3V2AA

Vegfr-2/vegf-a complex structure
Total Genus 13
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
13
sequence length
95
structure length
95
Chain Sequence
EVVKFMDVYQRSYCHPIETLVDIFQEYPDEIEYIFKPSCVPLMRCGGCCNDEGLECVPTEESNITMQIMRIKPHQGQHIGEMSFLQHNKCECRPK
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Hormone/signaling protein
molecule keywords Vascular endothelial growth factor receptor 2
publication title Thermodynamic and structural description of allosterically regulated VEGFR-2 dimerization.
pubmed doi rcsb
source organism Homo sapiens
total genus 13
structure length 95
sequence length 95
ec nomenclature
pdb deposition date 2011-12-12

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00341 PDGF PDGF/VEGF domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.10.90.10 Mainly Beta Ribbon Cystine Knot Cytokines, subunit B Cystine-knot cytokines 3v2aA00
4FAOA 4ZBNA 3S1BV 2QCWA 4X1JA 2B0UA 3B4VA 2VPFA 1SG1A 2GYRA 1M4UA 1HRPA 3P9WA 2XACA 4QAFC 1NYSB 5BQCA 1TZIV 5FV2V 4QHUC 4LXRJ 1BJ1V 5F3HI 4AY9B 1B8MB 4HR9A 1BNDA 3EO1C 5HI3A 1ES7A 1MJVA 1REWA 1REUA 4KZNA 2C7WA 4QCIC 1KTZA 1QFWB 1SGFB 2ASKA 5HHXA 3RJRA 1WQ9A 4N1DA 5HI5A 1CZ8V 4MQWA 4UI2B 1KLCA 1NT3A 1XWDA 2QR0C 3IJ2A 4GLSE 5BQBA 2FJGV 1FL7A 3QTKA 5E4GA 2ARVA 2GOOA 3S1KV 4UHZA 4HSAA 1LXIA 3MJGA 2FJHV 3BDYV 5F3BC 1HCNA 5BQ8A 4EDXV 1HRPB 2GNNA 1S4YB 1WWWV 2IFGE 3BUKA 1ZKZA 2R53A 1M4UL 4MIDA 4KXZA 3KFDA 4EDWV 2PJYA 4HQXA 4XPJA 1FLTV 2GYZA 2KD3A 2QJ9A 1BNDB 1BTGA 5BPUA 1MKGA 5BQEB 4EC7A 5HHVA 1NYUB 5HK5A 2X1XE 2ARPA 4WPBA 4UHYA 1TFGA 4UI1A 4KV5A 5BQ8D 3JVFA 3EVSB 3SEKB 1WQ9B 1QFWA 2XV7A 4BV4L 3BK3A 3E07A 1BMPA 4MQWB 1XWDB 1E9JA 2H64A 3MJKA 1KATW 1B98A 4UI0A 1FL7B 1JPYA 3V2AA 5HHDA 1DZ7A 2P6AA 3QB4A 1LX5A 1AGQA 4YCGC 1WQ8A 1B8KA 5HI4A 1TGJA 1TGKA 2V5EB 2GH0C 2VXSA 1HCNB 5AEJA 5BQ8B 4AY9A 2QJBA 1B8MA 5JZ7A 1FZVA 1AOCA 1VPFA 4MPLA 1PDGA 2X1WA 3BMPA 1HCFA 1QTYR 2BHKA 2R52A 2VWEA 4HQUA 1VPPV 4YCIC 5HK5E 2H62A 2QJAA 4EFVA 5HHCA 3V6BA 3FUBB 4EAXA 5BQEA 4GLNE 1BETA 1KLAA 2QCQA 5FV1V 4LXSJ 1HD4A 3HH2A 1WAQA 4ZFFC 1MKKA 2TGIA 1RV6V 1TZHV
chains in the Genus database with same CATH superfamily
4FAOA 4ZBNA 3S1BV 2QCWA 4X1JA 2B0UA 3B4VA 2VPFA 1SG1A 2GYRA 1M4UA 1HRPA 3P9WA 2XACA 4QAFC 1NYSB 5BQCA 1TZIV 5FV2V 4QHUC 4LXRJ 1BJ1V 5F3HI 4AY9B 1B8MB 4HR9A 1BNDA 3EO1C 5HI3A 1ES7A 1MJVA 1REWA 1REUA 4KZNA 2C7WA 4QCIC 1KTZA 1QFWB 1SGFB 2ASKA 5HHXA 3RJRA 1WQ9A 4N1DA 5HI5A 1CZ8V 4MQWA 4UI2B 1KLCA 1NT3A 1XWDA 2QR0C 3IJ2A 4GLSE 5BQBA 2FJGV 1FL7A 3QTKA 5E4GA 2ARVA 2GOOA 3S1KV 4UHZA 4HSAA 1LXIA 3MJGA 2FJHV 3BDYV 5F3BC 1HCNA 5BQ8A 4EDXV 1HRPB 2GNNA 1S4YB 1WWWV 2IFGE 3BUKA 1ZKZA 2R53A 1M4UL 4MIDA 4KXZA 3KFDA 4EDWV 2PJYA 4HQXA 4XPJA 1FLTV 2GYZA 2KD3A 2QJ9A 1BNDB 1BTGA 5BPUA 1MKGA 5BQEB 4EC7A 5HHVA 1NYUB 5HK5A 2X1XE 2ARPA 4WPBA 4UHYA 1TFGA 4UI1A 4KV5A 5BQ8D 3JVFA 3EVSB 3SEKB 1WQ9B 1QFWA 2XV7A 4BV4L 3BK3A 3E07A 1BMPA 4MQWB 1XWDB 1E9JA 2H64A 3MJKA 1KATW 1B98A 4UI0A 1FL7B 1JPYA 3V2AA 5HHDA 1DZ7A 2P6AA 3QB4A 1LX5A 1AGQA 4YCGC 1WQ8A 1B8KA 5HI4A 1TGJA 1TGKA 2V5EB 2GH0C 2VXSA 1HCNB 5AEJA 5BQ8B 4AY9A 2QJBA 1B8MA 5JZ7A 1FZVA 1AOCA 1VPFA 4MPLA 1PDGA 2X1WA 3BMPA 1HCFA 1QTYR 2BHKA 2R52A 2VWEA 4HQUA 1VPPV 4YCIC 5HK5E 2H62A 2QJAA 4EFVA 5HHCA 3V6BA 3FUBB 4EAXA 5BQEA 4GLNE 1BETA 1KLAA 2QCQA 5FV1V 4LXSJ 1HD4A 3HH2A 1WAQA 4ZFFC 1MKKA 2TGIA 1RV6V 1TZHV
chains in the Genus database with same CATH topology
4FAOA 4ZBNA 3S1BV 2QCWA 4X1JA 2B0UA 3B4VA 2VPFA 1SG1A 2GYRA 1M4UA 1HRPA 3P9WA 2XACA 4QAFC 1NYSB 5BQCA 1TZIV 5FV2V 4QHUC 4LXRJ 1BJ1V 5F3HI 4AY9B 1B8MB 4HR9A 1BNDA 3EO1C 5HI3A 1ES7A 1MJVA 1REWA 1REUA 4KZNA 2C7WA 4QCIC 1KTZA 1QFWB 1SGFB 2ASKA 5HHXA 3RJRA 1WQ9A 4N1DA 5HI5A 1CZ8V 4MQWA 4UI2B 1KLCA 1NT3A 1XWDA 2QR0C 3IJ2A 4GLSE 5BQBA 2FJGV 1FL7A 3QTKA 5E4GA 2ARVA 2GOOA 3S1KV 4UHZA 4HSAA 1LXIA 3MJGA 2FJHV 3BDYV 5F3BC 1HCNA 5BQ8A 4EDXV 1HRPB 2GNNA 1S4YB 1WWWV 2IFGE 3BUKA 1ZKZA 2R53A 1M4UL 4MIDA 4KXZA 3KFDA 4EDWV 2PJYA 4HQXA 4XPJA 1FLTV 2GYZA 2KD3A 2QJ9A 1BNDB 1BTGA 5BPUA 1MKGA 5BQEB 4EC7A 5HHVA 1NYUB 5HK5A 2X1XE 2ARPA 4WPBA 4UHYA 1TFGA 4UI1A 4KV5A 5BQ8D 3JVFA 3EVSB 3SEKB 1WQ9B 1QFWA 2XV7A 4BV4L 3BK3A 3E07A 1BMPA 4MQWB 1XWDB 1E9JA 2H64A 3MJKA 1KATW 1B98A 4UI0A 1FL7B 1JPYA 3V2AA 5HHDA 1DZ7A 2P6AA 3QB4A 1LX5A 1AGQA 4YCGC 1WQ8A 1B8KA 5HI4A 1TGJA 1TGKA 2V5EB 2GH0C 2VXSA 1HCNB 5AEJA 5BQ8B 4AY9A 2QJBA 1B8MA 5JZ7A 1FZVA 1AOCA 1VPFA 4MPLA 1PDGA 2X1WA 3BMPA 1HCFA 1QTYR 2BHKA 2R52A 2VWEA 4HQUA 1VPPV 4YCIC 5HK5E 2H62A 2QJAA 4EFVA 5HHCA 3V6BA 3FUBB 4EAXA 5BQEA 4GLNE 1BETA 1KLAA 2QCQA 5FV1V 4LXSJ 1HD4A 3HH2A 1WAQA 4ZFFC 1MKKA 2TGIA 1RV6V 1TZHV
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4FAO A;  4ZBN A;  3S1B V;  2QCW A;  4X1J A;  2B0U A;  3B4V A;  2VPF A;  1SG1 A;  2GYR A;  1M4U A;  1HRP A;  3P9W A;  2XAC A;  4QAF C;  1NYS B;  5BQC A;  1TZI V;  5FV2 V;  4QHU C;  4LXR J;  1BJ1 V;  5F3H I;  4AY9 B;  1B8M B;  4HR9 A;  1BND A;  3EO1 C;  5HI3 A;  1ES7 A;  1MJV A;  1REW A;  1REU A;  4KZN A;  2C7W A;  4QCI C;  1KTZ A;  1QFW B;  1SGF B;  2ASK A;  5HHX A;  3RJR A;  1WQ9 A;  4N1D A;  5HI5 A;  1CZ8 V;  4MQW A;  4UI2 B;  1KLC A;  1NT3 A;  1XWD A;  2QR0 C;  3IJ2 A;  4GLS E;  5BQB A;  2FJG V;  1FL7 A;  3QTK A;  5E4G A;  2ARV A;  2GOO A;  3S1K V;  4UHZ A;  4HSA A;  1LXI A;  3MJG A;  2FJH V;  3BDY V;  5F3B C;  1HCN A;  5BQ8 A;  4EDX V;  1HRP B;  2GNN A;  1S4Y B;  1WWW V;  2IFG E;  3BUK A;  1ZKZ A;  2R53 A;  1M4U L;  4MID A;  4KXZ A;  3KFD A;  4EDW V;  2PJY A;  4HQX A;  4XPJ A;  1FLT V;  2GYZ A;  2KD3 A;  2QJ9 A;  1BND B;  1BTG A;  5BPU A;  1MKG A;  5BQE B;  4EC7 A;  5HHV A;  1NYU B;  5HK5 A;  2X1X E;  2ARP A;  4WPB A;  4UHY A;  1TFG A;  4UI1 A;  4KV5 A;  5BQ8 D;  3JVF A;  3EVS B;  3SEK B;  1WQ9 B;  1QFW A;  2XV7 A;  4BV4 L;  3BK3 A;  3E07 A;  1BMP A;  4MQW B;  1XWD B;  1E9J A;  2H64 A;  3MJK A;  1KAT W;  1B98 A;  4UI0 A;  1FL7 B;  1JPY A;  3V2A A;  5HHD A;  1DZ7 A;  2P6A A;  3QB4 A;  1LX5 A;  1AGQ A;  4YCG C;  1WQ8 A;  1B8K A;  5HI4 A;  1TGJ A;  1TGK A;  2V5E B;  2GH0 C;  2VXS A;  1HCN B;  5AEJ A;  5BQ8 B;  4AY9 A;  2QJB A;  1B8M A;  5JZ7 A;  1FZV A;  1AOC A;  1VPF A;  4MPL A;  1PDG A;  2X1W A;  3BMP A;  1HCF A;  1QTY R;  2BHK A;  2R52 A;  2VWE A;  4HQU A;  1VPP V;  4YCI C;  5HK5 E;  2H62 A;  2QJA A;  4EFV A;  5HHC A;  3V6B A;  3FUB B;  4EAX A;  5BQE A;  4GLN E;  1BET A;  1KLA A;  2QCQ A;  5FV1 V;  4LXS J;  1HD4 A;  3HH2 A;  1WAQ A;  4ZFF C;  1MKK A;  2TGI A;  1RV6 V;  1TZH V; 
#chains in the Genus database with same CATH topology
 4FAO A;  4ZBN A;  3S1B V;  2QCW A;  4X1J A;  2B0U A;  3B4V A;  2VPF A;  1SG1 A;  2GYR A;  1M4U A;  1HRP A;  3P9W A;  2XAC A;  4QAF C;  1NYS B;  5BQC A;  1TZI V;  5FV2 V;  4QHU C;  4LXR J;  1BJ1 V;  5F3H I;  4AY9 B;  1B8M B;  4HR9 A;  1BND A;  3EO1 C;  5HI3 A;  1ES7 A;  1MJV A;  1REW A;  1REU A;  4KZN A;  2C7W A;  4QCI C;  1KTZ A;  1QFW B;  1SGF B;  2ASK A;  5HHX A;  3RJR A;  1WQ9 A;  4N1D A;  5HI5 A;  1CZ8 V;  4MQW A;  4UI2 B;  1KLC A;  1NT3 A;  1XWD A;  2QR0 C;  3IJ2 A;  4GLS E;  5BQB A;  2FJG V;  1FL7 A;  3QTK A;  5E4G A;  2ARV A;  2GOO A;  3S1K V;  4UHZ A;  4HSA A;  1LXI A;  3MJG A;  2FJH V;  3BDY V;  5F3B C;  1HCN A;  5BQ8 A;  4EDX V;  1HRP B;  2GNN A;  1S4Y B;  1WWW V;  2IFG E;  3BUK A;  1ZKZ A;  2R53 A;  1M4U L;  4MID A;  4KXZ A;  3KFD A;  4EDW V;  2PJY A;  4HQX A;  4XPJ A;  1FLT V;  2GYZ A;  2KD3 A;  2QJ9 A;  1BND B;  1BTG A;  5BPU A;  1MKG A;  5BQE B;  4EC7 A;  5HHV A;  1NYU B;  5HK5 A;  2X1X E;  2ARP A;  4WPB A;  4UHY A;  1TFG A;  4UI1 A;  4KV5 A;  5BQ8 D;  3JVF A;  3EVS B;  3SEK B;  1WQ9 B;  1QFW A;  2XV7 A;  4BV4 L;  3BK3 A;  3E07 A;  1BMP A;  4MQW B;  1XWD B;  1E9J A;  2H64 A;  3MJK A;  1KAT W;  1B98 A;  4UI0 A;  1FL7 B;  1JPY A;  3V2A A;  5HHD A;  1DZ7 A;  2P6A A;  3QB4 A;  1LX5 A;  1AGQ A;  4YCG C;  1WQ8 A;  1B8K A;  5HI4 A;  1TGJ A;  1TGK A;  2V5E B;  2GH0 C;  2VXS A;  1HCN B;  5AEJ A;  5BQ8 B;  4AY9 A;  2QJB A;  1B8M A;  5JZ7 A;  1FZV A;  1AOC A;  1VPF A;  4MPL A;  1PDG A;  2X1W A;  3BMP A;  1HCF A;  1QTY R;  2BHK A;  2R52 A;  2VWE A;  4HQU A;  1VPP V;  4YCI C;  5HK5 E;  2H62 A;  2QJA A;  4EFV A;  5HHC A;  3V6B A;  3FUB B;  4EAX A;  5BQE A;  4GLN E;  1BET A;  1KLA A;  2QCQ A;  5FV1 V;  4LXS J;  1HD4 A;  3HH2 A;  1WAQ A;  4ZFF C;  1MKK A;  2TGI A;  1RV6 V;  1TZH V; 
#chains in the Genus database with same CATH homology
 4FAO A;  4ZBN A;  3S1B V;  2QCW A;  4X1J A;  2B0U A;  3B4V A;  2VPF A;  1SG1 A;  2GYR A;  1M4U A;  1HRP A;  3P9W A;  2XAC A;  4QAF C;  1NYS B;  5BQC A;  1TZI V;  5FV2 V;  4QHU C;  4LXR J;  1BJ1 V;  5F3H I;  4AY9 B;  1B8M B;  4HR9 A;  1BND A;  3EO1 C;  5HI3 A;  1ES7 A;  1MJV A;  1REW A;  1REU A;  4KZN A;  2C7W A;  4QCI C;  1KTZ A;  1QFW B;  1SGF B;  2ASK A;  5HHX A;  3RJR A;  1WQ9 A;  4N1D A;  5HI5 A;  1CZ8 V;  4MQW A;  4UI2 B;  1KLC A;  1NT3 A;  1XWD A;  2QR0 C;  3IJ2 A;  4GLS E;  5BQB A;  2FJG V;  1FL7 A;  3QTK A;  5E4G A;  2ARV A;  2GOO A;  3S1K V;  4UHZ A;  4HSA A;  1LXI A;  3MJG A;  2FJH V;  3BDY V;  5F3B C;  1HCN A;  5BQ8 A;  4EDX V;  1HRP B;  2GNN A;  1S4Y B;  1WWW V;  2IFG E;  3BUK A;  1ZKZ A;  2R53 A;  1M4U L;  4MID A;  4KXZ A;  3KFD A;  4EDW V;  2PJY A;  4HQX A;  4XPJ A;  1FLT V;  2GYZ A;  2KD3 A;  2QJ9 A;  1BND B;  1BTG A;  5BPU A;  1MKG A;  5BQE B;  4EC7 A;  5HHV A;  1NYU B;  5HK5 A;  2X1X E;  2ARP A;  4WPB A;  4UHY A;  1TFG A;  4UI1 A;  4KV5 A;  5BQ8 D;  3JVF A;  3EVS B;  3SEK B;  1WQ9 B;  1QFW A;  2XV7 A;  4BV4 L;  3BK3 A;  3E07 A;  1BMP A;  4MQW B;  1XWD B;  1E9J A;  2H64 A;  3MJK A;  1KAT W;  1B98 A;  4UI0 A;  1FL7 B;  1JPY A;  3V2A A;  5HHD A;  1DZ7 A;  2P6A A;  3QB4 A;  1LX5 A;  1AGQ A;  4YCG C;  1WQ8 A;  1B8K A;  5HI4 A;  1TGJ A;  1TGK A;  2V5E B;  2GH0 C;  2VXS A;  1HCN B;  5AEJ A;  5BQ8 B;  4AY9 A;  2QJB A;  1B8M A;  5JZ7 A;  1FZV A;  1AOC A;  1VPF A;  4MPL A;  1PDG A;  2X1W A;  3BMP A;  1HCF A;  1QTY R;  2BHK A;  2R52 A;  2VWE A;  4HQU A;  1VPP V;  4YCI C;  5HK5 E;  2H62 A;  2QJA A;  4EFV A;  5HHC A;  3V6B A;  3FUB B;  4EAX A;  5BQE A;  4GLN E;  1BET A;  1KLA A;  2QCQ A;  5FV1 V;  4LXS J;  1HD4 A;  3HH2 A;  1WAQ A;  4ZFF C;  1MKK A;  2TGI A;  1RV6 V;  1TZH V; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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