3V21A

Crystal structure of type iif restriction endonuclease bse634i with cognate dna
Total Genus 99
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
99
sequence length
289
structure length
289
Chain Sequence
NLTNSNCVEEYKENGKTKIRIKPFNALIELYHHQTPTGSIKENLDKLENYVKDVVKAKGLAIPTSGAFSNTRGTWFEVMIAIQSWNYRVKRELNDYLIIKMPNVKTFDFRKIFDNETREKLHQLEKSLLTHKQQVRLITSNPDLLIIRQKDLIKSEYNLPINKLTHENIDVALTLFKDIEGKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEPVSKADDDALQTAATHTIVNVNSTPERAVDDIFSLTSFEDIDKMLDQIIK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Dna binding protein, hydrolase/dna
molecule keywords Endonuclease Bse634IR
publication title Structural mechanisms of the degenerate sequence recognition by Bse634I restriction endonuclease.
pubmed doi rcsb
source organism Geobacillus stearothermophilus
total genus 99
structure length 289
sequence length 289
chains with identical sequence B, C, D, E, F, G, H
ec nomenclature ec 3.1.21.4: Type II site-specific deoxyribonuclease.
pdb deposition date 2011-12-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF07832 Bse634I Cfr10I/Bse634I restriction endonuclease
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.91.10 Alpha Beta 3-Layer(aba) Sandwich Restriction Endonuclease Restriction Endonuclease 3v21A00
3DW9A 3V20A 3MQYA 1DC1A 1KNVA 3N7BA 3DPGA 1CFRA 3DVOA 3V21A 3V1ZA 3MQ6A 3N78A
chains in the Genus database with same CATH superfamily
4AWMA 1M0DA 4ZHZA 3A4KA 5D4GA 3DW9A 5JHTA 3EBJA 4CGXA 4AVGA 2P0JA 1BHMA 1KNVA 4AWKA 4AWGA 2XI7A 4F0PA 1ES8A 4AWHA 5CL0A 5EGAA 3N7BA 3WVIA 4AVLA 1M0IA 5FDGA 4NFZA 5JHVA 3BAMA 4ZQQA 4OC8A 5DEBA 1FZRA 3CAEA 1VRRA 5FDDA 5D2OA 2XI5A 3MQ6A 4YYLA 2E52A 5CGVA 1D2IA 3V1ZA 3N78A 5DBSA 2P14A 3V21A 2PFJA 4E5JA 3WVHA 3HW5A 3WVGA 3HW3A 5D8UA 3V20A 4CHCA 4E5HA 3DVOA 4AVQA 3MQYA 3ODHA 2FQZA 5I13A 3DPGA 5DESA 3HW6A 5D42A 2GB7A 4E5EA 5CCYA 4CGSA 2BAMA 5D9JA 3WVKA 4AWFA 4R28A 1DC1A 4E5FA 1FOKA 3WVPA 2FOKA 1SDOA 2EWFA 4E5IA 4E5GA 5CZNA 1BAMA 1DFMA 4F0QA 4ZI0A 1ESGA 1CFRA 4E5LA 3BM3A 3HW4A
chains in the Genus database with same CATH topology
4AWMA 1M0DA 4ZHZA 3A4KA 5D4GA 3DW9A 5JHTA 3EBJA 4CGXA 4AVGA 2P0JA 1BHMA 1KNVA 4AWKA 4AWGA 2XI7A 4F0PA 1ES8A 4AWHA 5CL0A 5EGAA 3N7BA 3WVIA 4AVLA 1M0IA 5FDGA 4NFZA 5JHVA 3BAMA 4ZQQA 4OC8A 5DEBA 1FZRA 3CAEA 1VRRA 5FDDA 5D2OA 2XI5A 3MQ6A 4YYLA 2E52A 5CGVA 1D2IA 3V1ZA 3N78A 5DBSA 2P14A 3V21A 2PFJA 4E5JA 3WVHA 3HW5A 3WVGA 3HW3A 5D8UA 3V20A 4CHCA 4E5HA 3DVOA 4AVQA 3MQYA 3ODHA 2FQZA 5I13A 3DPGA 5DESA 3HW6A 5D42A 2GB7A 4E5EA 5CCYA 4CGSA 2BAMA 5D9JA 3WVKA 4AWFA 4R28A 1DC1A 4E5FA 1FOKA 3WVPA 2FOKA 1SDOA 2EWFA 4E5IA 4E5GA 5CZNA 1BAMA 1DFMA 4F0QA 4ZI0A 1ESGA 1CFRA 4E5LA 3BM3A 3HW4A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3DW9 A;  3V20 A;  3MQY A;  1DC1 A;  1KNV A;  3N7B A;  3DPG A;  1CFR A;  3DVO A;  3V21 A;  3V1Z A;  3MQ6 A;  3N78 A; 
#chains in the Genus database with same CATH topology
 4AWM A;  1M0D A;  4ZHZ A;  3A4K A;  5D4G A;  3DW9 A;  5JHT A;  3EBJ A;  4CGX A;  4AVG A;  2P0J A;  1BHM A;  1KNV A;  4AWK A;  4AWG A;  2XI7 A;  4F0P A;  1ES8 A;  4AWH A;  5CL0 A;  5EGA A;  3N7B A;  3WVI A;  4AVL A;  1M0I A;  5FDG A;  4NFZ A;  5JHV A;  3BAM A;  4ZQQ A;  4OC8 A;  5DEB A;  1FZR A;  3CAE A;  1VRR A;  5FDD A;  5D2O A;  2XI5 A;  3MQ6 A;  4YYL A;  2E52 A;  5CGV A;  1D2I A;  3V1Z A;  3N78 A;  5DBS A;  2P14 A;  3V21 A;  2PFJ A;  4E5J A;  3WVH A;  3HW5 A;  3WVG A;  3HW3 A;  5D8U A;  3V20 A;  4CHC A;  4E5H A;  3DVO A;  4AVQ A;  3MQY A;  3ODH A;  2FQZ A;  5I13 A;  3DPG A;  5DES A;  3HW6 A;  5D42 A;  2GB7 A;  4E5E A;  5CCY A;  4CGS A;  2BAM A;  5D9J A;  3WVK A;  4AWF A;  4R28 A;  1DC1 A;  4E5F A;  1FOK A;  3WVP A;  2FOK A;  1SDO A;  2EWF A;  4E5I A;  4E5G A;  5CZN A;  1BAM A;  1DFM A;  4F0Q A;  4ZI0 A;  1ESG A;  1CFR A;  4E5L A;  3BM3 A;  3HW4 A; 
#chains in the Genus database with same CATH homology
 4AWM A;  1M0D A;  4ZHZ A;  3A4K A;  5D4G A;  3DW9 A;  5JHT A;  3EBJ A;  4CGX A;  4AVG A;  2P0J A;  1BHM A;  1KNV A;  4AWK A;  4AWG A;  2XI7 A;  4F0P A;  1ES8 A;  4AWH A;  5CL0 A;  5EGA A;  3N7B A;  3WVI A;  4AVL A;  1M0I A;  5FDG A;  4NFZ A;  5JHV A;  3BAM A;  4ZQQ A;  4OC8 A;  5DEB A;  1FZR A;  3CAE A;  1VRR A;  5FDD A;  5D2O A;  2XI5 A;  3MQ6 A;  4YYL A;  2E52 A;  5CGV A;  1D2I A;  3V1Z A;  3N78 A;  5DBS A;  2P14 A;  3V21 A;  2PFJ A;  4E5J A;  3WVH A;  3HW5 A;  3WVG A;  3HW3 A;  5D8U A;  3V20 A;  4CHC A;  4E5H A;  3DVO A;  4AVQ A;  3MQY A;  3ODH A;  2FQZ A;  5I13 A;  3DPG A;  5DES A;  3HW6 A;  5D42 A;  2GB7 A;  4E5E A;  5CCY A;  4CGS A;  2BAM A;  5D9J A;  3WVK A;  4AWF A;  4R28 A;  1DC1 A;  4E5F A;  1FOK A;  3WVP A;  2FOK A;  1SDO A;  2EWF A;  4E5I A;  4E5G A;  5CZN A;  1BAM A;  1DFM A;  4F0Q A;  4ZI0 A;  1ESG A;  1CFR A;  4E5L A;  3BM3 A;  3HW4 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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