3VCFA

Ssv1 integrase c-terminal catalytic domain (174-335aa)
Total Genus 53
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
53
sequence length
160
structure length
160
Chain Sequence
IYIPTLEEIKRTLQLAKDYSENVYFIYRIALESGVRLSEILKVLKEPERDICGNDVCYYPLSWTRGYKGVFYVFHITPLKRVEVTKWAIADFERRHKDAIAIKYFRKFVASKMAELSVPLDIIDFIQGRKPTRVLTQHYVSLFGIAKEQYKKYAEWLKGV
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Recombination
molecule keywords Probable integrase
publication title Structural and functional characterization of the C-terminal catalytic domain of SSV1 integrase
doi rcsb
source organism Sulfolobus virus 1
total genus 53
structure length 160
sequence length 160
chains with identical sequence B
ec nomenclature
pdb deposition date 2012-01-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF16795 Phage_integr_3 Archaeal phage integrase
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.10.443.10 Mainly Alpha Orthogonal Bundle hpI Integrase; Chain A Intergrase catalytic core 3vcfA00
1CRXA 3C28A 1P7DA 1PVPA 5C6KA 4CRXA 1P4EC 1PVQA 1M6XC 1AE9A 1A0PA 1PVRA 1KBUA 1Z19A 4DKSA 5DCFA 3CRXA 1Q3UA 1XO0A 1OUQA 1NZBA 1P4EA 3VCFA 5CRXA 1AIHA 1MA7A 1FLOA 2HOIA 1Q3VA 3NKHA 1Z1BA 1M6XA 5DORA 1XNSA 3MGVA 2A3VA 1DRGA 3C29A 2CRXA 4A8EA 1F44A 3UXUA 2HOFA
chains in the Genus database with same CATH superfamily
1CRXA 4E0JA 3C28A 1P7DA 1PVPA 5C6KA 4DWPA 4E0ZA 4CRXA 1P4EC 4E0GA 4E10A 4E0PA 4F41A 4ACOA 1PVQA 4F43A 1M6XC 1AE9A 1A0PA 1PVRA 1KBUA 1Z19A 4DKSA 5DCFA 3CRXA 1Q3UA 1XO0A 1OUQA 1NZBA 1P4EA 3VCFA 5CRXA 1AIHA 1MA7A 1FLOA 2HOIA 1Q3VA 3NKHA 1Z1BA 1M6XA 5DORA 1XNSA 3MGVA 4E0YA 3SQIA 2A3VA 1DRGA 3T79A 3C29A 2CRXA 2V6EA 4A8EA 1F44A 3UXUA 2HOFA
chains in the Genus database with same CATH topology
1CRXA 3C28A 1P7DA 1PVPA 5C6KA 4CRXA 1P4EC 1PVQA 1M6XC 1AE9A 1A0PA 1PVRA 1KBUA 1Z19A 4DKSA 5DCFA 3CRXA 1Q3UA 1XO0A 1OUQA 1NZBA 1P4EA 3VCFA 5CRXA 1AIHA 1MA7A 1FLOA 2HOIA 1Q3VA 3NKHA 1Z1BA 1M6XA 5DORA 1XNSA 3MGVA 2A3VA 1DRGA 3C29A 2CRXA 4A8EA 1F44A 3UXUA 2HOFA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1CRX A;  3C28 A;  1P7D A;  1PVP A;  5C6K A;  4CRX A;  1P4E C;  1PVQ A;  1M6X C;  1AE9 A;  1A0P A;  1PVR A;  1KBU A;  1Z19 A;  4DKS A;  5DCF A;  3CRX A;  1Q3U A;  1XO0 A;  1OUQ A;  1NZB A;  1P4E A;  3VCF A;  5CRX A;  1AIH A;  1MA7 A;  1FLO A;  2HOI A;  1Q3V A;  3NKH A;  1Z1B A;  1M6X A;  5DOR A;  1XNS A;  3MGV A;  2A3V A;  1DRG A;  3C29 A;  2CRX A;  4A8E A;  1F44 A;  3UXU A;  2HOF A; 
#chains in the Genus database with same CATH topology
 1CRX A;  4E0J A;  3C28 A;  1P7D A;  1PVP A;  5C6K A;  4DWP A;  4E0Z A;  4CRX A;  1P4E C;  4E0G A;  4E10 A;  4E0P A;  4F41 A;  4ACO A;  1PVQ A;  4F43 A;  1M6X C;  1AE9 A;  1A0P A;  1PVR A;  1KBU A;  1Z19 A;  4DKS A;  5DCF A;  3CRX A;  1Q3U A;  1XO0 A;  1OUQ A;  1NZB A;  1P4E A;  3VCF A;  5CRX A;  1AIH A;  1MA7 A;  1FLO A;  2HOI A;  1Q3V A;  3NKH A;  1Z1B A;  1M6X A;  5DOR A;  1XNS A;  3MGV A;  4E0Y A;  3SQI A;  2A3V A;  1DRG A;  3T79 A;  3C29 A;  2CRX A;  2V6E A;  4A8E A;  1F44 A;  3UXU A;  2HOF A; 
#chains in the Genus database with same CATH homology
 1CRX A;  3C28 A;  1P7D A;  1PVP A;  5C6K A;  4CRX A;  1P4E C;  1PVQ A;  1M6X C;  1AE9 A;  1A0P A;  1PVR A;  1KBU A;  1Z19 A;  4DKS A;  5DCF A;  3CRX A;  1Q3U A;  1XO0 A;  1OUQ A;  1NZB A;  1P4E A;  3VCF A;  5CRX A;  1AIH A;  1MA7 A;  1FLO A;  2HOI A;  1Q3V A;  3NKH A;  1Z1B A;  1M6X A;  5DOR A;  1XNS A;  3MGV A;  2A3V A;  1DRG A;  3C29 A;  2CRX A;  4A8E A;  1F44 A;  3UXU A;  2HOF A; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...