3V20A

Crystal structure of type iif restriction endonuclease bse634i with cognate dna
Total Genus 97
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
97
sequence length
290
structure length
290
Chain Sequence
TNLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein, hydrolase/dna
source organism Geobacillus stearothermophilus
publication title Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease.
pubmed doi rcsb
molecule keywords Endonuclease Bse634IR
total genus 97
structure length 290
sequence length 290
chains with identical sequence B
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2011-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07832 Bse634I Cfr10I/Bse634I restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.10 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 3v20A00
1KNVA 3DW9A 1CFRA 3V20A 3N7BA 3N78A 3DVOA 3V1ZA 3V21A 3DPGA 3MQYA 3MQ6A 1DC1A
chains in the Genus database with same CATH superfamily
1ESGA 4NFZA 3HW3A 3BM3A 4CGXA 4E5LA 5D2OA 5CCYA 5DESA 3A4KA 4CHCA 1FOKA 4AVGA 2E52A 3N78A 4AWKA 4E5IA 4ZQQA 1VRRA 4ZHZA 5CL0A 4E5JA 4E5GA 1SDOA 2PFJA 5D9JA 2P0JA 2BAMA 1BAMA 4AWFA 4E5HA 3WVHA 4OC8A 1KNVA 2FOKA 2GB7A 5JHVA 3DPGA 3HW5A 2FQZA 2EWFA 5EGAA 1FZRA 3MQYA 4AWGA 3HW4A 3DW9A 4AVLA 1CFRA 2XI5A 3WVIA 3V20A 5D4GA 1DC1A 4AWMA 4AVQA 3EBJA 5D8UA 5D42A 4F0QA 4YYLA 1D2IA 1BHMA 3N7BA 4E5FA 3WVPA 5CZNA 2P14A 3CAEA 3V21A 2XI7A 1ES8A 3BAMA 4E5EA 5DBSA 3MQ6A 3WVKA 5CGVA 3WVGA 5FDGA 1M0DA 4F0PA 4R28A 3V1ZA 5I13A 5DEBA 3HW6A 1M0IA 4CGSA 5FDDA 5JHTA 3DVOA 1DFMA 4ZI0A 3ODHA 4AWHA
chains in the Genus database with same CATH topology
1ESGA 4NFZA 3HW3A 3BM3A 4CGXA 4E5LA 5D2OA 5CCYA 5DESA 3A4KA 4CHCA 1FOKA 4AVGA 2E52A 3N78A 4AWKA 4E5IA 4ZQQA 1VRRA 4ZHZA 5CL0A 4E5JA 4E5GA 1SDOA 2PFJA 5D9JA 2P0JA 2BAMA 1BAMA 4AWFA 4E5HA 3WVHA 4OC8A 1KNVA 2FOKA 2GB7A 5JHVA 3DPGA 3HW5A 2FQZA 2EWFA 5EGAA 1FZRA 3MQYA 4AWGA 3HW4A 3DW9A 4AVLA 1CFRA 2XI5A 3WVIA 3V20A 5D4GA 1DC1A 4AWMA 4AVQA 3EBJA 5D8UA 5D42A 4F0QA 4YYLA 1D2IA 1BHMA 3N7BA 4E5FA 3WVPA 5CZNA 2P14A 3CAEA 3V21A 2XI7A 1ES8A 3BAMA 4E5EA 5DBSA 3MQ6A 3WVKA 5CGVA 3WVGA 5FDGA 1M0DA 4F0PA 4R28A 3V1ZA 5I13A 5DEBA 3HW6A 1M0IA 4CGSA 5FDDA 5JHTA 3DVOA 1DFMA 4ZI0A 3ODHA 4AWHA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1KNV A;  3DW9 A;  1CFR A;  3V20 A;  3N7B A;  3N78 A;  3DVO A;  3V1Z A;  3V21 A;  3DPG A;  3MQY A;  3MQ6 A;  1DC1 A; 
#chains in the Genus database with same CATH topology
 1ESG A;  4NFZ A;  3HW3 A;  3BM3 A;  4CGX A;  4E5L A;  5D2O A;  5CCY A;  5DES A;  3A4K A;  4CHC A;  1FOK A;  4AVG A;  2E52 A;  3N78 A;  4AWK A;  4E5I A;  4ZQQ A;  1VRR A;  4ZHZ A;  5CL0 A;  4E5J A;  4E5G A;  1SDO A;  2PFJ A;  5D9J A;  2P0J A;  2BAM A;  1BAM A;  4AWF A;  4E5H A;  3WVH A;  4OC8 A;  1KNV A;  2FOK A;  2GB7 A;  5JHV A;  3DPG A;  3HW5 A;  2FQZ A;  2EWF A;  5EGA A;  1FZR A;  3MQY A;  4AWG A;  3HW4 A;  3DW9 A;  4AVL A;  1CFR A;  2XI5 A;  3WVI A;  3V20 A;  5D4G A;  1DC1 A;  4AWM A;  4AVQ A;  3EBJ A;  5D8U A;  5D42 A;  4F0Q A;  4YYL A;  1D2I A;  1BHM A;  3N7B A;  4E5F A;  3WVP A;  5CZN A;  2P14 A;  3CAE A;  3V21 A;  2XI7 A;  1ES8 A;  3BAM A;  4E5E A;  5DBS A;  3MQ6 A;  3WVK A;  5CGV A;  3WVG A;  5FDG A;  1M0D A;  4F0P A;  4R28 A;  3V1Z A;  5I13 A;  5DEB A;  3HW6 A;  1M0I A;  4CGS A;  5FDD A;  5JHT A;  3DVO A;  1DFM A;  4ZI0 A;  3ODH A;  4AWH A; 
#chains in the Genus database with same CATH homology
 1ESG A;  4NFZ A;  3HW3 A;  3BM3 A;  4CGX A;  4E5L A;  5D2O A;  5CCY A;  5DES A;  3A4K A;  4CHC A;  1FOK A;  4AVG A;  2E52 A;  3N78 A;  4AWK A;  4E5I A;  4ZQQ A;  1VRR A;  4ZHZ A;  5CL0 A;  4E5J A;  4E5G A;  1SDO A;  2PFJ A;  5D9J A;  2P0J A;  2BAM A;  1BAM A;  4AWF A;  4E5H A;  3WVH A;  4OC8 A;  1KNV A;  2FOK A;  2GB7 A;  5JHV A;  3DPG A;  3HW5 A;  2FQZ A;  2EWF A;  5EGA A;  1FZR A;  3MQY A;  4AWG A;  3HW4 A;  3DW9 A;  4AVL A;  1CFR A;  2XI5 A;  3WVI A;  3V20 A;  5D4G A;  1DC1 A;  4AWM A;  4AVQ A;  3EBJ A;  5D8U A;  5D42 A;  4F0Q A;  4YYL A;  1D2I A;  1BHM A;  3N7B A;  4E5F A;  3WVP A;  5CZN A;  2P14 A;  3CAE A;  3V21 A;  2XI7 A;  1ES8 A;  3BAM A;  4E5E A;  5DBS A;  3MQ6 A;  3WVK A;  5CGV A;  3WVG A;  5FDG A;  1M0D A;  4F0P A;  4R28 A;  3V1Z A;  5I13 A;  5DEB A;  3HW6 A;  1M0I A;  4CGS A;  5FDD A;  5JHT A;  3DVO A;  1DFM A;  4ZI0 A;  3ODH A;  4AWH A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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