3UW0A

Pectin methylesterase from yersinia enterocolitica
Total Genus 103
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
103
sequence length
320
structure length
320
Chain Sequence
FSSINAALKSAPKDDTPFIIFLKNGVYTERLEVARSHVTLKGENRDGTVIGANTAAGMLNPQGEKWGTSGSSTVLVNAPNFTAENLTIRNDFDFPANKKKADTDPTKLKDTQAVALLLAENSDKARFKAVKLEGYQDTLYSKTGSRSYFSDCEISGHVDFIFGSGITVFDNCNIVARDRSDIEPPYGYITAPSTLTTSPYGLIFINSRLTKEPGVPANSFALGRPWHPTTTFADGRYADPAAIGQSVFINTTMDDHIYGWDKMSGKDKQGEKIWFYPQDSRFFEANSQGPGAAINEGRRQLSAEQLKAFTLPMIFPDWAV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule keywords pectinesterase
publication title Structure of a pectin methylesterase from Yersinia enterocolitica.
pubmed doi rcsb
source organism Yersinia enterocolitica subsp. enterocolitica
molecule tags Hydrolase
total genus 103
structure length 320
sequence length 320
ec nomenclature ec 3.1.1.11: Pectinesterase.
pdb deposition date 2011-11-30

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF01095 Pectinesterase Pectinesterase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-like 3uw0A00
2QXZA 1PLUA 1HG8A 2X3HA 4W8TA 3B4NA 2X85A 1RU4A 3GQ7A 5AMVA 3EQNA 2X6YA 2INUA 1RWRA 1OFLA 4OJOA 1X0CA 4YZXA 2PECA 1JRGA 4XN0A 4XOPA 2O0WA 1RMGA 3SUCA 4MR0A 3ZSCA 4W8QA 1H80A 1VBLA 2O17A 2UVFA 4XLEA 1K5CA 1DBGA 1CZFA 3JURA 4Z06A 4EW9A 1O88A 2NTPA 3WWGA 5C1CA 3VMWA 4YZ0A 4U4BA 3LMWA 4PMHA 1O8HA 1OGOX 4XORA 1KTWA 3FY3A 4YEJA 1O8IA 3UW0A 2NT6A 1O8JA 1PXZA 4AVZA 1OFMA 2X6WA 2VBMA 4NK6A 4XMYA 1IB4A 3GQ8A 4Z03A 2UVEA 3GQ9A 2NTQA 3VMVA 1O8LA 4URRA 3B8YA 1IDKA 4OJLA 2QY1A 1BHEA 2IQ7A 4OJ6A 4OJ5A 4HWVA 2Z8GA 1QJVA 1O8FA 1OGMX 2NTBA 4XR6A 2VBEA 2VJJA 1PE9A 4OJPA 2VBKA 1XG2A 2O0VA 1O8EA 4OZYA 1AIRA 1WMRA 4XLAA 2X6XA 4YZAA 4XL9A 2NSTA 4W8SA 2VJIA 4XKVA 1KCCA 4XKWA 1O8GA 3VSUA 1JTAA 2EWEA 3KRGA 4XLCA 3ZPPA 1IDJA 1OOCA 1IA5A 2NT9A 1BN8A 4XOTA 3B90A 1O8DA 4XM3A 3VSVA 3GRHA 4XLHA 3GQAA 4I84A 4OZZA 4MXNA 1O8KA 3T9GA 2NSPA 2INVA 1O8MA 2O04A 2QX3A 2ODLA 4U49A 4XLFA 2PYHA 1DBOA 2O1DA 1EE6A 2BSPA 3EQOA 4NK8A 2NZMA 4XN3A 2PYGA 4W8RA 1KCDA 1NHCA 4XQFA 3VSTA 1QCXA 4YZQA 5C1EA 1GQ8A 4XONA 4C2LA 4YELA 4Z05A 4XNFA
chains in the Genus database with same CATH superfamily
2QXZA 1PLUA 1HG8A 2X3HA 3JX8A 1OFDA 4W8TA 3B4NA 3LYCA 2W7ZA 2X85A 3SY2A 1L1IA 4YDTA 1RU4A 3GQ7A 5AMVA 1EA0A 4KH3A 3EQNA 4YFOA 3SYJA 2X6YA 1LM1A 4JRAC 1TYVA 3BH6B 2INUA 3LJYA 1RWRA 1OFLA 3N90A 3PSSA 4OJOA 1X0CA 3PSZA 2VFMA 4YZXA 2PECA 1JRGA 4XN0A 4XOPA 1LLZA 2O0WA 1RMGA 3SUCA 4MR0A 1LLWA 1K8FA 3ZSCA 4W8QA 1H80A 1TYWA 1VBLA 2O17A 2UVFA 2F3LA 2QYUA 2VFOA 2J8IA 3NB2A 4XLEA 3DU1X 4V02C 1K5CA 1DBGA 4OPWA 1CZFA 3JURA 4Z06A 3SZEA 4EW9A 2BX6A 1O88A 2NTPA 3WWGA 1EZGA 2VFQA 5C1CA 3VMWA 4YZ0A 4U4BA 3LMWA 4PMHA 1O8HA 1OGOX 1QRCA 2B0RA 3BH7B 2XT2A 4XORA 1KTWA 3FY3A 4YEJA 1O8IA 2IOUG 3UW0A 2NT6A 1O8JA 1PXZA 4AVZA 4YEIA 1OFMA 5JMCB 2V5IA 2X6WA 1QRBA 2VBMA 4NK6A 2XTYA 4XMYA 3TH0A 1IB4A 3GQ8A 2VFNA 1TYUA 3N6ZA 4Z03A 2UVEA 1QA2A 3GQ9A 2NTQA 2O6WA 2BM7A 3VMVA 2BM6A 1O8LA 1KCCA 4URRA 3B8YA 1IDKA 4OJLA 2QY1A 1BHEA 2YUHA 5JLVC 1KQ5A 2IQ7A 4OJ6A 4OJ5A 4HWVA 2Z8GA 1QJVA 1HF2A 1O8FA 1OGMX 2NTBA 2BM5A 2VBEA 2VJJA 4XR6A 4YCQA 1DABA 1PE9A 1QA3A 4OJPA 2VBKA 1XG2A 2O0VA 5DNSA 4OM9A 2XTXA 1O8EA 4OZYA 1AIRA 1WMRA 1QQ1A 2X6XA 4XLAA 4YZAA 1TYXA 2G0YA 4XL9A 1QA1A 2NSTA 4W8SA 1OFEA 2VJIA 4XKVA 4XKWA 4YC5A 1O8GA 3VSUA 1JTAA 2EWEA 2VFPA 3KRGA 4XLCA 3H09A 1IDJA 3ZPPA 1OOCA 3SQVA 1IA5A 2NT9A 1BN8A 3P4GA 3ML3A 4XOTA 3PETA 3B90A 1O8DA 4XM3A 3VSVA 3GRHA 2XT4A 4XLHA 3GQAA 2QZAA 4I84A 2XC1A 4OZZA 2BM4A 1O8KA 4MXNA 3T9GA 2NSPA 2INVA 1O8MA 2O04A 2QX3A 3NAWA 2ODLA 4U49A 4XLFA 2PYHA 1DBOA 2O1DA 1EE6A 2BSPA 3EQOA 4NK8A 2NZMA 4XN3A 2PYGA 4W8RA 1KCDA 1NHCA 1CLWA 4XQFA 3VSTA 1QCXA 4YZQA 1K4ZA 3RIQA 2J8KA 5C1EA 1GQ8A 4XONA 1WXRA 3AK5A 2XTWA 4C2LA 4YELA 1TSPA 4Z05A 4XNFA
chains in the Genus database with same CATH topology
2QXZA 1PLUA 1HG8A 2X3HA 4W8TA 3B4NA 2X85A 1RU4A 3GQ7A 5AMVA 3EQNA 2X6YA 2INUA 1RWRA 1OFLA 4OJOA 1X0CA 4YZXA 2PECA 1JRGA 4XN0A 4XOPA 2O0WA 1RMGA 3SUCA 4MR0A 3ZSCA 4W8QA 1H80A 1VBLA 2O17A 2UVFA 4XLEA 1K5CA 1DBGA 1CZFA 3JURA 4Z06A 4EW9A 1O88A 2NTPA 3WWGA 5C1CA 3VMWA 4YZ0A 4U4BA 3LMWA 4PMHA 1O8HA 1OGOX 4XORA 1KTWA 3FY3A 4YEJA 1O8IA 3UW0A 2NT6A 1O8JA 1PXZA 4AVZA 1OFMA 2X6WA 2VBMA 4NK6A 4XMYA 1IB4A 3GQ8A 4Z03A 2UVEA 3GQ9A 2NTQA 3VMVA 1O8LA 4URRA 3B8YA 1IDKA 4OJLA 2QY1A 1BHEA 2IQ7A 4OJ6A 4OJ5A 4HWVA 2Z8GA 1QJVA 1O8FA 1OGMX 2NTBA 4XR6A 2VBEA 2VJJA 1PE9A 4OJPA 2VBKA 1XG2A 2O0VA 1O8EA 4OZYA 1AIRA 1WMRA 4XLAA 2X6XA 4YZAA 4XL9A 2NSTA 4W8SA 2VJIA 4XKVA 1KCCA 4XKWA 1O8GA 3VSUA 1JTAA 2EWEA 3KRGA 4XLCA 3ZPPA 1IDJA 1OOCA 1IA5A 2NT9A 1BN8A 4XOTA 3B90A 1O8DA 4XM3A 3VSVA 3GRHA 4XLHA 3GQAA 4I84A 4OZZA 4MXNA 1O8KA 3T9GA 2NSPA 2INVA 1O8MA 2O04A 2QX3A 2ODLA 4U49A 4XLFA 2PYHA 1DBOA 2O1DA 1EE6A 2BSPA 3EQOA 4NK8A 2NZMA 4XN3A 2PYGA 4W8RA 1KCDA 1NHCA 4XQFA 3VSTA 1QCXA 4YZQA 5C1EA 1GQ8A 4XONA 4C2LA 4YELA 4Z05A 4XNFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2QXZ A;  1PLU A;  1HG8 A;  2X3H A;  4W8T A;  3B4N A;  2X85 A;  1RU4 A;  3GQ7 A;  5AMV A;  3EQN A;  2X6Y A;  2INU A;  1RWR A;  1OFL A;  4OJO A;  1X0C A;  4YZX A;  2PEC A;  1JRG A;  4XN0 A;  4XOP A;  2O0W A;  1RMG A;  3SUC A;  4MR0 A;  3ZSC A;  4W8Q A;  1H80 A;  1VBL A;  2O17 A;  2UVF A;  4XLE A;  1K5C A;  1DBG A;  1CZF A;  3JUR A;  4Z06 A;  4EW9 A;  1O88 A;  2NTP A;  3WWG A;  5C1C A;  3VMW A;  4YZ0 A;  4U4B A;  3LMW A;  4PMH A;  1O8H A;  1OGO X;  4XOR A;  1KTW A;  3FY3 A;  4YEJ A;  1O8I A;  3UW0 A;  2NT6 A;  1O8J A;  1PXZ A;  4AVZ A;  1OFM A;  2X6W A;  2VBM A;  4NK6 A;  4XMY A;  1IB4 A;  3GQ8 A;  4Z03 A;  2UVE A;  3GQ9 A;  2NTQ A;  3VMV A;  1O8L A;  4URR A;  3B8Y A;  1IDK A;  4OJL A;  2QY1 A;  1BHE A;  2IQ7 A;  4OJ6 A;  4OJ5 A;  4HWV A;  2Z8G A;  1QJV A;  1O8F A;  1OGM X;  2NTB A;  4XR6 A;  2VBE A;  2VJJ A;  1PE9 A;  4OJP A;  2VBK A;  1XG2 A;  2O0V A;  1O8E A;  4OZY A;  1AIR A;  1WMR A;  4XLA A;  2X6X A;  4YZA A;  4XL9 A;  2NST A;  4W8S A;  2VJI A;  4XKV A;  1KCC A;  4XKW A;  1O8G A;  3VSU A;  1JTA A;  2EWE A;  3KRG A;  4XLC A;  3ZPP A;  1IDJ A;  1OOC A;  1IA5 A;  2NT9 A;  1BN8 A;  4XOT A;  3B90 A;  1O8D A;  4XM3 A;  3VSV A;  3GRH A;  4XLH A;  3GQA A;  4I84 A;  4OZZ A;  4MXN A;  1O8K A;  3T9G A;  2NSP A;  2INV A;  1O8M A;  2O04 A;  2QX3 A;  2ODL A;  4U49 A;  4XLF A;  2PYH A;  1DBO A;  2O1D A;  1EE6 A;  2BSP A;  3EQO A;  4NK8 A;  2NZM A;  4XN3 A;  2PYG A;  4W8R A;  1KCD A;  1NHC A;  4XQF A;  3VST A;  1QCX A;  4YZQ A;  5C1E A;  1GQ8 A;  4XON A;  4C2L A;  4YEL A;  4Z05 A;  4XNF A; 
#chains in the Genus database with same CATH topology
 2QXZ A;  1PLU A;  1HG8 A;  2X3H A;  3JX8 A;  1OFD A;  4W8T A;  3B4N A;  3LYC A;  2W7Z A;  2X85 A;  3SY2 A;  1L1I A;  4YDT A;  1RU4 A;  3GQ7 A;  5AMV A;  1EA0 A;  4KH3 A;  3EQN A;  4YFO A;  3SYJ A;  2X6Y A;  1LM1 A;  4JRA C;  1TYV A;  3BH6 B;  2INU A;  3LJY A;  1RWR A;  1OFL A;  3N90 A;  3PSS A;  4OJO A;  1X0C A;  3PSZ A;  2VFM A;  4YZX A;  2PEC A;  1JRG A;  4XN0 A;  4XOP A;  1LLZ A;  2O0W A;  1RMG A;  3SUC A;  4MR0 A;  1LLW A;  1K8F A;  3ZSC A;  4W8Q A;  1H80 A;  1TYW A;  1VBL A;  2O17 A;  2UVF A;  2F3L A;  2QYU A;  2VFO A;  2J8I A;  3NB2 A;  4XLE A;  3DU1 X;  4V02 C;  1K5C A;  1DBG A;  4OPW A;  1CZF A;  3JUR A;  4Z06 A;  3SZE A;  4EW9 A;  2BX6 A;  1O88 A;  2NTP A;  3WWG A;  1EZG A;  2VFQ A;  5C1C A;  3VMW A;  4YZ0 A;  4U4B A;  3LMW A;  4PMH A;  1O8H A;  1OGO X;  1QRC A;  2B0R A;  3BH7 B;  2XT2 A;  4XOR A;  1KTW A;  3FY3 A;  4YEJ A;  1O8I A;  2IOU G;  3UW0 A;  2NT6 A;  1O8J A;  1PXZ A;  4AVZ A;  4YEI A;  1OFM A;  5JMC B;  2V5I A;  2X6W A;  1QRB A;  2VBM A;  4NK6 A;  2XTY A;  4XMY A;  3TH0 A;  1IB4 A;  3GQ8 A;  2VFN A;  1TYU A;  3N6Z A;  4Z03 A;  2UVE A;  1QA2 A;  3GQ9 A;  2NTQ A;  2O6W A;  2BM7 A;  3VMV A;  2BM6 A;  1O8L A;  1KCC A;  4URR A;  3B8Y A;  1IDK A;  4OJL A;  2QY1 A;  1BHE A;  2YUH A;  5JLV C;  1KQ5 A;  2IQ7 A;  4OJ6 A;  4OJ5 A;  4HWV A;  2Z8G A;  1QJV A;  1HF2 A;  1O8F A;  1OGM X;  2NTB A;  2BM5 A;  2VBE A;  2VJJ A;  4XR6 A;  4YCQ A;  1DAB A;  1PE9 A;  1QA3 A;  4OJP A;  2VBK A;  1XG2 A;  2O0V A;  5DNS A;  4OM9 A;  2XTX A;  1O8E A;  4OZY A;  1AIR A;  1WMR A;  1QQ1 A;  2X6X A;  4XLA A;  4YZA A;  1TYX A;  2G0Y A;  4XL9 A;  1QA1 A;  2NST A;  4W8S A;  1OFE A;  2VJI A;  4XKV A;  4XKW A;  4YC5 A;  1O8G A;  3VSU A;  1JTA A;  2EWE A;  2VFP A;  3KRG A;  4XLC A;  3H09 A;  1IDJ A;  3ZPP A;  1OOC A;  3SQV A;  1IA5 A;  2NT9 A;  1BN8 A;  3P4G A;  3ML3 A;  4XOT A;  3PET A;  3B90 A;  1O8D A;  4XM3 A;  3VSV A;  3GRH A;  2XT4 A;  4XLH A;  3GQA A;  2QZA A;  4I84 A;  2XC1 A;  4OZZ A;  2BM4 A;  1O8K A;  4MXN A;  3T9G A;  2NSP A;  2INV A;  1O8M A;  2O04 A;  2QX3 A;  3NAW A;  2ODL A;  4U49 A;  4XLF A;  2PYH A;  1DBO A;  2O1D A;  1EE6 A;  2BSP A;  3EQO A;  4NK8 A;  2NZM A;  4XN3 A;  2PYG A;  4W8R A;  1KCD A;  1NHC A;  1CLW A;  4XQF A;  3VST A;  1QCX A;  4YZQ A;  1K4Z A;  3RIQ A;  2J8K A;  5C1E A;  1GQ8 A;  4XON A;  1WXR A;  3AK5 A;  2XTW A;  4C2L A;  4YEL A;  1TSP A;  4Z05 A;  4XNF A; 
#chains in the Genus database with same CATH homology
 2QXZ A;  1PLU A;  1HG8 A;  2X3H A;  4W8T A;  3B4N A;  2X85 A;  1RU4 A;  3GQ7 A;  5AMV A;  3EQN A;  2X6Y A;  2INU A;  1RWR A;  1OFL A;  4OJO A;  1X0C A;  4YZX A;  2PEC A;  1JRG A;  4XN0 A;  4XOP A;  2O0W A;  1RMG A;  3SUC A;  4MR0 A;  3ZSC A;  4W8Q A;  1H80 A;  1VBL A;  2O17 A;  2UVF A;  4XLE A;  1K5C A;  1DBG A;  1CZF A;  3JUR A;  4Z06 A;  4EW9 A;  1O88 A;  2NTP A;  3WWG A;  5C1C A;  3VMW A;  4YZ0 A;  4U4B A;  3LMW A;  4PMH A;  1O8H A;  1OGO X;  4XOR A;  1KTW A;  3FY3 A;  4YEJ A;  1O8I A;  3UW0 A;  2NT6 A;  1O8J A;  1PXZ A;  4AVZ A;  1OFM A;  2X6W A;  2VBM A;  4NK6 A;  4XMY A;  1IB4 A;  3GQ8 A;  4Z03 A;  2UVE A;  3GQ9 A;  2NTQ A;  3VMV A;  1O8L A;  4URR A;  3B8Y A;  1IDK A;  4OJL A;  2QY1 A;  1BHE A;  2IQ7 A;  4OJ6 A;  4OJ5 A;  4HWV A;  2Z8G A;  1QJV A;  1O8F A;  1OGM X;  2NTB A;  4XR6 A;  2VBE A;  2VJJ A;  1PE9 A;  4OJP A;  2VBK A;  1XG2 A;  2O0V A;  1O8E A;  4OZY A;  1AIR A;  1WMR A;  4XLA A;  2X6X A;  4YZA A;  4XL9 A;  2NST A;  4W8S A;  2VJI A;  4XKV A;  1KCC A;  4XKW A;  1O8G A;  3VSU A;  1JTA A;  2EWE A;  3KRG A;  4XLC A;  3ZPP A;  1IDJ A;  1OOC A;  1IA5 A;  2NT9 A;  1BN8 A;  4XOT A;  3B90 A;  1O8D A;  4XM3 A;  3VSV A;  3GRH A;  4XLH A;  3GQA A;  4I84 A;  4OZZ A;  4MXN A;  1O8K A;  3T9G A;  2NSP A;  2INV A;  1O8M A;  2O04 A;  2QX3 A;  2ODL A;  4U49 A;  4XLF A;  2PYH A;  1DBO A;  2O1D A;  1EE6 A;  2BSP A;  3EQO A;  4NK8 A;  2NZM A;  4XN3 A;  2PYG A;  4W8R A;  1KCD A;  1NHC A;  4XQF A;  3VST A;  1QCX A;  4YZQ A;  5C1E A;  1GQ8 A;  4XON A;  4C2L A;  4YEL A;  4Z05 A;  4XNF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...