3V15A

Crystal structure of the fe(ii)/alpha-ketoglutarate dependent taurine dioxygenase from pseudomonas putida kt2440
Total Genus 77
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
77
sequence length
275
structure length
275
Chain Sequence
LTITPLSPALGAQISGVDISRDISAEERDAIEQALLQHQVLFLRDQPINPEQQARFAARFGDLHIHPIYPNVPDTPQVLVLDTAVTDVRDNAVWHTDVTFLPTPALGAVLSAKQLPAYGGDTLWASGIAAFEALSAPLREMLDGLTATHDFTKSFPLERFGTTPQDLARWEATRRNNPPLSHPVVRTHPVSGRKALFVNEGFTTRINELSELESDALLRLLFAHATRPEFSIRWRWQENDVAFWDNRVTQHFAVDDYRPNRRVMHRATILGDAPF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Oxidoreductase
molecule keywords Alpha-ketoglutarate-dependent taurine dioxygenase
publication title The Fe(II) / alpha-ketoglutarate dependent taurine dioxygenases from Pseudomonas putida and Escherichia coli are tetramers
pubmed doi rcsb
source organism Pseudomonas putida
total genus 77
structure length 275
sequence length 275
chains with identical sequence B, C, D
ec nomenclature ec 1.14.11.17: Taurine dioxygenase.
pdb deposition date 2011-12-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02668 TauD Taurine catabolism dioxygenase TauD, TfdA family
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.60.130.10 Alpha Beta 4-Layer Sandwich Double-stranded beta-helix Clavaminate synthase-like 3v15A00
4M2IA 1DS1A 4M27A 3V17A 1GY9A 1NX4A 3EATX 4Y0EA 1GVGA 2WBOA 1OS7A 1DS0A 5J92A 3V15A 5KEUA 1OIJB 4M2FA 2OG5A 4C8RA 1OIIA 2Q4AA 1VZ4A 4M23A 1GQWA 2R6SA 4M2EA 4BG1A 4BGMA 2OG7A 2OG6A 4NE0A 1VZ5A 1OIJC 2WBQA 1JR7A 1NX8A 3PVJA 4J5IA 4BHFA 4C5WA 4M26A 3O2GA 4BHGA 4M2CA 4CWDA 4BGKA 1DRTA 4CVYA 4BHIA 3R1JA 4YLMX 1OTJA 1Y0ZA 1OIJA 3N6WA 3MS5A 4M25A 4OJ8A 3SWTA 2WBPA 5HSXA 4M2GA 1DRYA 4FFAA 1OIHA 1OIKA
chains in the Genus database with same CATH superfamily
4M2IA 1DS1A 4M27A 3V17A 1GY9A 1NX4A 3EATX 4Y0EA 1GVGA 2WBOA 1OS7A 1DS0A 5J92A 3V15A 5KEUA 1OIJB 4M2FA 2OG5A 4C8RA 1OIIA 2Q4AA 1VZ4A 4M23A 1GQWA 2R6SA 4M2EA 4BG1A 4BGMA 1YOXA 2OG7A 2OG6A 4NE0A 1VZ5A 1OIJC 2WBQA 1JR7A 1NX8A 3PVJA 4J5IA 4BHFA 4C5WA 4M26A 3O2GA 4BHGA 4M2CA 4CWDA 4BGKA 1DRTA 4CVYA 4BHIA 3R1JA 4YLMX 1PG6A 1OTJA 1Y0ZA 1OIJA 3N6WA 3MS5A 4M25A 4OJ8A 3SWTA 2WBPA 5HSXA 4M2GA 1DRYA 4FFAA 1OIHA 1OIKA
chains in the Genus database with same CATH topology
1H2LA 4M2IA 4M27A 3V17A 1H2MA 4M2FA 2OG5A 1OIIA 1VZ4A 4Z2WA 2OG7A 1OIJC 2WBQA 4C5WA 2CGOA 1DRTA 4CVYA 4BHIA 3R1JA 1OTJA 1Y0ZA 1OIJA 3MS5A 4B7KA 4FFAA 1DS1A 2WA4A 4Z1VA 1GY9A 3EATX 1GVGA 1MZFA 1OS7A 1DS0A 2WBOA 2Y0IA 1YCIA 2CGNA 4NR1A 4AI8A 3KCXA 1VZ5A 4BIOA 3PVJA 3D8CA 4BHFA 4BHGA 2WA3A 1H2KA 3N6WA 3SWTA 4M25A 1IZ3A 5HSXA 4M2GA 1OIKA 1NX4A 4Y0EA 4C8RA 2Q4AA 1GQWA 2XUMA 2OG6A 4NE0A 5JWPA 4J5IA 3O2GA 4YLMX 1H2NA 4JAAA 2WBPA 1MZEA 2YDEA 1OIHA 2R6SA 5J92A 4B7EA 3V15A 5KEUA 2YC0A 3KCYA 1OIJB 2ILMA 4M23A 4M2EA 4BG1A 4BGMA 3P3NA 3P3PA 1JR7A 1NX8A 2W0XA 4M26A 4M2CA 4CWDA 4BGKA 4OJ8A 1DRYA 3OD4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4M2I A;  1DS1 A;  4M27 A;  3V17 A;  1GY9 A;  1NX4 A;  3EAT X;  4Y0E A;  1GVG A;  2WBO A;  1OS7 A;  1DS0 A;  5J92 A;  3V15 A;  5KEU A;  1OIJ B;  4M2F A;  2OG5 A;  4C8R A;  1OII A;  2Q4A A;  1VZ4 A;  4M23 A;  1GQW A;  2R6S A;  4M2E A;  4BG1 A;  4BGM A;  2OG7 A;  2OG6 A;  4NE0 A;  1VZ5 A;  1OIJ C;  2WBQ A;  1JR7 A;  1NX8 A;  3PVJ A;  4J5I A;  4BHF A;  4C5W A;  4M26 A;  3O2G A;  4BHG A;  4M2C A;  4CWD A;  4BGK A;  1DRT A;  4CVY A;  4BHI A;  3R1J A;  4YLM X;  1OTJ A;  1Y0Z A;  1OIJ A;  3N6W A;  3MS5 A;  4M25 A;  4OJ8 A;  3SWT A;  2WBP A;  5HSX A;  4M2G A;  1DRY A;  4FFA A;  1OIH A;  1OIK A; 
#chains in the Genus database with same CATH topology
 4M2I A;  1DS1 A;  4M27 A;  3V17 A;  1GY9 A;  1NX4 A;  3EAT X;  4Y0E A;  1GVG A;  2WBO A;  1OS7 A;  1DS0 A;  5J92 A;  3V15 A;  5KEU A;  1OIJ B;  4M2F A;  2OG5 A;  4C8R A;  1OII A;  2Q4A A;  1VZ4 A;  4M23 A;  1GQW A;  2R6S A;  4M2E A;  4BG1 A;  4BGM A;  1YOX A;  2OG7 A;  2OG6 A;  4NE0 A;  1VZ5 A;  1OIJ C;  2WBQ A;  1JR7 A;  1NX8 A;  3PVJ A;  4J5I A;  4BHF A;  4C5W A;  4M26 A;  3O2G A;  4BHG A;  4M2C A;  4CWD A;  4BGK A;  1DRT A;  4CVY A;  4BHI A;  3R1J A;  4YLM X;  1PG6 A;  1OTJ A;  1Y0Z A;  1OIJ A;  3N6W A;  3MS5 A;  4M25 A;  4OJ8 A;  3SWT A;  2WBP A;  5HSX A;  4M2G A;  1DRY A;  4FFA A;  1OIH A;  1OIK A; 
#chains in the Genus database with same CATH homology
 1H2L A;  4M2I A;  4M27 A;  3V17 A;  1H2M A;  4M2F A;  2OG5 A;  1OII A;  1VZ4 A;  4Z2W A;  2OG7 A;  1OIJ C;  2WBQ A;  4C5W A;  2CGO A;  1DRT A;  4CVY A;  4BHI A;  3R1J A;  1OTJ A;  1Y0Z A;  1OIJ A;  3MS5 A;  4B7K A;  4FFA A;  1DS1 A;  2WA4 A;  4Z1V A;  1GY9 A;  3EAT X;  1GVG A;  1MZF A;  1OS7 A;  1DS0 A;  2WBO A;  2Y0I A;  1YCI A;  2CGN A;  4NR1 A;  4AI8 A;  3KCX A;  1VZ5 A;  4BIO A;  3PVJ A;  3D8C A;  4BHF A;  4BHG A;  2WA3 A;  1H2K A;  3N6W A;  3SWT A;  4M25 A;  1IZ3 A;  5HSX A;  4M2G A;  1OIK A;  1NX4 A;  4Y0E A;  4C8R A;  2Q4A A;  1GQW A;  2XUM A;  2OG6 A;  4NE0 A;  5JWP A;  4J5I A;  3O2G A;  4YLM X;  1H2N A;  4JAA A;  2WBP A;  1MZE A;  2YDE A;  1OIH A;  2R6S A;  5J92 A;  4B7E A;  3V15 A;  5KEU A;  2YC0 A;  3KCY A;  1OIJ B;  2ILM A;  4M23 A;  4M2E A;  4BG1 A;  4BGM A;  3P3N A;  3P3P A;  1JR7 A;  1NX8 A;  2W0X A;  4M26 A;  4M2C A;  4CWD A;  4BGK A;  4OJ8 A;  1DRY A;  3OD4 A; 
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similar chains in the pdb database (?% sequence similarity)

 
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