3VA9A

Crystal structure of the rhodopseudomonas palustris histidine kinase hk9 sensor domain
Total Genus 59
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
59
sequence length
127
structure length
127
Chain Sequence
TNKALLAISAIQQAVLEAETSERGFLLTGIETYRDSYIRARDALAARLDGLRAVLADNPEQIAHIDELRLLTDMRMAQLGRVVELGPERMREALDILEQARVDRLTERIETSLSVLTRAEQALLIQR
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Transferase
molecule keywords Sensor histidine kinase
publication title Crystal structure of the Rhodopseudomonas palustris histidine kinase HK9 sensor domain
rcsb
source organism Rhodopseudomonas palustris
total genus 59
structure length 127
sequence length 127
ec nomenclature ec 2.7.13.3: Histidine kinase.
pdb deposition date 2011-12-29

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF05227 CHASE3 CHASE3 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.1440.210 Mainly Alpha Up-down Bundle de novo design (two linked rop proteins) de novo design (two linked rop proteins) 3va9A00
3VA9A 2YFBA 2YFAA
chains in the Genus database with same CATH superfamily
4JCVE 2L1LB 2YFBA 2P22B 4PL4A 3UITA 4AS3A 3FNBA 3SDJA 2MJFB 3B55A 3I9V1 4YZ9A 2QGMA 4Q9VA 3KP9A 1TDPA 3AJFA 2FUG1 4DWLA 3FVVA 2CAZB 2KKMA 3DO9A 2ZRRA 4I1TA 2HGKA 4OAUC 4Z7GA 2BL8A 2RADA 2FU2A 5LNK1 3DA4A 3IAS1 5HGIA 3JSBA 4O1OA 4AS2A 2GSCA 3Q8DA 4YZCA 3VA9A 1W3SA 4G76A 2JAEA 1YO7A 4NV5A 4YZDA 2F66B 2YFAA 2RLDA 4HFVA 2XTRA 3F4MA 1U5KA 3L0IA 4G75A 2XMXA 2QZGA 2ETDA 2F6MB 3FBVA 2A2DA 4PL3A 4U6RA 2IP6A 4O1PA 4Z7HA 4PL5A 3IAM1 2JB3A 2JBWA 4HEA1 3LJ0A 3P23A 2BL7A 2E8GA 2V1CC 2A2CA 3LJ1A 4NV2A 2XTQA 4OAVB 2QSBA 2ZW3A 2V6EA 3LJ2A 2K19A 2JB2A 1SJ8A 4GXTA 2RIOA 2FEFA 1JQOA 3DA3A 2JB1A
chains in the Genus database with same CATH topology
4JCVE 2L1LB 2YFBA 2P22B 4PL4A 3UITA 4AS3A 3SDJA 2MJFB 3I9V1 4YZ9A 4Q9VA 3KP9A 3AJFA 2FUG1 4DWLA 2CAZB 2KKMA 3DO9A 2ZRRA 4I1TA 4OAUC 4Z7GA 5LNK1 3DA4A 3IAS1 5HGIA 3JSBA 4O1OA 4AS2A 3Q8DA 4YZCA 3VA9A 1W3SA 4G76A 2JAEA 1YO7A 4NV5A 4YZDA 2F66B 2YFAA 4HFVA 2XTRA 3F4MA 1U5KA 3L0IA 4G75A 2XMXA 2F6MB 3FBVA 2A2DA 4PL3A 4U6RA 2IP6A 4O1PA 4Z7HA 4PL5A 3IAM1 2JB3A 4HEA1 3LJ0A 3P23A 2E8GA 2V1CC 2A2CA 3LJ1A 4NV2A 2XTQA 4OAVB 2V6EA 3LJ2A 2K19A 2JB2A 1SJ8A 4GXTA 2RIOA 3DA3A 2JB1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3VA9 A;  2YFB A;  2YFA A; 
#chains in the Genus database with same CATH topology
 4JCV E;  2L1L B;  2YFB A;  2P22 B;  4PL4 A;  3UIT A;  4AS3 A;  3FNB A;  3SDJ A;  2MJF B;  3B55 A;  3I9V 1;  4YZ9 A;  2QGM A;  4Q9V A;  3KP9 A;  1TDP A;  3AJF A;  2FUG 1;  4DWL A;  3FVV A;  2CAZ B;  2KKM A;  3DO9 A;  2ZRR A;  4I1T A;  2HGK A;  4OAU C;  4Z7G A;  2BL8 A;  2RAD A;  2FU2 A;  5LNK 1;  3DA4 A;  3IAS 1;  5HGI A;  3JSB A;  4O1O A;  4AS2 A;  2GSC A;  3Q8D A;  4YZC A;  3VA9 A;  1W3S A;  4G76 A;  2JAE A;  1YO7 A;  4NV5 A;  4YZD A;  2F66 B;  2YFA A;  2RLD A;  4HFV A;  2XTR A;  3F4M A;  1U5K A;  3L0I A;  4G75 A;  2XMX A;  2QZG A;  2ETD A;  2F6M B;  3FBV A;  2A2D A;  4PL3 A;  4U6R A;  2IP6 A;  4O1P A;  4Z7H A;  4PL5 A;  3IAM 1;  2JB3 A;  2JBW A;  4HEA 1;  3LJ0 A;  3P23 A;  2BL7 A;  2E8G A;  2V1C C;  2A2C A;  3LJ1 A;  4NV2 A;  2XTQ A;  4OAV B;  2QSB A;  2ZW3 A;  2V6E A;  3LJ2 A;  2K19 A;  2JB2 A;  1SJ8 A;  4GXT A;  2RIO A;  2FEF A;  1JQO A;  3DA3 A;  2JB1 A; 
#chains in the Genus database with same CATH homology
 4JCV E;  2L1L B;  2YFB A;  2P22 B;  4PL4 A;  3UIT A;  4AS3 A;  3SDJ A;  2MJF B;  3I9V 1;  4YZ9 A;  4Q9V A;  3KP9 A;  3AJF A;  2FUG 1;  4DWL A;  2CAZ B;  2KKM A;  3DO9 A;  2ZRR A;  4I1T A;  4OAU C;  4Z7G A;  5LNK 1;  3DA4 A;  3IAS 1;  5HGI A;  3JSB A;  4O1O A;  4AS2 A;  3Q8D A;  4YZC A;  3VA9 A;  1W3S A;  4G76 A;  2JAE A;  1YO7 A;  4NV5 A;  4YZD A;  2F66 B;  2YFA A;  4HFV A;  2XTR A;  3F4M A;  1U5K A;  3L0I A;  4G75 A;  2XMX A;  2F6M B;  3FBV A;  2A2D A;  4PL3 A;  4U6R A;  2IP6 A;  4O1P A;  4Z7H A;  4PL5 A;  3IAM 1;  2JB3 A;  4HEA 1;  3LJ0 A;  3P23 A;  2E8G A;  2V1C C;  2A2C A;  3LJ1 A;  4NV2 A;  2XTQ A;  4OAV B;  2V6E A;  3LJ2 A;  2K19 A;  2JB2 A;  1SJ8 A;  4GXT A;  2RIO A;  3DA3 A;  2JB1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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