3V8XA

The crystal structure of transferrin binding protein a (tbpa) from neisserial meningitidis serogroup b in complex with full length human transferrin
Total Genus 225
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
225
sequence length
862
structure length
853
Chain Sequence
EVTGLGKLVKSSDTLSKEQVLNIRDLTRYDPGIAVVEQGRGASSGYSIRGMDKNRVSLTVDGVSQIQSYTAQAALGGTRTAGSSGAINEIEYENVKAVEISKGSNSVEQGSGALAGSVAFQTKTADDVIGEGRQWGIQSKTAYSGKNRGLTQSIALAGRIGGAEALLIHTGRRAGEIRAHEDAGRGVQSFNRLVPVEDSSNYAYFIVKEECKNGSYETCKANPKKDVVGKDERQTVSTRDYTGPNRFLADPLSYESRSWLFRPGFRFENKRHYIGGILEHTQQTFDTRDMTVPAFLTKAVFDANKKQAGSLPGNGKYAGNHKYGGLFTNGENGALVGAEYGTGVFYDETHTKSRYGLEYVYTNADKDTWADYARLSYDRQGVGLDNHFQQTHCSADGSDKYCRPSADKPFSYYKSDRVIYGESHRLLQAAFKKSFDKIRHNLSVNLGFDRFGSNLRHQDYYYQHANRAYSSNTPPQNNGKKISPNGSETSPYWVTIGRGNVVTGQICRLGNNTYTDCTPRSINGKSYYAAVRDNVRLGRWADVGAGLRYDYRSTHSDDGSVSTGTHRTLSWNAGIVLKPTDWLDLTYRTSTGFRLPSFAEMYGWRAGVQSKAVKIDPEKSFNKEAGIVFKGDFGNLEASWFNNAYRDLIVRGYEAQIKDGKEEAKGDPAYLNAQSARITGINILGKIDWNGVWYSTFAYNRVRVRDIKKRADRTDIQSHLFDAIQPSRYVVGLGYDQPEGKWGVNGMLTYSKAKEITELLGSRALLNGNSRNTKATARRTRPWYIVDVSGYYTVKKHFTLRAGVYNLLNYRYVTWENVRQTAGGAVNQHKNVGVYNRYAAPGRNYTFSLEYKF
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Membrane protein/metal transport
molecule keywords Transferrin-binding protein 1
publication title Structural basis for iron piracy by pathogenic Neisseria.
pubmed doi rcsb
source organism Neisseria meningitidis serogroup b
total genus 225
structure length 853
sequence length 862
ec nomenclature
pdb deposition date 2011-12-23

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00593 TonB_dep_Rec TonB dependent receptor
A PF07715 Plug TonB-dependent Receptor Plug Domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.40.170.20 Mainly Beta Beta Barrel Maltoporin; Chain A TonB-dependent receptor, beta-barrel domain 3v8xA02
2.170.130.10 Mainly Beta Beta Complex Ferric Hydroxamate Uptake Protein; Chain A, domain 1 TonB-dependent receptor, plug domain 3v8xA01
1QFGA 4RDTA 1NQFA 1XKWA 1FI1A 1UJWA 2GSKA 2W78A 1FEPA 2W16A 1PO0A 4AIPA 3EFMA 5FOKA 3RGNA 1NQHA 3CSNA 3M8BA 1QJQA 2FCPA 4CU4A 1QKCA 2O5PA 2GUFA 2W6TA 1QFFA 2YSUA 4B7OA 1NQEA 3M8DA 1PNZA 2W75A 3RGMA 2W77A 1BY5A 4EPAA 4RDRA 1PO3A 1BY3A 3FHHA 2HDIA 3V8XA 4AIQA 1XKHA 2GRXA 3CSLA 1FCPA 2W6UA 3DDRA 1KMPA 2HDFA 3QLBA 2W76A 1KMOA 3V89A 2IAHA 1NQGA
chains in the Genus database with same CATH superfamily
1QFGA 4RDTA 1NQFA 1XKWA 1FI1A 1MALA 2GSKA 2MPRA 1UJWA 1A0SP 2W78A 1FEPA 2W16A 1PO0A 4AIPA 3EFMA 5FOKA 3RGNA 1NQHA 3CSNA 3M8BA 1QJQA 2FCPA 4CU4A 1QKCA 2O5PA 1A0TP 2GUFA 1QFFA 1AF6A 2YSUA 4B7OA 2W6TA 1NQEA 1OH2Q 3M8DA 1MPMA 1PNZA 2W75A 3RGMA 2W77A 1BY5A 1MPQA 4EPAA 4RDRA 1PO3A 1BY3A 3FHHA 2HDIA 3V8XA 4AIQA 1XKHA 2GRXA 3CSLA 1FCPA 2W6UA 1MPOA 1OH2P 3DDRA 1MPRA 1KMPA 2HDFA 3QLBA 2W76A 1MPNA 1KMOA 3V89A 2IAHA 1JBIA 1NQGA
chains in the Genus database with same CATH topology
1QFGA 4RDTA 1NQFA 1XKWA 1FI1A 1UJWA 2GSKA 2W78A 1FEPA 2W16A 1PO0A 4AIPA 3EFMA 5FOKA 3RGNA 1NQHA 3CSNA 3M8BA 1QJQA 2FCPA 4CU4A 1QKCA 2O5PA 2GUFA 2W6TA 1QFFA 2YSUA 4B7OA 1NQEA 3M8DA 1PNZA 2W75A 3RGMA 2W77A 1BY5A 4EPAA 4RDRA 1PO3A 1BY3A 3FHHA 2HDIA 3V8XA 4AIQA 1XKHA 2GRXA 3CSLA 1FCPA 2W6UA 3DDRA 1KMPA 2HDFA 3QLBA 2W76A 1KMOA 3V89A 2IAHA 1NQGA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1QFG A;  4RDT A;  1NQF A;  1XKW A;  1FI1 A;  1UJW A;  2GSK A;  2W78 A;  1FEP A;  2W16 A;  1PO0 A;  4AIP A;  3EFM A;  5FOK A;  3RGN A;  1NQH A;  3CSN A;  3M8B A;  1QJQ A;  2FCP A;  4CU4 A;  1QKC A;  2O5P A;  2GUF A;  2W6T A;  1QFF A;  2YSU A;  4B7O A;  1NQE A;  3M8D A;  1PNZ A;  2W75 A;  3RGM A;  2W77 A;  1BY5 A;  4EPA A;  4RDR A;  1PO3 A;  1BY3 A;  3FHH A;  2HDI A;  3V8X A;  4AIQ A;  1XKH A;  2GRX A;  3CSL A;  1FCP A;  2W6U A;  3DDR A;  1KMP A;  2HDF A;  3QLB A;  2W76 A;  1KMO A;  3V89 A;  2IAH A;  1NQG A; 
#chains in the Genus database with same CATH topology
 1QFG A;  4RDT A;  1NQF A;  1XKW A;  1FI1 A;  1MAL A;  2GSK A;  2MPR A;  1UJW A;  1A0S P;  2W78 A;  1FEP A;  2W16 A;  1PO0 A;  4AIP A;  3EFM A;  5FOK A;  3RGN A;  1NQH A;  3CSN A;  3M8B A;  1QJQ A;  2FCP A;  4CU4 A;  1QKC A;  2O5P A;  1A0T P;  2GUF A;  1QFF A;  1AF6 A;  2YSU A;  4B7O A;  2W6T A;  1NQE A;  1OH2 Q;  3M8D A;  1MPM A;  1PNZ A;  2W75 A;  3RGM A;  2W77 A;  1BY5 A;  1MPQ A;  4EPA A;  4RDR A;  1PO3 A;  1BY3 A;  3FHH A;  2HDI A;  3V8X A;  4AIQ A;  1XKH A;  2GRX A;  3CSL A;  1FCP A;  2W6U A;  1MPO A;  1OH2 P;  3DDR A;  1MPR A;  1KMP A;  2HDF A;  3QLB A;  2W76 A;  1MPN A;  1KMO A;  3V89 A;  2IAH A;  1JBI A;  1NQG A; 
#chains in the Genus database with same CATH homology
 1QFG A;  4RDT A;  1NQF A;  1XKW A;  1FI1 A;  1UJW A;  2GSK A;  2W78 A;  1FEP A;  2W16 A;  1PO0 A;  4AIP A;  3EFM A;  5FOK A;  3RGN A;  1NQH A;  3CSN A;  3M8B A;  1QJQ A;  2FCP A;  4CU4 A;  1QKC A;  2O5P A;  2GUF A;  2W6T A;  1QFF A;  2YSU A;  4B7O A;  1NQE A;  3M8D A;  1PNZ A;  2W75 A;  3RGM A;  2W77 A;  1BY5 A;  4EPA A;  4RDR A;  1PO3 A;  1BY3 A;  3FHH A;  2HDI A;  3V8X A;  4AIQ A;  1XKH A;  2GRX A;  3CSL A;  1FCP A;  2W6U A;  3DDR A;  1KMP A;  2HDF A;  3QLB A;  2W76 A;  1KMO A;  3V89 A;  2IAH A;  1NQG A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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