3VDJA

Crystal structure of circumsporozoite protein atsr domain, r32 native form
Total Genus 12
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
12
sequence length
71
structure length
71
Chain Sequence
YVEFEPSDKHIKEYLNKIQNSLSTEWSPCSVTCGNGIQVRIKPGSANKPKDELDYANDIEKKICKMEKCPH
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Unexpected fold in the circumsporozoite protein target of malaria vaccines.
pubmed doi rcsb
molecule tags Cell invasion
source organism Plasmodium falciparum
molecule keywords Circumsporozoite (CS) protein
total genus 12
structure length 71
sequence length 71
ec nomenclature
pdb deposition date 2012-01-05

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00090 TSP_1 Thrombospondin type 1 domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
2.20.100.10 Mainly Beta Single Sheet TSP-1 type 1 repeat Thrombospondin type-1 (TSP1) repeat 3vdjA00
4A5WB 1SZLA 3T5OA 4HQOA 3VDKA 1LSLA 4HQLA 3R6BA 1VEXA 4HQNA 3VDJA 3VDLA
chains in the Genus database with same CATH superfamily
4A5WB 1SZLA 3T5OA 4HQOA 3VDKA 1LSLA 4HQLA 3R6BA 1VEXA 4HQNA 3VDJA 3VDLA
chains in the Genus database with same CATH topology
4A5WB 1SZLA 3T5OA 4HQOA 3VDKA 1LSLA 4HQLA 3R6BA 1VEXA 4HQNA 3VDJA 3VDLA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4A5W B;  1SZL A;  3T5O A;  4HQO A;  3VDK A;  1LSL A;  4HQL A;  3R6B A;  1VEX A;  4HQN A;  3VDJ A;  3VDL A; 
#chains in the Genus database with same CATH topology
 4A5W B;  1SZL A;  3T5O A;  4HQO A;  3VDK A;  1LSL A;  4HQL A;  3R6B A;  1VEX A;  4HQN A;  3VDJ A;  3VDL A; 
#chains in the Genus database with same CATH homology
 4A5W B;  1SZL A;  3T5O A;  4HQO A;  3VDK A;  1LSL A;  4HQL A;  3R6B A;  1VEX A;  4HQN A;  3VDJ A;  3VDL A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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