The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
141
|
sequence length |
773
|
structure length |
736
|
Chain Sequence |
PYLIQRLGIEQGLSNNYVLSITQDKQGFLWFATEEGLNKFDGTRFITYYKEEQSSSVQSITGNELNEVYTDPVQPVIWIATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKGLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWTATEAEDGKLYIGHVEGGLSILSLNDKSVKHFVHPGNDVRCIYKDTNGNIWIGTSKGLALFNANTETFTNLSSYIFSIKQLKDNKLWIATELNGIMILDLQQNFEFIREGDNNYSLSNASARYIFQDSFNNIWIGTWGGGINFISNAPPTFHTWSQMNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNLLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWIGTHAGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQVFQRKEGLPNTHIRAISEDKNGNIWASTNTGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKDHNGLIYFGSINGLCFFNPDIAINSPQIPPVVITKVRIPGRLTSREKNETAIPISEGEIELTHEQNSFNLTFNVQDYSLANQVEYAYMLKGLENSWYTINEQNSVTFRNIPPGKYEFLVKARLHNQDWSEDTTSLRIHINP
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
Crystal structures of apparent saccharide sensors from histidine kinase receptors prevalent in a human gut symbiont.
pubmed doi rcsb |
| molecule tags |
Transcription
|
| source organism |
Bacteroides thetaiotaomicron
|
| molecule keywords |
Two-component system sensor histidine kinase/response regula
|
| total genus |
141
|
| structure length |
736
|
| sequence length |
773
|
| chains with identical sequence |
B, C, D
|
| ec nomenclature | |
| pdb deposition date | 2011-12-27 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF07494 | Reg_prop | Two component regulator propeller |
| A | PF07495 | Y_Y_Y | Y_Y_Y domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | ||
| Mainly Beta | 7 Propeller | Methylamine Dehydrogenase; Chain H | YVTN repeat-like/Quinoprotein amine dehydrogenase | ||
| Mainly Beta | 7 Propeller | Methylamine Dehydrogenase; Chain H | YVTN repeat-like/Quinoprotein amine dehydrogenase |
