3V89A

The crystal structure of transferrin binding protein a (tbpa) from neisseria meningitidis serogroup b in complex with the c-lobe of human transferrin
Total Genus 198
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
198
sequence length
865
structure length
853
Chain Sequence
RDNEVTGLGKLVKSSDTLSKEQVLNIRDLTRYDPGIAVVEQGRGASSGYSIRGMDKNRVSLTVDGVSQIQSYTAQAALGGTRTAGSSGAINEIEYENVKAVEISKGSNSVEQGSGALAGSVAFQTKTADDVIGEGRQWGIQSKTAYSGKNRGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDSSNYAYFIVKEECKNGSYETCKANPKKDVVGKDERQTVSTRDYTGPNRFLADPLSYESRSWLFRPGFRFENKRHYIGGILEHTQQTFDTRDMTVPAFLTKAVFDANKKQAGSLPGNGKYAGNHKYGGLFTNGENGALVGAEYGTGVFYDETHTKSRYGLEYVYTNADKDTWADYARLSYDRQGVGLDNHFQQTHCSADGSDKYCRPSADKPFSYYKSDRVIYGESHRLLQAAFKKSFDRHNLSVNLGFDRFGSNLRHQDYYYQHANRAYSSNTPPQNNGKKISPNGSETSPYWVTIGRGNVVTGQICRLGNNTYTDCTPRSINGKSYYAAVRDNVRLGRWADVGAGLRYDYRSTHSDDGSVSTGTHRTLSWNAGIVLKPTDWLDLTYRTSTGFRLPSFAEMYGWRAGVQSKAVKIDPEKSFNKEAGIVFKGDFGNLEASWFNNAYRDLIVRGYEAQIKDGKEEAKGDPAYLNAQSARITGINILGKIDWNGWYSTFAYNRVRVRDIKKRADRTDIQSHLFDAIQPSRYVVGLGYDQPEGKWGVNGMLTYSKAKEITELLGSRALLNGNSRNTKATARRTRPWYIVDVSGYYTVKKHFTLRAGVYNLLNYRYVTWENVRQTAGGAVNQHKNVGVYNRYAAPGRNYTFSLEMKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein/metal transport
molecule keywords Transferrin-binding protein A
publication title Structural basis for iron piracy by pathogenic Neisseria.
pubmed doi rcsb
source organism Neisseria meningitidis serogroup b
total genus 198
structure length 853
sequence length 865
ec nomenclature
pdb deposition date 2011-12-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 3v89A02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 3v89A01
1FI1A 1FCPA 1XKHA 3CSLA 2W76A 4RDRA 3QLBA 3V89A 1PNZA 2FCPA 1PO0A 1XKWA 1QFFA 3EFMA 3M8DA 1QFGA 1NQGA 1KMOA 2GSKA 4B7OA 1NQHA 3RGNA 4AIPA 3FHHA 1QJQA 1PO3A 4EPAA 2GRXA 4AIQA 1NQFA 2IAHA 1BY5A 2W6TA 2W75A 1NQEA 1KMPA 1BY3A 2W78A 3CSNA 2W6UA 3DDRA 1UJWA 3V8XA 3M8BA 3RGMA 2O5PA 2W16A 2W77A 2HDFA 2HDIA 2YSUA 5FOKA 2GUFA 4CU4A 1QKCA 4RDTA 1FEPA
chains in the Genus database with same CATH superfamily
1FI1A 1MPRA 1FCPA 1MALA 1MPNA 1XKHA 3CSLA 2W76A 4RDRA 3QLBA 3V89A 1OH2P 1PNZA 2FCPA 1PO0A 1MPQA 1QFFA 1XKWA 3EFMA 3M8DA 1QFGA 1A0SP 1NQGA 1KMOA 2GSKA 1MPOA 4B7OA 1NQHA 3RGNA 4AIPA 2MPRA 3FHHA 1QJQA 1PO3A 4EPAA 2GRXA 4AIQA 1NQFA 2IAHA 1AF6A 1OH2Q 1BY5A 2W6TA 2W75A 1NQEA 1KMPA 1BY3A 2W78A 3CSNA 2W6UA 3DDRA 1MPMA 1JBIA 1UJWA 3V8XA 3M8BA 3RGMA 2O5PA 2W16A 2W77A 1A0TP 2HDFA 2HDIA 2YSUA 5FOKA 2GUFA 4CU4A 1QKCA 4RDTA 1FEPA
chains in the Genus database with same CATH topology
1FI1A 1FCPA 1XKHA 3CSLA 2W76A 4RDRA 3QLBA 3V89A 1PNZA 2FCPA 1PO0A 1XKWA 1QFFA 3EFMA 3M8DA 1QFGA 1NQGA 1KMOA 2GSKA 4B7OA 1NQHA 3RGNA 4AIPA 3FHHA 1QJQA 1PO3A 4EPAA 2GRXA 4AIQA 1NQFA 2IAHA 1BY5A 2W6TA 2W75A 1NQEA 1KMPA 1BY3A 2W78A 3CSNA 2W6UA 3DDRA 1UJWA 3V8XA 3M8BA 3RGMA 2O5PA 2W16A 2W77A 2HDFA 2HDIA 2YSUA 5FOKA 2GUFA 4CU4A 1QKCA 4RDTA 1FEPA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1FI1 A;  1FCP A;  1XKH A;  3CSL A;  2W76 A;  4RDR A;  3QLB A;  3V89 A;  1PNZ A;  2FCP A;  1PO0 A;  1XKW A;  1QFF A;  3EFM A;  3M8D A;  1QFG A;  1NQG A;  1KMO A;  2GSK A;  4B7O A;  1NQH A;  3RGN A;  4AIP A;  3FHH A;  1QJQ A;  1PO3 A;  4EPA A;  2GRX A;  4AIQ A;  1NQF A;  2IAH A;  1BY5 A;  2W6T A;  2W75 A;  1NQE A;  1KMP A;  1BY3 A;  2W78 A;  3CSN A;  2W6U A;  3DDR A;  1UJW A;  3V8X A;  3M8B A;  3RGM A;  2O5P A;  2W16 A;  2W77 A;  2HDF A;  2HDI A;  2YSU A;  5FOK A;  2GUF A;  4CU4 A;  1QKC A;  4RDT A;  1FEP A; 
#chains in the Genus database with same CATH topology
 1FI1 A;  1MPR A;  1FCP A;  1MAL A;  1MPN A;  1XKH A;  3CSL A;  2W76 A;  4RDR A;  3QLB A;  3V89 A;  1OH2 P;  1PNZ A;  2FCP A;  1PO0 A;  1MPQ A;  1QFF A;  1XKW A;  3EFM A;  3M8D A;  1QFG A;  1A0S P;  1NQG A;  1KMO A;  2GSK A;  1MPO A;  4B7O A;  1NQH A;  3RGN A;  4AIP A;  2MPR A;  3FHH A;  1QJQ A;  1PO3 A;  4EPA A;  2GRX A;  4AIQ A;  1NQF A;  2IAH A;  1AF6 A;  1OH2 Q;  1BY5 A;  2W6T A;  2W75 A;  1NQE A;  1KMP A;  1BY3 A;  2W78 A;  3CSN A;  2W6U A;  3DDR A;  1MPM A;  1JBI A;  1UJW A;  3V8X A;  3M8B A;  3RGM A;  2O5P A;  2W16 A;  2W77 A;  1A0T P;  2HDF A;  2HDI A;  2YSU A;  5FOK A;  2GUF A;  4CU4 A;  1QKC A;  4RDT A;  1FEP A; 
#chains in the Genus database with same CATH homology
 1FI1 A;  1FCP A;  1XKH A;  3CSL A;  2W76 A;  4RDR A;  3QLB A;  3V89 A;  1PNZ A;  2FCP A;  1PO0 A;  1XKW A;  1QFF A;  3EFM A;  3M8D A;  1QFG A;  1NQG A;  1KMO A;  2GSK A;  4B7O A;  1NQH A;  3RGN A;  4AIP A;  3FHH A;  1QJQ A;  1PO3 A;  4EPA A;  2GRX A;  4AIQ A;  1NQF A;  2IAH A;  1BY5 A;  2W6T A;  2W75 A;  1NQE A;  1KMP A;  1BY3 A;  2W78 A;  3CSN A;  2W6U A;  3DDR A;  1UJW A;  3V8X A;  3M8B A;  3RGM A;  2O5P A;  2W16 A;  2W77 A;  2HDF A;  2HDI A;  2YSU A;  5FOK A;  2GUF A;  4CU4 A;  1QKC A;  4RDT A;  1FEP A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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