3V45A

Crystal structure of de novo designed serine hydrolase osh55, northeast structural genomics consortium target or130
Total Genus 56
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
56
sequence length
166
structure length
166
Chain Sequence
ARIREVQGDITEFQGDAIVNAANNYLKLGAGVAGAILRKGGPSIQEECDRIGKIRVGEAAVTGAGNLPVRYVIHAAVLGDEPASLETVRKATKSALEKAVELGLKTVAFTALGAWVGGLPAEAVLRVMLEEIKKAPDTLEVTGVHGTEKSAEAARRALLEHHHHHH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags De novo protein
molecule keywords Serine hydrolase OSH55
publication title Design of activated serine-containing catalytic triads with atomic-level accuracy.
pubmed doi rcsb
total genus 56
structure length 166
sequence length 166
ec nomenclature
pdb deposition date 2011-12-14
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.40.220.10 Alpha Beta 3-Layer(aba) Sandwich Leucine Aminopeptidase, subunit E; domain 1 Leucine Aminopeptidase, subunit E, domain 1 3v45A00
4R7MA 2BFQA 4ABKA 1SPVA 4ZYQA 3GPGA 5CMSA 4ZI6A 4ZY0A 1NJRA 3SIGA 4K3NA 4D86A 3V45A 3H8FA 5FSZA 2AFCA 3EWPA 1ZR5A 3PEIA 4X2TA 3EWQA 5CB5A 3T8WA 3Q6ZA 2XD7A 3GPOA 3EW5A 3EKEA 3VFQA 2VRIA 1LAMA 5FSVA 3EJGA 1TXZA 4KSIA 4IQYA 2DX6A 1BLLE 4R6TA 1BPNA 4J5RA 3EWRA 2EEEA 4TU0A 1YD9A 2BFRA 5HOLA 3V2BA 3KZWA 1VHUA 3JRUA 2EWBA 4ESSA 3ETIA 1LAPA 5FSYA 2ACFA 4ZX9A 3IIDA 4ZY1A 3EWOA 5FSXA 4ZX8A 2J9AA 2FG1A 3KR4A 5CBMA 5CB3A 4ETJA 3KQZA 4JVVA 4ETKA 4GVVA 3IJ3A 2X47A 2L8RA 2LGRA 1LANA 4K0CA 2FAVA 3KQXA 3GPQA 3EJFA 4GUAA 4R76A 4UMLA 4ABLA 5AILA 3Q71A 3SIIA 3SIJA 5FSUA 4JGKA 3SIHA 1BPMA 3IIFA 1LCPA 1TY8A 2FXKA 4JCAA 4J5SA 5D8NA 4KYBA 1HJZA 5HIHA 3GQEA 1GYTA 1ZR3A 3KR5A 4J5QA 5E3BA 4J4ZA 3JZTA 4ZY2A 4JLLA 3H8EA 4GVWA 3GQOA 5DUSA 3H8GA
chains in the Genus database with same CATH superfamily
4R7MA 2BFQA 4ABKA 1SPVA 4ZYQA 3GPGA 5CMSA 4ZI6A 4ZY0A 1NJRA 3SIGA 4K3NA 4D86A 3V45A 3H8FA 5FSZA 2AFCA 3EWPA 1ZR5A 3PEIA 4X2TA 2RNKA 3EWQA 5CB5A 3T8WA 3Q6ZA 2XD7A 2WCTA 3GPOA 3EW5A 3EKEA 3VFQA 2VRIA 1LAMA 5FSVA 3EJGA 1TXZA 4KSIA 4IQYA 2DX6A 1BLLE 4R6TA 1BPNA 4J5RA 3EWRA 2EEEA 4TU0A 1YD9A 2BFRA 5HOLA 3V2BA 3KZWA 1VHUA 3JRUA 2EWBA 4ESSA 3ETIA 1LAPA 5FSYA 2ACFA 4ZX9A 3IIDA 4ZY1A 3EWOA 5FSXA 4ZX8A 2J9AA 2FG1A 3KR4A 5CBMA 2JZFA 5CB3A 4ETJA 3KQZA 4JVVA 4ETKA 4GVVA 3IJ3A 2X47A 2L8RA 2LGRA 1LANA 2W2GA 4K0CA 2FAVA 3KQXA 3GPQA 3EJFA 4GUAA 4R76A 4UMLA 4ABLA 5AILA 3Q71A 3SIIA 3SIJA 5FSUA 4JGKA 3SIHA 1BPMA 3IIFA 1LCPA 1TY8A 2FXKA 4JCAA 4J5SA 5D8NA 4KYBA 1HJZA 2KQVA 5HIHA 3GQEA 1GYTA 1ZR3A 2JZDA 3KR5A 4J5QA 5E3BA 4J4ZA 3JZTA 2JZEA 4ZY2A 4JLLA 3H8EA 4GVWA 3GQOA 5DUSA 3H8GA
chains in the Genus database with same CATH topology
4R7MA 2BFQA 4ABKA 1SPVA 4ZYQA 3GPGA 5CMSA 4ZI6A 4ZY0A 1NJRA 3SIGA 4K3NA 4D86A 3V45A 3H8FA 5FSZA 2AFCA 3EWPA 1ZR5A 3PEIA 4X2TA 3EWQA 5CB5A 3T8WA 3Q6ZA 2XD7A 3GPOA 3EW5A 3EKEA 3VFQA 2VRIA 1LAMA 5FSVA 3EJGA 1TXZA 4KSIA 4IQYA 2DX6A 1BLLE 4R6TA 1BPNA 4J5RA 3EWRA 2EEEA 4TU0A 1YD9A 2BFRA 5HOLA 3V2BA 3KZWA 1VHUA 3JRUA 2EWBA 4ESSA 3ETIA 1LAPA 5FSYA 2ACFA 4ZX9A 3IIDA 4ZY1A 3EWOA 5FSXA 4ZX8A 2J9AA 2FG1A 3KR4A 5CBMA 5CB3A 4ETJA 3KQZA 4JVVA 4ETKA 4GVVA 3IJ3A 2X47A 2L8RA 2LGRA 1LANA 4K0CA 2FAVA 3KQXA 3GPQA 3EJFA 4GUAA 4R76A 4UMLA 4ABLA 5AILA 3Q71A 3SIIA 3SIJA 5FSUA 4JGKA 3SIHA 1BPMA 3IIFA 1LCPA 1TY8A 2FXKA 4JCAA 4J5SA 5D8NA 4KYBA 1HJZA 5HIHA 3GQEA 1GYTA 1ZR3A 3KR5A 4J5QA 5E3BA 4J4ZA 3JZTA 4ZY2A 4JLLA 3H8EA 4GVWA 3GQOA 5DUSA 3H8GA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4R7M A;  2BFQ A;  4ABK A;  1SPV A;  4ZYQ A;  3GPG A;  5CMS A;  4ZI6 A;  4ZY0 A;  1NJR A;  3SIG A;  4K3N A;  4D86 A;  3V45 A;  3H8F A;  5FSZ A;  2AFC A;  3EWP A;  1ZR5 A;  3PEI A;  4X2T A;  3EWQ A;  5CB5 A;  3T8W A;  3Q6Z A;  2XD7 A;  3GPO A;  3EW5 A;  3EKE A;  3VFQ A;  2VRI A;  1LAM A;  5FSV A;  3EJG A;  1TXZ A;  4KSI A;  4IQY A;  2DX6 A;  1BLL E;  4R6T A;  1BPN A;  4J5R A;  3EWR A;  2EEE A;  4TU0 A;  1YD9 A;  2BFR A;  5HOL A;  3V2B A;  3KZW A;  1VHU A;  3JRU A;  2EWB A;  4ESS A;  3ETI A;  1LAP A;  5FSY A;  2ACF A;  4ZX9 A;  3IID A;  4ZY1 A;  3EWO A;  5FSX A;  4ZX8 A;  2J9A A;  2FG1 A;  3KR4 A;  5CBM A;  5CB3 A;  4ETJ A;  3KQZ A;  4JVV A;  4ETK A;  4GVV A;  3IJ3 A;  2X47 A;  2L8R A;  2LGR A;  1LAN A;  4K0C A;  2FAV A;  3KQX A;  3GPQ A;  3EJF A;  4GUA A;  4R76 A;  4UML A;  4ABL A;  5AIL A;  3Q71 A;  3SII A;  3SIJ A;  5FSU A;  4JGK A;  3SIH A;  1BPM A;  3IIF A;  1LCP A;  1TY8 A;  2FXK A;  4JCA A;  4J5S A;  5D8N A;  4KYB A;  1HJZ A;  5HIH A;  3GQE A;  1GYT A;  1ZR3 A;  3KR5 A;  4J5Q A;  5E3B A;  4J4Z A;  3JZT A;  4ZY2 A;  4JLL A;  3H8E A;  4GVW A;  3GQO A;  5DUS A;  3H8G A; 
#chains in the Genus database with same CATH topology
 4R7M A;  2BFQ A;  4ABK A;  1SPV A;  4ZYQ A;  3GPG A;  5CMS A;  4ZI6 A;  4ZY0 A;  1NJR A;  3SIG A;  4K3N A;  4D86 A;  3V45 A;  3H8F A;  5FSZ A;  2AFC A;  3EWP A;  1ZR5 A;  3PEI A;  4X2T A;  2RNK A;  3EWQ A;  5CB5 A;  3T8W A;  3Q6Z A;  2XD7 A;  2WCT A;  3GPO A;  3EW5 A;  3EKE A;  3VFQ A;  2VRI A;  1LAM A;  5FSV A;  3EJG A;  1TXZ A;  4KSI A;  4IQY A;  2DX6 A;  1BLL E;  4R6T A;  1BPN A;  4J5R A;  3EWR A;  2EEE A;  4TU0 A;  1YD9 A;  2BFR A;  5HOL A;  3V2B A;  3KZW A;  1VHU A;  3JRU A;  2EWB A;  4ESS A;  3ETI A;  1LAP A;  5FSY A;  2ACF A;  4ZX9 A;  3IID A;  4ZY1 A;  3EWO A;  5FSX A;  4ZX8 A;  2J9A A;  2FG1 A;  3KR4 A;  5CBM A;  2JZF A;  5CB3 A;  4ETJ A;  3KQZ A;  4JVV A;  4ETK A;  4GVV A;  3IJ3 A;  2X47 A;  2L8R A;  2LGR A;  1LAN A;  2W2G A;  4K0C A;  2FAV A;  3KQX A;  3GPQ A;  3EJF A;  4GUA A;  4R76 A;  4UML A;  4ABL A;  5AIL A;  3Q71 A;  3SII A;  3SIJ A;  5FSU A;  4JGK A;  3SIH A;  1BPM A;  3IIF A;  1LCP A;  1TY8 A;  2FXK A;  4JCA A;  4J5S A;  5D8N A;  4KYB A;  1HJZ A;  2KQV A;  5HIH A;  3GQE A;  1GYT A;  1ZR3 A;  2JZD A;  3KR5 A;  4J5Q A;  5E3B A;  4J4Z A;  3JZT A;  2JZE A;  4ZY2 A;  4JLL A;  3H8E A;  4GVW A;  3GQO A;  5DUS A;  3H8G A; 
#chains in the Genus database with same CATH homology
 4R7M A;  2BFQ A;  4ABK A;  1SPV A;  4ZYQ A;  3GPG A;  5CMS A;  4ZI6 A;  4ZY0 A;  1NJR A;  3SIG A;  4K3N A;  4D86 A;  3V45 A;  3H8F A;  5FSZ A;  2AFC A;  3EWP A;  1ZR5 A;  3PEI A;  4X2T A;  3EWQ A;  5CB5 A;  3T8W A;  3Q6Z A;  2XD7 A;  3GPO A;  3EW5 A;  3EKE A;  3VFQ A;  2VRI A;  1LAM A;  5FSV A;  3EJG A;  1TXZ A;  4KSI A;  4IQY A;  2DX6 A;  1BLL E;  4R6T A;  1BPN A;  4J5R A;  3EWR A;  2EEE A;  4TU0 A;  1YD9 A;  2BFR A;  5HOL A;  3V2B A;  3KZW A;  1VHU A;  3JRU A;  2EWB A;  4ESS A;  3ETI A;  1LAP A;  5FSY A;  2ACF A;  4ZX9 A;  3IID A;  4ZY1 A;  3EWO A;  5FSX A;  4ZX8 A;  2J9A A;  2FG1 A;  3KR4 A;  5CBM A;  5CB3 A;  4ETJ A;  3KQZ A;  4JVV A;  4ETK A;  4GVV A;  3IJ3 A;  2X47 A;  2L8R A;  2LGR A;  1LAN A;  4K0C A;  2FAV A;  3KQX A;  3GPQ A;  3EJF A;  4GUA A;  4R76 A;  4UML A;  4ABL A;  5AIL A;  3Q71 A;  3SII A;  3SIJ A;  5FSU A;  4JGK A;  3SIH A;  1BPM A;  3IIF A;  1LCP A;  1TY8 A;  2FXK A;  4JCA A;  4J5S A;  5D8N A;  4KYB A;  1HJZ A;  5HIH A;  3GQE A;  1GYT A;  1ZR3 A;  3KR5 A;  4J5Q A;  5E3B A;  4J4Z A;  3JZT A;  4ZY2 A;  4JLL A;  3H8E A;  4GVW A;  3GQO A;  5DUS A;  3H8G A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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