3V5VA

Unliganded e.cloacae c115d mura
Total Genus 128
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
128
sequence length
419
structure length
418
Chain Sequence
MDKFRVQGPTRLQGEVTISGAKNAALPILFAALLAEEPVEIQNVPKLKDIDTTMKLLTQLGTKVERGSVWIDASNVNNFSAPYDLVKTMRASIWALGPLVARFGQGQVSLPGGDAIGARPVDLHIFGLEKLGAEIKLEEGYVKASVNGRLKGAHIVMDKVSVGATVTIMSAATLAEGTTIIENAAREPEIVDTANFLVALGAKISGQGTDRITIEGVERLGGGVYRVLPDRIETGTFLVAAAISGGKIVCRNAQPDTLDAVLAKLREAGADIETGEDWISLDMHGKRPKAVTVRTAPHPAFPTDMQAQFTLLNLVAEGTGVITETIFENRFMHVPELIRMGAHAEIESNTVICHGVEKLSGAQVMATDLRASASLVLAGCIAEGTTVVDRIYHIDRGYERIEDKLRALGANIERVKGE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Functional Consequence of Covalent Reaction of Phosphoenolpyruvate with UDP-N-acetylglucosamine 1-Carboxyvinyltransferase (MurA).
pubmed doi rcsb
molecule tags Transferase
source organism Enterobacter cloacae
molecule keywords UDP-N-acetylglucosamine 1-carboxyvinyltransferase
total genus 128
structure length 418
sequence length 419
chains with identical sequence B, C, D
ec nomenclature ec 2.5.1.7: UDP-N-acetylglucosamine 1-carboxyvinyltransferase.
pdb deposition date 2011-12-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00275 EPSP_synthase EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3v5vA02
3.65.10.10 Alpha Beta Alpha-beta prism UDP-n-acetylglucosamine1-carboxyvinyl-transferase; Chain Enolpyruvate transferase domain 3v5vA01
1EYNA 3TI2A 2PQ9A 3ROIA 2QFSA 4E7BA 3KR6A 1RF6A 1MI4A 3SPBA 1RF4A 1YBGA 4E7CA 3V4TA 1EJCA 2GG4A 1UAEA 3TR1A 1Q36A 3SWQA 2O0DA 3SWGA 1DLGA 4EGRA 1P89A 4ZNDA 4R7UA 4E7DA 2QFUA 4N3PA 3SWIA 4E7GA 3SWDA 5U4HA 3FJZA 3RMTA 2GG6A 3SLHA 3FK0A 4GFPA 1RF5A 2O0XA 2RL2A 5BUFA 1P88A 3KQJA 3FJXA 2O15A 3SU9A 3KQAA 3R38A 3NVSA 3FK1A 4FQDA 4EIIA 3ZH3A 4E7EA 1Q3GA 2O0EA 2AA9A 1RYWA 2YVWA 1A2NA 3V5VA 2PQBA 2QFQA 3SWAA 2RL1A 4E7FA 3LTHA 1NAWA 2Z2CA 2BJBA 1EJDA 1X8TA 5BS5A 3ISSA 2PQDA 1G6SA 3VCYA 2GGDA 3SWEA 2AAYA 2O0ZA 3ZH4A 2GGAA 1G6TA 2PQCA 3UPKA 2O0BA 5BQ2A 3SG1A 2QFTA 1X8RA
chains in the Genus database with same CATH superfamily
1EYNA 3TI2A 2PQ9A 3ROIA 2QFSA 4E7BA 3KR6A 1RF6A 1MI4A 3SPBA 1RF4A 1YBGA 4E7CA 3V4TA 1EJCA 2GG4A 1UAEA 4O8JA 3TR1A 1Q36A 3SWQA 2O0DA 3SWGA 4CLQA 1DLGA 4EGRA 1P89A 4ZNDA 1QMHA 4R7UA 4E7DA 2QFUA 4N3PA 3SWIA 4E7GA 3SWDA 3TW3A 5U4HA 3FJZA 3PQVA 3TV1A 3TUTA 3RMTA 2GG6A 3SLHA 3FK0A 4GFPA 1RF5A 2O0XA 2RL2A 5BUFA 1P88A 3KQJA 3FJXA 2O15A 3SU9A 3KQAA 3R38A 3NVSA 4O89A 3FK1A 4FQDA 4EIIA 3ZH3A 4E7EA 3TUXA 1Q3GA 2O0EA 2AA9A 1RYWA 2YVWA 1A2NA 3V5VA 2PQBA 2QFQA 3SWAA 2RL1A 4E7FA 3LTHA 1NAWA 2Z2CA 2BJBA 1EJDA 1QMIA 1X8TA 5BS5A 3ISSA 2PQDA 3KGDA 1G6SA 3VCYA 2GGDA 3SWEA 2AAYA 2O0ZA 3ZH4A 2GGAA 1G6TA 2PQCA 3UPKA 2O0BA 5BQ2A 3SG1A 2QFTA 1X8RA
chains in the Genus database with same CATH topology
1EYNA 3TI2A 2PQ9A 3ROIA 2QFSA 4E7BA 3KR6A 1RF6A 1MI4A 3SPBA 1RF4A 1YBGA 4E7CA 3V4TA 1EJCA 2GG4A 1UAEA 3TR1A 1Q36A 3SWQA 2O0DA 3SWGA 1DLGA 4EGRA 1P89A 4ZNDA 4R7UA 4E7DA 2QFUA 4N3PA 3SWIA 4E7GA 3SWDA 5U4HA 3FJZA 3RMTA 2GG6A 3SLHA 3FK0A 4GFPA 1RF5A 2O0XA 2RL2A 5BUFA 1P88A 3KQJA 3FJXA 2O15A 3SU9A 3KQAA 3R38A 3NVSA 3FK1A 4FQDA 4EIIA 3ZH3A 4E7EA 1Q3GA 2O0EA 2AA9A 1RYWA 2YVWA 1A2NA 3V5VA 2PQBA 2QFQA 3SWAA 2RL1A 4E7FA 3LTHA 1NAWA 2Z2CA 2BJBA 1EJDA 1X8TA 5BS5A 3ISSA 2PQDA 1G6SA 3VCYA 2GGDA 3SWEA 2AAYA 2O0ZA 3ZH4A 2GGAA 1G6TA 2PQCA 3UPKA 2O0BA 5BQ2A 3SG1A 2QFTA 1X8RA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1EYN A;  3TI2 A;  2PQ9 A;  3ROI A;  2QFS A;  4E7B A;  3KR6 A;  1RF6 A;  1MI4 A;  3SPB A;  1RF4 A;  1YBG A;  4E7C A;  3V4T A;  1EJC A;  2GG4 A;  1UAE A;  3TR1 A;  1Q36 A;  3SWQ A;  2O0D A;  3SWG A;  1DLG A;  4EGR A;  1P89 A;  4ZND A;  4R7U A;  4E7D A;  2QFU A;  4N3P A;  3SWI A;  4E7G A;  3SWD A;  5U4H A;  3FJZ A;  3RMT A;  2GG6 A;  3SLH A;  3FK0 A;  4GFP A;  1RF5 A;  2O0X A;  2RL2 A;  5BUF A;  1P88 A;  3KQJ A;  3FJX A;  2O15 A;  3SU9 A;  3KQA A;  3R38 A;  3NVS A;  3FK1 A;  4FQD A;  4EII A;  3ZH3 A;  4E7E A;  1Q3G A;  2O0E A;  2AA9 A;  1RYW A;  2YVW A;  1A2N A;  3V5V A;  2PQB A;  2QFQ A;  3SWA A;  2RL1 A;  4E7F A;  3LTH A;  1NAW A;  2Z2C A;  2BJB A;  1EJD A;  1X8T A;  5BS5 A;  3ISS A;  2PQD A;  1G6S A;  3VCY A;  2GGD A;  3SWE A;  2AAY A;  2O0Z A;  3ZH4 A;  2GGA A;  1G6T A;  2PQC A;  3UPK A;  2O0B A;  5BQ2 A;  3SG1 A;  2QFT A;  1X8R A; 
#chains in the Genus database with same CATH topology
 1EYN A;  3TI2 A;  2PQ9 A;  3ROI A;  2QFS A;  4E7B A;  3KR6 A;  1RF6 A;  1MI4 A;  3SPB A;  1RF4 A;  1YBG A;  4E7C A;  3V4T A;  1EJC A;  2GG4 A;  1UAE A;  4O8J A;  3TR1 A;  1Q36 A;  3SWQ A;  2O0D A;  3SWG A;  4CLQ A;  1DLG A;  4EGR A;  1P89 A;  4ZND A;  1QMH A;  4R7U A;  4E7D A;  2QFU A;  4N3P A;  3SWI A;  4E7G A;  3SWD A;  3TW3 A;  5U4H A;  3FJZ A;  3PQV A;  3TV1 A;  3TUT A;  3RMT A;  2GG6 A;  3SLH A;  3FK0 A;  4GFP A;  1RF5 A;  2O0X A;  2RL2 A;  5BUF A;  1P88 A;  3KQJ A;  3FJX A;  2O15 A;  3SU9 A;  3KQA A;  3R38 A;  3NVS A;  4O89 A;  3FK1 A;  4FQD A;  4EII A;  3ZH3 A;  4E7E A;  3TUX A;  1Q3G A;  2O0E A;  2AA9 A;  1RYW A;  2YVW A;  1A2N A;  3V5V A;  2PQB A;  2QFQ A;  3SWA A;  2RL1 A;  4E7F A;  3LTH A;  1NAW A;  2Z2C A;  2BJB A;  1EJD A;  1QMI A;  1X8T A;  5BS5 A;  3ISS A;  2PQD A;  3KGD A;  1G6S A;  3VCY A;  2GGD A;  3SWE A;  2AAY A;  2O0Z A;  3ZH4 A;  2GGA A;  1G6T A;  2PQC A;  3UPK A;  2O0B A;  5BQ2 A;  3SG1 A;  2QFT A;  1X8R A; 
#chains in the Genus database with same CATH homology
 1EYN A;  3TI2 A;  2PQ9 A;  3ROI A;  2QFS A;  4E7B A;  3KR6 A;  1RF6 A;  1MI4 A;  3SPB A;  1RF4 A;  1YBG A;  4E7C A;  3V4T A;  1EJC A;  2GG4 A;  1UAE A;  3TR1 A;  1Q36 A;  3SWQ A;  2O0D A;  3SWG A;  1DLG A;  4EGR A;  1P89 A;  4ZND A;  4R7U A;  4E7D A;  2QFU A;  4N3P A;  3SWI A;  4E7G A;  3SWD A;  5U4H A;  3FJZ A;  3RMT A;  2GG6 A;  3SLH A;  3FK0 A;  4GFP A;  1RF5 A;  2O0X A;  2RL2 A;  5BUF A;  1P88 A;  3KQJ A;  3FJX A;  2O15 A;  3SU9 A;  3KQA A;  3R38 A;  3NVS A;  3FK1 A;  4FQD A;  4EII A;  3ZH3 A;  4E7E A;  1Q3G A;  2O0E A;  2AA9 A;  1RYW A;  2YVW A;  1A2N A;  3V5V A;  2PQB A;  2QFQ A;  3SWA A;  2RL1 A;  4E7F A;  3LTH A;  1NAW A;  2Z2C A;  2BJB A;  1EJD A;  1X8T A;  5BS5 A;  3ISS A;  2PQD A;  1G6S A;  3VCY A;  2GGD A;  3SWE A;  2AAY A;  2O0Z A;  3ZH4 A;  2GGA A;  1G6T A;  2PQC A;  3UPK A;  2O0B A;  5BQ2 A;  3SG1 A;  2QFT A;  1X8R A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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