 4XLCA 1PXZA 4AVZA 1BN8A 1BHEA 2O04A 2PYHA 4NK6A 4XLHA 1KTWA 4XLFA 1JRGA 2INUA 2PYGA 3B90A 2X6YA 4XLAA 4URRA 1O8KA 5AMVA 3ZSCA 1O8HA 3T9GA 2IQ7A 2QXZA 1HG8A 4XONA 1X0CA 1O8FA 1GQ8A 1RWRA 4HWVA 1CZFA 2QX3A 3VSUA 4W8TA 3VSVA 3GQ9A 2VBEA 2NZMA 3SUCA 4XR6A 1IDJA 4U49A 4OJOA 1H80A 2VJJA 3LMWA 1NHCA 1OGOX 4Z03A 1O8GA 4YZAA 1OFMA 1IA5A 2Z8GA 1KCDA 2O0VA 2NT9A 4OJ5A 2NSPA 2X85A 4W8RA 2VBMA 1O8JA 4XQFA 4Z05A 3EQOA 4XOPA 2QY1A 1KCCA 2UVEA 2O17A 4XL9A 4W8QA 2INVA 4MR0A 1DBGA 3B4NA 2UVFA 4OZZA 3VMWA 1K5CA 4XORA 2NTPA 4YEJA 3EQNA 1O8LA 3GQ8A 4C2LA 2X6WA 4OJLA 3GQ7A 1OGMX 5C1CA 1O8MA 4MXNA 4XNFA 2ODLA 3VSTA 1O88A 4EW9A 1RMGA 4XN3A 3GRHA 1QCXA 1IB4A 1AIRA 4I84A 3B8YA 1O8DA 1PE9A 1WMRA 1OOCA 1VBLA 2BSPA 4YZQA 4XMYA 3UW0A 4YZXA 4XKWA 2NT6A 1IDKA 2VJIA 2NTBA 4XOTA 2O1DA 1QJVA
chains in the Genus database with same CATH superfamily
3NAWA 4YDTA 3FY3A 1O8IA 4OJPA 4W8SA 3BH6B 3LJYA 1DBOA 4NK8A 3PSSA 1LM1A 2XT2A 3WWGA 2X6XA 4YEIA 3KRGA 3N6ZA 4OZYA 4U4BA 2YUHA 3SZEA 1OFLA 3JURA 4XKVA 4XLEA 4PMHA 2W7ZA 4YELA 1RU4A 1XG2A 4Z06A 4XN0A 1WXRA 2G0YA 4YCQA 2EWEA 1OFDA 2NSTA 2PECA 2NTQA 2X3HA 3GQAA 4OM9A 5C1EA 3VMVA 1O8EA 2O0WA 4YZ0A 2VBKA 1JTAA 1PLUA 2QYUA 4XM3A 3ZPPA 1EE6A 1QRBA 3ML3A 4OJ6A 1PXZA 1QRCA 1BN8A 1TYUA 4XLCA 4AVZA 1BHEA 2O04A 2PYHA 3LYCA 4NK6A 4XLHA 1KTWA 2XTWA 4XLFA 1QA3A 1TYVA 2V5IA 2VFPA 1JRGA 2INUA 2PYGA 3B90A 2X6YA 2XC1A 4XLAA 1K8FA 4URRA 1O8KA 5AMVA 3ZSCA 1O8HA 3T9GA 2IQ7A 1QA2A 2BM5A 1CLWA 2QZAA 2QXZA 2VFNA 1HG8A 4XONA 5JMCB 1X0CA 1O8FA 1GQ8A 2VFMA 1RWRA 4HWVA 2BM4A 1CZFA 3H09A 3SY2A 3N90A 2QX3A 3VSUA 4W8TA 3VSVA 3GQ9A 1LLZA 1QA1A 2VBEA 2NZMA 5JLVC 3SUCA 4XR6A 1IDJA 4U49A 4OJOA 4V02C 1H80A 2VJJA 3LMWA 3SQVA 1NHCA 2BM7A 1OGOX 1TYWA 1QQ1A 2O6WA 1O8GA 4YZAA 4Z03A 3SYJA 4YC5A 1OFMA 1IA5A 2Z8GA 1KCDA 2O0VA 2NT9A 4OJ5A 2NSPA 2X85A 4W8RA 2VBMA 2BX6A 1O8JA 4XQFA 3AK5A 1EA0A 4YFOA 4Z05A 3EQOA 4XOPA 2QY1A 2XT4A 2O1DA 1KCCA 2UVEA 4KH3A 2O17A 2XTXA 4XL9A 2J8IA 2INVA 4W8QA 4MR0A 1DBGA 1TSPA 3B4NA 2UVFA 4OZZA 3VMWA 1K5CA 4XORA 4JRAC 5DNSA 2NTPA 4YEJA 3EQNA 2B0RA 1O8LA 3GQ8A 3TH0A 1L1IA 1K4ZA 3PSZA 2BM6A 4C2LA 2X6WA 1KQ5A 3GQ7A 4OJLA 1OGMX 5C1CA 1O8MA 2VFOA 4MXNA 1OFEA 4XNFA 2ODLA 3VSTA 1TYXA 2IOUG 1O88A 4EW9A 4OPWA 1RMGA 2VFQA 2J8KA 1EZGA 4XN3A 3GRHA 1HF2A 1QCXA 4XOTA 1IB4A 3JX8A 1AIRA 4I84A 3B8YA 1O8DA 3BH7B 1PE9A 1WMRA 1OOCA 3NB2A 1VBLA 3P4GA 2BSPA 1LLWA 4YZQA 4XMYA 3UW0A 4YZXA 1DABA 4XKWA 3RIQA 3PETA 3DU1X 2NT6A 1IDKA 2VJIA 2NTBA 2XTYA 2F3LA 1QJVA
chains in the Genus database with same CATH topology
3FY3A 1O8IA 4OJPA 4W8SA 1DBOA 4NK8A 3WWGA 2X6XA 3KRGA 4U4BA 4OZYA 1OFLA 3JURA 4XKVA 4XLEA 4PMHA 4YELA 1RU4A 1XG2A 4Z06A 4XN0A 2X3HA 2EWEA 2NSTA 2PECA 2NTQA 3GQAA 3VMVA 5C1EA 1O8EA 2O0WA 4YZ0A 2VBKA 1JTAA 1PLUA 4XM3A 3ZPPA 1EE6A 4OJ6A 4XLCA 1PXZA 4AVZA 1BN8A 1BHEA 2O04A 2PYHA 4NK6A 4XLHA 1KTWA 4XLFA 1JRGA 2INUA 2PYGA 3B90A 2X6YA 4XLAA 4URRA 1O8KA 5AMVA 3ZSCA 1O8HA 3T9GA 2IQ7A 2QXZA 1HG8A 4XONA 1X0CA 1O8FA 1GQ8A 1RWRA 4HWVA 1CZFA 2QX3A 3VSUA 4W8TA 3VSVA 3GQ9A 2VBEA 2NZMA 3SUCA 4XR6A 1IDJA 4U49A 4OJOA 1H80A 2VJJA 3LMWA 1NHCA 1OGOX 4Z03A 1O8GA 4YZAA 1OFMA 1IA5A 2Z8GA 1KCDA 2O0VA 2NT9A 4OJ5A 2NSPA 2X85A 4W8RA 2VBMA 1O8JA 4XQFA 4Z05A 3EQOA 4XOPA 2QY1A 1KCCA 2UVEA 2O17A 4XL9A 4W8QA 2INVA 4MR0A 1DBGA 3B4NA 2UVFA 4OZZA 3VMWA 1K5CA 4XORA 2NTPA 4YEJA 3EQNA 1O8LA 3GQ8A 4C2LA 2X6WA 4OJLA 3GQ7A 1OGMX 5C1CA 1O8MA 4MXNA 4XNFA 2ODLA 3VSTA 1O88A 4EW9A 1RMGA 4XN3A 3GRHA 1QCXA 1IB4A 1AIRA 4I84A 3B8YA 1O8DA 1PE9A 1WMRA 1OOCA 1VBLA 2BSPA 4YZQA 4XMYA 3UW0A 4YZXA 4XKWA 2NT6A 1IDKA 2VJIA 2NTBA 4XOTA 2O1DA 1QJVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3FY3 A;  1O8I A;  4OJP A;  4W8S A;  1DBO A;  4NK8 A;  3WWG A;  2X6X A;  3KRG A;  4U4B A;  4OZY A;  1OFL A;  3JUR A;  4XKV A;  4XLE A;  4PMH A;  4YEL A;  1RU4 A;  1XG2 A;  4Z06 A;  4XN0 A;  2X3H A;  2EWE A;  2NST A;  2PEC A;  2NTQ A;  3GQA A;  3VMV A;  5C1E A;  1O8E A;  2O0W A;  4YZ0 A;  2VBK A;  1JTA A;  1PLU A;  4XM3 A;  3ZPP A;  1EE6 A;  4OJ6 A;  4XLC A;  1PXZ A;  4AVZ A;  1BN8 A;  1BHE A;  2O04 A;  2PYH A;  4NK6 A;  4XLH A;  1KTW A;  4XLF A;  1JRG A;  2INU A;  2PYG A;  3B90 A;  2X6Y A;  4XLA A;  4URR A;  1O8K A;  5AMV A;  3ZSC A;  1O8H A;  3T9G A;  2IQ7 A;  2QXZ A;  1HG8 A;  4XON A;  1X0C A;  1O8F A;  1GQ8 A;  1RWR A;  4HWV A;  1CZF A;  2QX3 A;  3VSU A;  4W8T A;  3VSV A;  3GQ9 A;  2VBE A;  2NZM A;  3SUC A;  4XR6 A;  1IDJ A;  4U49 A;  4OJO A;  1H80 A;  2VJJ A;  3LMW A;  1NHC A;  1OGO X;  4Z03 A;  1O8G A;  4YZA A;  1OFM A;  1IA5 A;  2Z8G A;  1KCD A;  2O0V A;  2NT9 A;  4OJ5 A;  2NSP A;  2X85 A;  4W8R A;  2VBM A;  1O8J A;  4XQF A;  4Z05 A;  3EQO A;  4XOP A;  2QY1 A;  1KCC A;  2UVE A;  2O17 A;  4XL9 A;  4W8Q A;  2INV A;  4MR0 A;  1DBG A;  3B4N A;  2UVF A;  4OZZ A;  3VMW A;  1K5C A;  4XOR A;  2NTP A;  4YEJ A;  3EQN A;  1O8L A;  3GQ8 A;  4C2L A;  2X6W A;  4OJL A;  3GQ7 A;  1OGM X;  5C1C A;  1O8M A;  4MXN A;  4XNF A;  2ODL A;  3VST A;  1O88 A;  4EW9 A;  1RMG A;  4XN3 A;  3GRH A;  1QCX A;  1IB4 A;  1AIR A;  4I84 A;  3B8Y A;  1O8D A;  1PE9 A;  1WMR A;  1OOC A;  1VBL A;  2BSP A;  4YZQ A;  4XMY A;  3UW0 A;  4YZX A;  4XKW A;  2NT6 A;  1IDK A;  2VJI A;  2NTB A;  4XOT A;  2O1D A;  1QJV A; 
#chains in the Genus database with same CATH topology
 3NAW A;  4YDT A;  3FY3 A;  1O8I A;  4OJP A;  4W8S A;  3BH6 B;  3LJY A;  1DBO A;  4NK8 A;  3PSS A;  1LM1 A;  2XT2 A;  3WWG A;  2X6X A;  4YEI A;  3KRG A;  3N6Z A;  4OZY A;  4U4B A;  2YUH A;  3SZE A;  1OFL A;  3JUR A;  4XKV A;  4XLE A;  4PMH A;  2W7Z A;  4YEL A;  1RU4 A;  1XG2 A;  4Z06 A;  4XN0 A;  1WXR A;  2G0Y A;  4YCQ A;  2EWE A;  1OFD A;  2NST A;  2PEC A;  2NTQ A;  2X3H A;  3GQA A;  4OM9 A;  5C1E A;  3VMV A;  1O8E A;  2O0W A;  4YZ0 A;  2VBK A;  1JTA A;  1PLU A;  2QYU A;  4XM3 A;  3ZPP A;  1EE6 A;  1QRB A;  3ML3 A;  4OJ6 A;  1PXZ A;  1QRC A;  1BN8 A;  1TYU A;  4XLC A;  4AVZ A;  1BHE A;  2O04 A;  2PYH A;  3LYC A;  4NK6 A;  4XLH A;  1KTW A;  2XTW A;  4XLF A;  1QA3 A;  1TYV A;  2V5I A;  2VFP A;  1JRG A;  2INU A;  2PYG A;  3B90 A;  2X6Y A;  2XC1 A;  4XLA A;  1K8F A;  4URR A;  1O8K A;  5AMV A;  3ZSC A;  1O8H A;  3T9G A;  2IQ7 A;  1QA2 A;  2BM5 A;  1CLW A;  2QZA A;  2QXZ A;  2VFN A;  1HG8 A;  4XON A;  5JMC B;  1X0C A;  1O8F A;  1GQ8 A;  2VFM A;  1RWR A;  4HWV A;  2BM4 A;  1CZF A;  3H09 A;  3SY2 A;  3N90 A;  2QX3 A;  3VSU A;  4W8T A;  3VSV A;  3GQ9 A;  1LLZ A;  1QA1 A;  2VBE A;  2NZM A;  5JLV C;  3SUC A;  4XR6 A;  1IDJ A;  4U49 A;  4OJO A;  4V02 C;  1H80 A;  2VJJ A;  3LMW A;  3SQV A;  1NHC A;  2BM7 A;  1OGO X;  1TYW A;  1QQ1 A;  2O6W A;  1O8G A;  4YZA A;  4Z03 A;  3SYJ A;  4YC5 A;  1OFM A;  1IA5 A;  2Z8G A;  1KCD A;  2O0V A;  2NT9 A;  4OJ5 A;  2NSP A;  2X85 A;  4W8R A;  2VBM A;  2BX6 A;  1O8J A;  4XQF A;  3AK5 A;  1EA0 A;  4YFO A;  4Z05 A;  3EQO A;  4XOP A;  2QY1 A;  2XT4 A;  2O1D A;  1KCC A;  2UVE A;  4KH3 A;  2O17 A;  2XTX A;  4XL9 A;  2J8I A;  2INV A;  4W8Q A;  4MR0 A;  1DBG A;  1TSP A;  3B4N A;  2UVF A;  4OZZ A;  3VMW A;  1K5C A;  4XOR A;  4JRA C;  5DNS A;  2NTP A;  4YEJ A;  3EQN A;  2B0R A;  1O8L A;  3GQ8 A;  3TH0 A;  1L1I A;  1K4Z A;  3PSZ A;  2BM6 A;  4C2L A;  2X6W A;  1KQ5 A;  3GQ7 A;  4OJL A;  1OGM X;  5C1C A;  1O8M A;  2VFO A;  4MXN A;  1OFE A;  4XNF A;  2ODL A;  3VST A;  1TYX A;  2IOU G;  1O88 A;  4EW9 A;  4OPW A;  1RMG A;  2VFQ A;  2J8K A;  1EZG A;  4XN3 A;  3GRH A;  1HF2 A;  1QCX A;  4XOT A;  1IB4 A;  3JX8 A;  1AIR A;  4I84 A;  3B8Y A;  1O8D A;  3BH7 B;  1PE9 A;  1WMR A;  1OOC A;  3NB2 A;  1VBL A;  3P4G A;  2BSP A;  1LLW A;  4YZQ A;  4XMY A;  3UW0 A;  4YZX A;  1DAB A;  4XKW A;  3RIQ A;  3PET A;  3DU1 X;  2NT6 A;  1IDK A;  2VJI A;  2NTB A;  2XTY A;  2F3L A;  1QJV A; 
#chains in the Genus database with same CATH homology
 3FY3 A;  1O8I A;  4OJP A;  4W8S A;  1DBO A;  4NK8 A;  3WWG A;  2X6X A;  3KRG A;  4U4B A;  4OZY A;  1OFL A;  3JUR A;  4XKV A;  4XLE A;  4PMH A;  4YEL A;  1RU4 A;  1XG2 A;  4Z06 A;  4XN0 A;  2X3H A;  2EWE A;  2NST A;  2PEC A;  2NTQ A;  3GQA A;  3VMV A;  5C1E A;  1O8E A;  2O0W A;  4YZ0 A;  2VBK A;  1JTA A;  1PLU A;  4XM3 A;  3ZPP A;  1EE6 A;  4OJ6 A;  4XLC A;  1PXZ A;  4AVZ A;  1BN8 A;  1BHE A;  2O04 A;  2PYH A;  4NK6 A;  4XLH A;  1KTW A;  4XLF A;  1JRG A;  2INU A;  2PYG A;  3B90 A;  2X6Y A;  4XLA A;  4URR A;  1O8K A;  5AMV A;  3ZSC A;  1O8H A;  3T9G A;  2IQ7 A;  2QXZ A;  1HG8 A;  4XON A;  1X0C A;  1O8F A;  1GQ8 A;  1RWR A;  4HWV A;  1CZF A;  2QX3 A;  3VSU A;  4W8T A;  3VSV A;  3GQ9 A;  2VBE A;  2NZM A;  3SUC A;  4XR6 A;  1IDJ A;  4U49 A;  4OJO A;  1H80 A;  2VJJ A;  3LMW A;  1NHC A;  1OGO X;  4Z03 A;  1O8G A;  4YZA A;  1OFM A;  1IA5 A;  2Z8G A;  1KCD A;  2O0V A;  2NT9 A;  4OJ5 A;  2NSP A;  2X85 A;  4W8R A;  2VBM A;  1O8J A;  4XQF A;  4Z05 A;  3EQO A;  4XOP A;  2QY1 A;  1KCC A;  2UVE A;  2O17 A;  4XL9 A;  4W8Q A;  2INV A;  4MR0 A;  1DBG A;  3B4N A;  2UVF A;  4OZZ A;  3VMW A;  1K5C A;  4XOR A;  2NTP A;  4YEJ A;  3EQN A;  1O8L A;  3GQ8 A;  4C2L A;  2X6W A;  4OJL A;  3GQ7 A;  1OGM X;  5C1C A;  1O8M A;  4MXN A;  4XNF A;  2ODL A;  3VST A;  1O88 A;  4EW9 A;  1RMG A;  4XN3 A;  3GRH A;  1QCX A;  1IB4 A;  1AIR A;  4I84 A;  3B8Y A;  1O8D A;  1PE9 A;  1WMR A;  1OOC A;  1VBL A;  2BSP A;  4YZQ A;  4XMY A;  3UW0 A;  4YZX A;  4XKW A;  2NT6 A;  1IDK A;  2VJI A;  2NTB A;  4XOT A;  2O1D A;  1QJV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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